Publications

 

Properties

Data Type
  • Publication52
    • Project
  • 4DN52
    • Lab
    Journal
    Experiment Types
    Status
    1 Common Properties
     Validation Errors
    No value
    52 Results
    Title
    Year
    Journal
    Exp Sets
    Project
    Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.
    Shin YBerry JPannucci NHaataja MPToettcher JEBrangwynne CP
    2017
    Cell
    -
    4DN
    Comprehensive single-cell transcriptional profiling of a multicellular organism.
    Cao JPacker JSRamani VCusanovich DAHuynh CDaza RQiu XLee CFurlan SNSteemers FJAdey AWaterston RHTrapnell CShendure J
    2017
    Science(New York, N.Y.)
    -
    4DN
    Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
    Cusanovich DADaza RAdey APliner HAChristiansen LGunderson KLSteemers FJTrapnell CShendure J
    2015
    Science(New York, N.Y.)
    -
    4DN
    Ultrastructural Details of Mammalian Chromosome Architecture.
    Krietenstein NAbraham SVenev SVAbdennur NGibcus JHsieh TSParsi KMYang LMaehr RMirny LADekker JRando OJ
    2020
    Molecular cell
    4
    4DN
    Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
    Hsieh TSCattoglio CSlobodyanyuk EHansen ASRando OJTjian RDarzacq X
    2020
    Molecular cell
    3
    4DN
    Distinct features of nucleolus-associated domains in mouse embryonic stem cells.
    Bizhanova AYan AYu JZhu LJKaufman PD
    2020
    Chromosoma
    12
    4DN
    Chromatin structure dynamics during the mitosis-to-G1 phase transition.
    Zhang HEmerson DJGilgenast TGTitus KRLan YHuang PZhang DWang HKeller CAGiardine BHardison RCPhillips-Cremins JEBlobel GA
    2019
    Nature
    36
    4DN
    Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells.
    Ramani VDeng XQiu RLee CDisteche CMNoble WSShendure JDuan Z
    2020
    Methods(San Diego, Calif.)
    -
    4DN
    Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.
    Zhang YLi TPreissl SAmaral MLGrinstein JDFarah ENDestici EQiu YHu RLee AYChee SMa KYe ZZhu QHuang HFang RYu LIzpisua Belmonte JCWu JEvans SMChi NCRen B
    2019
    Nature genetics
    6
    4DN
    Cell cycle dynamics of lamina associated DNA
    Tom van SchaikMabel VosDaan Peric-HupkesBas van Steensel
    2019
    bioRxiv
    50
    4DN
    Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF.
    Hansen ASHsieh TSCattoglio CPustova ISaldana-Meyer RReinberg DDarzacq XTjian R
    2019
    Molecular cell
    2
    4DN
    Common DNA sequence variation influences 3-dimensional conformation of the human genome.
    Gorkin DUQiu YHu MFletez-Brant KLiu TSchmitt ADNoor AChiou JGaulton KJSebat JLi YHansen KDRen B
    2019
    Genome biology
    19
    4DN
    Multiplex chromatin interactions with single-molecule precision.
    Zheng MTian SZCapurso DKim MMaurya RLee BPiecuch EGong LZhu JJLi ZWong CHNgan CYWang PRuan XWei CLRuan Y
    2019
    Nature
    -
    4DN
    Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
    Li XLuo OJWang PZheng MWang DPiecuch EZhu JJTian SZTang ZLi GRuan Y
    2017
    Nature protocols
    -
    4DN
    A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
    Abramo KValton ALVenev SVOzadam HFox ANDekker J
    2019
    Nature cell biology
    194
    4DN
    Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting.
    Zoller BLittle SCGregor T
    2018
    Cell
    6
    4DN
    TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes
    Liguo ZhangYang ZhangYu ChenOmid GholamalamdariYuchuan WangJian MaAndrew S. Belmont
    2020
    bioRxiv
    39
    4DN
    Compartment-dependent chromatin interaction dynamics revealed by liquid chromatin Hi-C
    Houda BelaghzalTyler BorrmanAndrew D. StephensDenis L. LafontaineSergey V. VenevZhiping WengJohn F. MarkoJob Dekker
    2019
    bioRxiv
    19
    4DN
    Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
    Sima JChakraborty ADileep VMichalski MKlein KNHolcomb NPTurner JLPaulsen MTRivera-Mulia JCTrevilla-Garcia CBartlett DAZhao PAWashburn BKNora EPKraft KMundlos SBruneau BGLjungman MFraser PAy FGilbert DM
    2019
    Cell
    9
    4DN
    Joint profiling of DNA methylation and chromatin architecture in single cells.
    Li GLiu YZhang YKubo NYu MFang RKellis MRen B
    2019
    Nature methods
    -
    4DN
    Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.
    Ray JMunn PRVihervaara ALewis JJOzer ADanko CGLis JT
    2019
    Proceedings of the National Academy of Sciences of the Unite...
    4
    4DN
    Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
    Bertero AFields PASmith ASTLeonard ABeussman KSniadecki NJKim DHTse HFPabon LShendure JNoble WSMurry CE
    2019
    The Journal of cell biology
    6
    4DN
    3D Multicolor Nanoscopy at 10,000 Cells a Day
    Andrew E S BarentineYu LinMiao LiuPhylicia KiddLeonhard BaldufMichael R GraceSiyuan WangJoerg BewersdorfDavid Baddeley
    2019
    bioRxiv
    5
    4DN
    Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.
    Leemans Cvan der Zwalm MCHBrueckner LComoglio Fvan Schaik TPagie Lvan Arensbergen Jvan Steensel B
    2019
    Cell
    7
    4DN
    Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
    Bertero AFields PARamani VBonora GYardimci GGReinecke HPabon LNoble WSShendure JMurry CE
    2019
    Nature communications
    18
    4DN