{"lab": {"@id": "/labs/rafael-casellas-lab/", "uuid": "ce54a7f7-af8a-4505-8327-e430634f494b", "@type": ["Lab", "Item"], "display_title": "Rafael Casellas, NIH", "title": "Rafael Casellas, NIH", "status": "current", "correspondence": [{"contact_email": "Y2FzZWxsYXJAbWFpbC5uaWguZ292", "@id": "/users/68b09572-0c3e-48c7-90a9-7bad21d6bac1/", "display_title": "Rafael Casellas"}], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.ce54a7f7-af8a-4505-8327-e430634f494b"]}}, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9295QE8qc_report.html", "desc": "", "name": "", "award": {"name": "external-award", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "center": "External", "project": "External", "status": "current", "description": "Funding source is from outside 4DN.", "@type": ["Award", "Item"], "display_title": "EXTERNAL AWARD", "center_title": "External", "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "dup_qc": [{"dupes_pct": 0.228231, "paired_dupes": 0, "paired_reads": 0, "unmapped_reads": 0, "unpaired_dupes": 9441744, "unpaired_reads": 41369316, "paired_opt_dupes": 0}], "pbc_qc": [{"NRF": 0.773018, "PBC1": 0.79485, "PBC2": 5.252368, "one_read_pair": 25409530, "two_read_pair": 4837728, "total_read_pairs": 41354405, "distinct_read_pairs": 31967686}], "status": "released", "xcor_score": [{"NSC": 2.275776, "RSC": 1.393735, "min_corr": 0.1483782, "num_reads": 15000000, "argmin_corr": 1500, "est_frag_len": 130, "phantom_peak": 55, "corr_est_frag_len": 0.337675571356567, "corr_phantom_peak": 0.2841984}], "flagstat_qc": [{"read1": 0, "read2": 0, "total": 52871252, "mapped": 51078148, "paired": 0, "duplicates": 0, "mapped_pct": 96.61, "singletons": 0, "diff_chroms": 0, "with_itself": 0, "singletons_pct": 0.0, "paired_properly": 0, "read1_qc_failed": 0, "read2_qc_failed": 0, "total_qc_failed": 0, "mapped_qc_failed": 0, "paired_qc_failed": 0, "paired_properly_pct": 0.0, "duplicates_qc_failed": 0, "singletons_qc_failed": 0, "diff_chroms_qc_failed": 0, "with_itself_qc_failed": 0, "paired_properly_qc_failed": 0}], "date_created": "2019-06-18T16:36:48.260145+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-12-02T00:10:42.694559+00:00"}, "public_release": "2019-12-02", "schema_version": "1", "project_release": "2019-12-02", "contributing_labs": [{"uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "@type": ["Lab", "Item"], "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "display_title": "4DN DCIC, HMS", "status": "current", "@id": "/labs/4dn-dcic-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}], "nodup_flagstat_qc": [{"read1": 0, "read2": 0, "total": 31927572, "mapped": 31927572, "paired": 0, "duplicates": 0, "mapped_pct": 100.0, "singletons": 0, "diff_chroms": 0, "with_itself": 0, "singletons_pct": 0.0, "paired_properly": 0, "read1_qc_failed": 0, "read2_qc_failed": 0, "total_qc_failed": 0, "mapped_qc_failed": 0, "paired_qc_failed": 0, "paired_properly_pct": 0.0, "duplicates_qc_failed": 0, "singletons_qc_failed": 0, "diff_chroms_qc_failed": 0, "with_itself_qc_failed": 0, "paired_properly_qc_failed": 0}], "overall_quality_status": "PASS", "@id": "/quality-metrics-chipseq/0c1feddf-dd16-4d89-87ca-674c3f3d0e94/", "@type": ["QualityMetricChipseq", "QualityMetric", "Item"], "uuid": "0c1feddf-dd16-4d89-87ca-674c3f3d0e94", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "QualityMetricChipseq from 2019-06-18", "external_references": [], "quality_metric_summary": [{"title": "Nonredundant Read Fraction (NRF)", "value": "0.77", "tooltip": "distinct non-mito read pairs / total non-mito read pairs", "numberType": "float"}, {"title": "PCR Bottleneck Coefficient (PBC)", "value": "0.79", "tooltip": "one-read non-mito read pairs / distinct non-mito read pairs", "numberType": "float"}, {"title": "Filtered & Deduped Reads", "value": "31927572", "numberType": "integer"}], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}