ExperimentSetReplicate

ExperimentSet4DNESJYLRY6V
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RNA-seq of untagged mouse embryonic stem cells treated with Auxin for 4 days

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXD31QZTP
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFIV3FK9LC
124.7m
101.28m
Experiment
4DNEXQDZJWJ1
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFI2EVPUIL
54.65m
44.72m
Experiment
4DNEXKLSLWNG
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFI7IF6DCT
35.27m
28.98m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXD31QZTP
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFIMWRNJZO
179.39m
2.62m
Experiment
4DNEXQDZJWJ1
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFICL1ETQM
79.29m
1.37m
Experiment
4DNEXKLSLWNG
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFIEW3PKCH
53.49m
706.79k