ExperimentSetReplicate

ExperimentSet4DNESCT6MOUD
released

Total RNA-seq time course of EpiLC differentiation in F121-9 mESCs, 48hr time point

   January 22nd, 2021 at 12:35am

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
in vitro differentiated cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
File
Read Positions (bam)
4DNFIXY52O41
55m
42.97m
File
Read Positions (bam)
4DNFIU1SFIPT
58.19m
45.18m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
File
Gene Expression (tsv)
4DNFIYA3FWGJ
71.45m
27.42k
File
Gene Expression (tsv)
4DNFI53QI8C5
76.95m
50.3k