ExperimentSetReplicate

ExperimentSet4DNESEISDW3D
released

RNA-seq on cerebellar granule neurons with Top1/2b sgRNA isolated using FANS at day 8 after in vivo electroporation from dCas9-KRAB mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

30 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXU84WFS9
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFICEZUJ2G
19.82m
19.39m
Experiment
4DNEXGPWPH8Y
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFITFFSMBE
20.47m
20.01m
Experiment
4DNEXNVVOK3O
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIVXGAVZB
19.51m
19.09m
Experiment
4DNEXK91SWQF
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFID5UN4MU
21.58m
21.1m
Experiment
4DNEXJZ8KI5M
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIKW2WFQP
23.29m
22.81m
Experiment
4DNEXMDKZ77R
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIBONSSJ1
20.49m
20.06m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXU84WFS9
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI1DTI41O
6.4m
23.52k
Experiment
4DNEXGPWPH8Y
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI46PL98O
6.7m
24.32k
Experiment
4DNEXNVVOK3O
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI7K9PDJX
6.16m
19.41k
Experiment
4DNEXK91SWQF
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFINB4UWQO
6.88m
23.4k
Experiment
4DNEXJZ8KI5M
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIM2N6848
7.59m
19.41k
Experiment
4DNEXMDKZ77R
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIKTRF9AS
6.95m
17.91k