Publications

Included Properties

Data Type
Lab
Journal
Experiment Types
Status
1 Common Properties
 Project
4DN
10 Results
Title
Year
Journal
Exp Sets
Project
Pseudotime analysis for time-series single-cell sequencing and imaging data
Li GKim H-JPendyala SZhang RDisteche CMVert J-PDeng XFowler DMNoble WS
2024
bioRxiv
5
4DN
HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization.
Wei XXiang YPeters DTMarius CSun TShan ROu JLin XYue FLi WSoutherland KWDiao Y
2022
Molecular cell
-
4DN
An integrated platform for high-throughput nanoscopy.
Barentine AESLin YCourvan EMKidd PLiu MBalduf LPhan TRivera-Molina FGrace MRMarin ZLessard MRios Chen JWang SNeugebauer KMBewersdorf JBaddeley D
2023
Nature biotechnology
5
4DN
Comprehensive single-cell transcriptional profiling of a multicellular organism.
Cao JPacker JSRamani VCusanovich DAHuynh CDaza RQiu XLee CFurlan SNSteemers FJAdey AWaterston RHTrapnell CShendure J
2017
Science(New York, N.Y.)
-
4DN
Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
Cusanovich DADaza RAdey APliner HAChristiansen LGunderson KLSteemers FJTrapnell CShendure J
2015
Science(New York, N.Y.)
-
4DN
A fluorogenic array for temporally unlimited single-molecule tracking.
Ghosh RPFranklin JMDraper WEShi QBeltran BSpakowitz AJLiphardt JT
2019
Nature chemical biology
-
4DN
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
Juric IYu MAbnousi ARaviram RFang RZhao YZhang YQiu YYang YLi YRen BHu M
2019
PLoS computational biology
2
4DN
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.
Chen YZhang YWang YZhang LBrinkman EKAdam SAGoldman Rvan Steensel BMa JBelmont AS
2018
The Journal of cell biology
28
4DN
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Quinodoz SAOllikainen NTabak BPalla ASchmidt JMDetmar ELai MMShishkin AABhat PTakei YTrinh VAznauryan ERussell PCheng CJovanovic MChow ACai LMcDonel PGarber MGuttman M
2018
Cell
22
4DN
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