ExperimentSetReplicate

ExperimentSet4DNESJGMKXGU
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ChIP-seq for Rad21 on CH12

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Rad21 mouse protein

9 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEX5KOI67N
Bio Rep 1, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIH195KCM
0.93
0.93
9.71m
Experiment
4DNEXBRJ68Y7
Bio Rep 2, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIHF15U9K
0.94
0.94
15.54m
Experiment
4DNEX57TGF8N
Bio Rep 3, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIX8I4MYV
0.94
0.94
14.79m
Experiment
4DNEXA231AAH
Bio Rep 4, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFI2TH4Y3D
0.87
0.87
9.84m
Experiment
4DNEX1GF3GCQ
Bio Rep 5, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIHPDP38V
0.86
0.86
13.25m
Experiment
4DNEXKLQ23YJ
Bio Rep 6, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIZM5X95F
0.9
0.91
27m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESJGMKXGU
Multiple Experiments
File
Peaks (bigbed)
4DNFIMJB2GNJ
24.7k
1.07
1.09
0.06