ExperimentSetReplicate

ExperimentSet4DNESBOY2QLJ
released

Replicates of RNA-seq experiments on H1-hESC (Tier 1) differentiated to definitive endoderm

   November 18th, 2021 at 6:27pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
in vitro differentiated cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
File
Read Positions (bam)
4DNFILMEJ3VP
50.46m
42.52m
File
Read Positions (bam)
4DNFIX3KDSEZ
69.73m
57.06m
File
Read Positions (bam)
4DNFI65X24YL
45.48m
36.3m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
File
Gene Expression (tsv)
4DNFIKDO2JBN
27.68m
174.52k
File
Gene Expression (tsv)
4DNFICX19FFC
34.9m
243.1k
File
Gene Expression (tsv)
4DNFIH9KOSIN
22.29m
207.34k