ExperimentSetReplicate

ExperimentSet4DNES16TZ5H2
released
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CTCF ChIP-seq on C57BL/6NCrl embryonic day 12.5 mouse midbrain

   April 24th, 2022 at 12:11am
Source Publication
Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues.
Yu M, Zemke NR, et al., Nature structural & molecular biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
midbrain
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXHLDLA4H
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on midbrain
File
Read Positions (bed)
4DNFIRKDMS3A
0.97
0.97
14.89m
Experiment
4DNEXPOAV747
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on midbrain
File
Read Positions (bed)
4DNFIS2RJSET
0.98
0.97
13.18m