{"lab": {"title": "Benoit Bruneau, UCSF", "status": "current", "uuid": "4dfac8f5-a868-4b29-9c11-a0932130e121", "correspondence": [{"contact_email": "YmVub2l0LmJydW5lYXVAZ2xhZHN0b25lLnVjc2YuZWR1", "@id": "/users/c015dffd-4ca1-4070-905f-8a04b3754b2b/", "display_title": "Benoit Bruneau"}], "@type": ["Lab", "Item"], "display_title": "Benoit Bruneau, UCSF", "@id": "/labs/benoit-bruneau-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.4dfac8f5-a868-4b29-9c11-a0932130e121"]}}, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJDB9SVUqc_report.html", "desc": "", "name": "", "award": {"display_title": "EXTERNAL AWARD", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "status": "current", "center": "External", "@id": "/awards/external-award/", "project": "External", "@type": ["Award", "Item"], "description": "Funding source is from outside 4DN.", "name": "external-award", "center_title": "External", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "dup_qc": [{"dupes_pct": 0.209821, "paired_dupes": 0, "paired_reads": 0, "unmapped_reads": 0, "unpaired_dupes": 9251710, "unpaired_reads": 44093306, "paired_opt_dupes": 0}], "pbc_qc": [{"NRF": 0.79093, "PBC1": 0.791353, "PBC2": 4.769659, "one_read_pair": 27597259, "two_read_pair": 5786003, "total_read_pairs": 44091784, "distinct_read_pairs": 34873521}], "status": "released", "xcor_score": [{"NSC": 1.059349, "RSC": 0.7875458, "min_corr": 0.1860964, "num_reads": 15000000, "argmin_corr": 1500, "est_frag_len": 220, "phantom_peak": 75, "corr_est_frag_len": 0.19714109246085, "corr_phantom_peak": 0.2001206}], "flagstat_qc": [{"read1": 0, "read2": 0, "total": 55496250, "mapped": 52334044, "paired": 0, "duplicates": 0, "mapped_pct": 94.3, "singletons": 0, "diff_chroms": 0, "with_itself": 0, "singletons_pct": 0.0, "paired_properly": 0, "read1_qc_failed": 0, "read2_qc_failed": 0, "total_qc_failed": 0, "mapped_qc_failed": 0, "paired_qc_failed": 0, "paired_properly_pct": 0.0, "duplicates_qc_failed": 0, "singletons_qc_failed": 0, "diff_chroms_qc_failed": 0, "with_itself_qc_failed": 0, "paired_properly_qc_failed": 0}], "date_created": "2019-01-30T19:46:48.480377+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-06-20T20:03:51.459563+00:00"}, "public_release": "2019-06-20", "schema_version": "1", "project_release": "2019-06-20", "contributing_labs": [{"display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "status": "current", "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}], "nodup_flagstat_qc": [{"read1": 0, "read2": 0, "total": 34841596, "mapped": 34841596, "paired": 0, "duplicates": 0, "mapped_pct": 100.0, "singletons": 0, "diff_chroms": 0, "with_itself": 0, "singletons_pct": 0.0, "paired_properly": 0, "read1_qc_failed": 0, "read2_qc_failed": 0, "total_qc_failed": 0, "mapped_qc_failed": 0, "paired_qc_failed": 0, "paired_properly_pct": 0.0, "duplicates_qc_failed": 0, "singletons_qc_failed": 0, "diff_chroms_qc_failed": 0, "with_itself_qc_failed": 0, "paired_properly_qc_failed": 0}], "overall_quality_status": "PASS", "@id": "/quality-metrics-chipseq/d7791c1a-a19f-4a15-a930-bc1507133dc3/", "@type": ["QualityMetricChipseq", "QualityMetric", "Item"], "uuid": "d7791c1a-a19f-4a15-a930-bc1507133dc3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "QualityMetricChipseq from 2019-01-30", "external_references": [], "quality_metric_summary": [{"title": "Nonredundant Read Fraction (NRF)", "value": "0.79", "tooltip": "distinct non-mito read pairs / total non-mito read pairs", "numberType": "float"}, {"title": "PCR Bottleneck Coefficient (PBC)", "value": "0.79", "tooltip": "one-read non-mito read pairs / distinct non-mito read pairs", "numberType": "float"}, {"title": "Filtered & Deduped Reads", "value": "34841596", "numberType": "integer"}], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}