ExperimentSetReplicate

ExperimentSet4DNESJIRBSTA
released

RNA-seq on cerebellar granule neurons with Brd4 sgRNA isolated using syncTRAP at day 8 after in vivo electroporation from dCas9-KRAB mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

44 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXYT4P6BL
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIXJT6N7Z
15.06m
14.04m
Experiment
4DNEXICA1891
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFILXKCF45
14.97m
13.79m
Experiment
4DNEX6XLLQGC
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFITFSJQS3
13.68m
12.58m
Experiment
4DNEXSZN7TFJ
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIHQDPG9Y
16.03m
14.97m
Experiment
4DNEXDFYB9RM
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIQ2VGQW4
20.87m
19.57m
Experiment
4DNEXSC129OD
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIK582TED
19.18m
17.47m
Experiment
4DNEXP4SHEB8
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIOMDD5UC
27.11m
25.05m
Experiment
4DNEXHRK893M
Bio Rep 8, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIKVT7RKF
19.66m
18.09m
Experiment
4DNEX9O8YUKZ
Bio Rep 9, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIB4C9VMW
20.78m
19.34m
Experiment
4DNEX76LX8M5
Bio Rep 10, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFICW11M2G
14.62m
13.77m
Experiment
4DNEX9LGLPPR
Bio Rep 11, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIDUQBZGT
17.44m
16.51m
Show 4 More
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXYT4P6BL
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIZT1CHCT
15.16m
109.33k
Experiment
4DNEXICA1891
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIZWQFJ6T
17.01m
147.52k
Experiment
4DNEX6XLLQGC
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIJ8U9IXA
17.4m
149.79k
Experiment
4DNEXSZN7TFJ
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIFCPWJQL
16.52m
117.58k
Experiment
4DNEXDFYB9RM
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIYCZBZJV
18.33m
63k
Experiment
4DNEXSC129OD
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIVOAZX11
22.57m
435.95k
Experiment
4DNEXP4SHEB8
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIM4VPP7J
26.53m
591.15k
Experiment
4DNEXHRK893M
Bio Rep 8, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFISI6Z8UN
21.18m
453.52k
Experiment
4DNEX9O8YUKZ
Bio Rep 9, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI1LKJUC5
20.62m
304.35k
Experiment
4DNEX76LX8M5
Bio Rep 10, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIFZKJKRX
13.79m
69.25k
Experiment
4DNEX9LGLPPR
Bio Rep 11, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI9AROVMI
15.15m
75.25k
Show 4 More