ExperimentSetReplicate

ExperimentSet4DNES43S9IX5
released
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ChIP-seq for Rad21 on CH12 (CH12-CTCF-mZF9-11)

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: Rad21 mouse protein

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEX4XFIQ6G
Bio Rep 1, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFISB9PVC4
0.9
0.9
15.4m
Experiment
4DNEX3T6B17D
Bio Rep 2, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFI1XUY5K1
0.74
0.74
31.4m
Experiment
4DNEXCQVWAZH
Bio Rep 3, Tec Rep 1
ChIP-seq against Rad21 mouse protein on CH12
File
Read Positions (bed)
4DNFIGY7OMOG
0.86
0.86
6.63m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNES43S9IX5
Multiple Experiments
File
Peaks (bigbed)
4DNFIV1XR631
28.44k
1.02
1.14
0.08