ExperimentSetReplicate

ExperimentSet4DNES376JFR3
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Biological replicates of CTCF ChIP-seq on G1E-ER4 cells in prometaphase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Ctcf mouse protein

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXFPGI4JF
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIRJSUQ5C
0.76
0.76
13.16m
Experiment
4DNEXX7E41VX
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIPUAT8RN
0.73
0.72
17.69m
Experiment
4DNEXM2JYZJQ
Bio Rep 3, Tec Rep 1
ChIP-seq against Ctcf mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIBXSBH5V
0.41
0.34
9.18m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNES376JFR3
Multiple Experiments
File
Peaks (bigbed)
4DNFIS5XSRP4
16.11k
1.02
1.2
0.04