ExperimentSetReplicate

ExperimentSet4DNES8VTB8IQ
released
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RNA-seq on in vitro differentiated mouse neural progenitors cells GFP+ FACS sorted

   August 12th, 2019 at 2:59pm
Source Publication
Multiscale 3D Genome Rewiring during Mouse Neural Development.
Bonev B, Mendelson Cohen N, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
in vitro differentiated cells
Sample 
46C with Sox1-GFP
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXFNB4PYZ
Bio Rep 1, Tec Rep 1
RNA-seq on 46C with Sox1-GFP
File
Read Positions (bam)
4DNFIRD2EUF1
84.92m
62.89m
Experiment
4DNEX67VRMZR
Bio Rep 2, Tec Rep 1
RNA-seq on 46C with Sox1-GFP
File
Read Positions (bam)
4DNFIHSF4QTU
41.39m
36.49m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXFNB4PYZ
Bio Rep 1, Tec Rep 1
RNA-seq on 46C with Sox1-GFP
File
Gene Expression (tsv)
4DNFIDWEDH98
84.99m
68.16k
Experiment
4DNEX67VRMZR
Bio Rep 2, Tec Rep 1
RNA-seq on 46C with Sox1-GFP
File
Gene Expression (tsv)
4DNFIG2IXXRX
48.31m
610.42k