ExperimentSetReplicate

ExperimentSet4DNESFJWHCVO
released
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RNA-seq of untagged and untreated mouse embryonic stem cells

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXKD6JIU3
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFI6STOOQI
51.12m
41.97m
Experiment
4DNEXJAXSQR5
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFID81BXN4
97.73m
79.5m
Experiment
4DNEXAD79LKF
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Read Positions (bam)
4DNFIXO63JLI
93.05m
76.21m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXKD6JIU3
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFI6BBUIS5
76.92m
992.34k
Experiment
4DNEXJAXSQR5
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFIZKGDPIG
144.7m
3.22m
Experiment
4DNEXAD79LKF
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a
File
Gene Expression (tsv)
4DNFI9WV1PE1
144.58m
1.32m