4D Nucleome Data Portal
A platform to search, visualize, and download nucleomics data.

4DN Data Collections

Hi-C Datasets All Microscopy Datasets Chromatin Tracing Datasets View All Data Collections

Explore Our Tools and Resources for Data Visualization & Analysis

HiGlass

Use the 4DN visualization workspace to browse data

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JupyterHub

Explore data in the cloud using python & the 4DN jupyter hub

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MicroMeta

Enter and access microscope metadata with Micrometa

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Portal Resources

Experimental Resources

View Protocols, Cell Lines, Assays & File Formats

Data Analysis

Learn about our standardized bioinformatic analysis pipelines

View All Available Resources

TheMission

The 4D Nucleome (4DN) Network aims to understand the principles underlying nuclear organization. The 4D Nucleome Data Portal hosts data generated by 4DN and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization.

Data Use Guidelines

The data at the 4DN Data Portal is generated by the 4DN Network and made freely available to the scientific community.

If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication.
In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal Paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data.

Please direct any questions to the Data Coordination and Integration Center.