ExperimentSetReplicate

ExperimentSet4DNES494X4HC
released
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ChIP-seq input on C57BL/6NCrl embryonic day 12.5 mouse craniofacial prominence

   April 24th, 2022 at 12:12am
Source Publication
Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues.
Yu M, Zemke NR, et al., Nature structural & molecular biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
embryonic facial prominence
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXYTNTDEJ
Bio Rep 1, Tec Rep 1
ChIP-seq on embryonic facial prominence
File
4DNFIYXM4ZIG
read positions (bed)
445.47 MB
Experiment
4DNEX5SGR1YY
Bio Rep 2, Tec Rep 1
ChIP-seq on embryonic facial prominence
File
4DNFIMUB1WMQ
read positions (bed)
484.11 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXYTNTDEJ
Bio Rep 1, Tec Rep 1
ChIP-seq on embryonic facial prominence
File
Read Positions (bed)
4DNFIYXM4ZIG
0.88
0.88
26.51m
Experiment
4DNEX5SGR1YY
Bio Rep 2, Tec Rep 1
ChIP-seq on embryonic facial prominence
File
Read Positions (bed)
4DNFIMUB1WMQ
0.85
0.86
28.75m