Publications

Included Properties

Data Type
  • Publication5
    • Project
    Lab
    Journal
    Experiment Types
    Categories
  • integrative analysis5
    • Status
    5 Results
    Title
    Year
    Journal
    Exp Sets
    Project
    Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.
    Deshpande ASUlahannan NPendleton MDai XLy LBehr JMSchwenk SLiao WAugello MATyer CRughani PKudman STian HOtis HGAdney EWilkes DMosquera JMBarbieri CEMelnick AStoddart DTurner DJJuul SHarrington EImielinski M
    2022
    Nature biotechnology
    -
    External
    Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation.
    Dsouza KBMaslova AAl-Jibury EMerkenschlager MBhargava VKLibbrecht MW
    2022
    Nature communications
    -
    External
    Pseudotime analysis for time-series single-cell sequencing and imaging data
    Li GKim H-JPendyala SZhang RDisteche CMVert J-PDeng XFowler DMNoble WS
    2024
    bioRxiv
    5
    4DN
    Cohesin-mediated loop anchors confine the locations of human replication origins.
    Emerson DJZhao PACook ALBarnett RJKlein KNSaulebekova DGe CZhou LSimandi ZMinsk MKTitus KRWang WGong WZhang DYang LVenev SVGibcus JHYang HSasaki TKanemaki MTYue FDekker JChen CLGilbert DMPhillips-Cremins JE
    2022
    Nature
    66
    4DN
    An integrated encyclopedia of DNA elements in the human genome.
    ENCODE Project Consortium
    2012
    Nature
    -
    ENCODE
    - fin -