Included Properties
Data Type
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Status
Warnings
8 Common Properties
Project
4DN
Experiment Category
Sequencing
Modifications
No value
Treatments
No value
Assay Details
Enzyme: DpnII
Center
NOFIC - Shendure
Set Type
Replicate
Commendations
No value
28 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop
sciHi-C on ES_Tsix-stop cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F123-CASTx129 differentiated to embryoid body
sciHi-C on F123 cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
F123-CASTx129 differentiated to embryoid body
sciHi-C on F123 cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
F123-CASTx129
sciHi-C on F123 cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 20
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129
sciHi-C on F121-6 cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to neuronal stem cell
sciHi-C on ES_Tsix-stop cells
NPCs clonally derived from day 11 EB cell
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 11
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop differentiated to embryoid body
sciHi-C on ES_Tsix-stop cells
Embryoid body day 3
Enzyme
DpnII
sci-Hi-C
ES_Tsix-stop
sciHi-C on ES_Tsix-stop cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F123-CASTx129 differentiated to neuronal stem cell
sciHi-C on F123 cells
NPCs clonally derived from day 11 EB cell
Enzyme
DpnII
sci-Hi-C
F123-CASTx129
sciHi-C on F123 cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to neuronal stem cell
sciHi-C on F121-6 cells
NPCs clonally derived from day 11 EB cell
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 11
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 7
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129 differentiated to embryoid body
sciHi-C on F121-6 cells
Embryoid body day 3
Enzyme
DpnII
sci-Hi-C
F121-6-CASTx129
sciHi-C on F121-6 cells
Undifferentiated mESCs
Enzyme
DpnII
sci-Hi-C
WTC-11 with MYL2-EGFP
sciHi-C on WTC-11 mEGFP cells
3.5% PF fixation
Enzyme
DpnII
sci-Hi-C
WTC-11 with MYL2-EGFP
sciHi-C on WTC-11 mEGFP cells
3% PF fixation
Enzyme
DpnII
sci-Hi-C
GM12878 (Tier 1)
sci-Hi-C on five human cell lines - analyzed using topic modeling
GM12878
Enzyme
DpnII
sci-Hi-C
HAP-1 (Tier 2)
sci-Hi-C on five human cell lines - analyzed using topic modeling
HAP-1
Enzyme
DpnII