ExperimentSetReplicate

ExperimentSet4DNESGBB6GQJ
released
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RNA-seq of untagged mouse embryonic stem cells treated with Auxin for 2 days

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXOF218DH
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFIQICCH7T
89.79m
73.55m
Experiment
4DNEXZ5Q9XRE
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFII1BX9SG
34.08m
27.61m
Experiment
4DNEXDCASQJH
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFIOAY7IO5
55.04m
45.15m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXOF218DH
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFIOUZQF2N
133.6m
2.44m
Experiment
4DNEXZ5Q9XRE
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFI882TCT9
42.37m
409.56k
Experiment
4DNEXDCASQJH
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFIPC4KG2V
84.58m
903.86k