ExperimentSetReplicate

ExperimentSet4DNES19UNBJ7
released
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mRNA-seq on CH12

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

16 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXZ26OP2T
Bio Rep 1, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFISTF124S
19.91m
15.43m
Experiment
4DNEXDWSGYS9
Bio Rep 2, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFI5EPNX3A
34.6m
26.34m
Experiment
4DNEXF9SPK4E
Bio Rep 3, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFI3QSO9SK
22.68m
17.6m
Experiment
4DNEX53N8BAI
Bio Rep 4, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIRLI4GVA
35.07m
27.37m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXZ26OP2T
Bio Rep 1, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFI8SK45TO
15.39m
12.28k
Experiment
4DNEXDWSGYS9
Bio Rep 2, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFICVOGV37
27.27m
23.49k
Experiment
4DNEXF9SPK4E
Bio Rep 3, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIEZ3TN8I
17.57m
13.49k
Experiment
4DNEX53N8BAI
Bio Rep 4, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIQONDEC1
26.46m
27.02k