{"name": "resources/data-collections/high-resolution-hic-datasets", "title": "High-Resolution Hi-C Datasets", "status": "released", "aliases": ["4dn-dcic-lab:high_resolution_hic_datasets_page"], "content": [{"lab": {"status": "current", "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "body": "Below is a list of high-resolution Hi-C experiment sets on the 4DN Data Portal with more than 1 billion reads.\n\n<EmbeddedItemSearchTable\n    searchHref=\"/browse/?type=ExperimentSetReplicate&processed_files.quality_metric.Total+reads.from=1000000000&experiments_in_set.experiment_type.assay_subclass_short=Hi-C&sort=-processed_files.quality_metric.Total+reads\"\n    schemas={schemas}\n    session={session}\n    title={<SearchTableTitle title=\"Replicate Experiment\" externalSearchLinkVisible={true} />}\n    key=\"anyRandomTextString\"\n    hideFacets={[\n        \"type\",\n        \"status\",\n        \"aggregated_items.badges.item.badge.commendation\",\n        \"aggregated_items.badges.item.badge.warning\",\n        \"validation_errors.name\",\n        \"experimentset_type\",\n        \"experiments_in_set.experiment_type.experiment_category\",\n    ]}\n    columns={{\n        \"display_title\": {\n            \"title\" : \"Title\"\n        },\n        \"processed_files.quality_metric.Total reads\": {\n            \"title\" : \"Filtered Reads\"\n        },\n        \"experiments_in_set.experiment_type.display_title\": {\n            \"title\": \"Experiment Type\"\n        },\n        \"experiments_in_set.biosample.biosource_summary\": {\n            \"title\": \"Biosample\"\n        },\n        \"dataset_label\": {\n            \"title\": \"Dataset\"\n        },\n        \"condition\": {\n            \"title\": \"Condition\"\n        },\n        \"lab.display_title\": {\n            \"title\": \"Lab\"\n        }\n    }}\n/>", "name": "resources.data-collections.high-resolution-hic-datasets", "award": {"status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@type": ["Award", "Item"], "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "@id": "/awards/1U01CA200059-01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "High-Resolution Hi-C Datasets", "status": "released", "aliases": ["4dn-dcic-lab:deep_datasets"], "options": {"filetype": "jsx", "collapsible": false, "default_open": true, "convert_ext_links": true}, "date_created": "2020-10-14T00:10:27.298341+00:00", "section_type": "Page Section", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2025-08-14T08:53:22.957304+00:00"}, "schema_version": "2", "@id": "/static-sections/5c02ae63-564e-4839-b8b4-ad8bb6939863/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "5c02ae63-564e-4839-b8b4-ad8bb6939863", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.e4a22298-1da4-4e59-8a65-9e661f47fb48"]}, "display_title": "High-Resolution Hi-C Datasets", "external_references": [], "content": "Below is a list of high-resolution Hi-C experiment sets on the 4DN Data Portal with more than 1 billion reads.\n\n<EmbeddedItemSearchTable\n    searchHref=\"/browse/?type=ExperimentSetReplicate&processed_files.quality_metric.Total+reads.from=1000000000&experiments_in_set.experiment_type.assay_subclass_short=Hi-C&sort=-processed_files.quality_metric.Total+reads\"\n    schemas={schemas}\n    session={session}\n    title={<SearchTableTitle title=\"Replicate Experiment\" externalSearchLinkVisible={true} />}\n    key=\"anyRandomTextString\"\n    hideFacets={[\n        \"type\",\n        \"status\",\n        \"aggregated_items.badges.item.badge.commendation\",\n        \"aggregated_items.badges.item.badge.warning\",\n        \"validation_errors.name\",\n        \"experimentset_type\",\n        \"experiments_in_set.experiment_type.experiment_category\",\n    ]}\n    columns={{\n        \"display_title\": {\n            \"title\" : \"Title\"\n        },\n        \"processed_files.quality_metric.Total reads\": {\n            \"title\" : \"Filtered Reads\"\n        },\n        \"experiments_in_set.experiment_type.display_title\": {\n            \"title\": \"Experiment Type\"\n        },\n        \"experiments_in_set.biosample.biosource_summary\": {\n            \"title\": \"Biosample\"\n        },\n        \"dataset_label\": {\n            \"title\": \"Dataset\"\n        },\n        \"condition\": {\n            \"title\": \"Condition\"\n        },\n        \"lab.display_title\": {\n            \"title\": \"Lab\"\n        }\n    }}\n/>", "filetype": "jsx", "content_as_html": "<div class=\"html-container\">Below is a list of high-resolution Hi-C experiment sets on the 4DN Data Portal with more than 1 billion reads.\n\n<EmbeddedItemSearchTable\n    searchHref=\"/browse/?type=ExperimentSetReplicate&processed_files.quality_metric.Total+reads.from=1000000000&experiments_in_set.experiment_type.assay_subclass_short=Hi-C&sort=-processed_files.quality_metric.Total+reads\"\n    schemas={schemas}\n    session={session}\n    title={<SearchTableTitle title=\"Replicate Experiment\" externalSearchLinkVisible={true} />}\n    key=\"anyRandomTextString\"\n    hideFacets={[\n        \"type\",\n        \"status\",\n        \"aggregated_items.badges.item.badge.commendation\",\n        \"aggregated_items.badges.item.badge.warning\",\n        \"validation_errors.name\",\n        \"experimentset_type\",\n        \"experiments_in_set.experiment_type.experiment_category\",\n    ]}\n    columns={{\n        \"display_title\": {\n            \"title\" : \"Title\"\n        },\n        \"processed_files.quality_metric.Total reads\": {\n            \"title\" : \"Filtered Reads\"\n        },\n        \"experiments_in_set.experiment_type.display_title\": {\n            \"title\": \"Experiment Type\"\n        },\n        \"experiments_in_set.biosample.biosource_summary\": {\n            \"title\": \"Biosample\"\n        },\n        \"dataset_label\": {\n            \"title\": \"Dataset\"\n        },\n        \"condition\": {\n            \"title\": \"Condition\"\n        },\n        \"lab.display_title\": {\n            \"title\": \"Lab\"\n        }\n    }}\n/></div>"}], "date_created": "2020-10-27T23:35:33.490284+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-06-21T22:23:11.005156+00:00"}, "schema_version": "3", "table-of-contents": {"enabled": false, "skip-depth": 1, "header-depth": 4, "include-top-link": false}, "@id": "/pages/1a70d39c-308b-408f-a18f-9ffd5fc77c52/", "@type": ["Page", "Item"], "uuid": "1a70d39c-308b-408f-a18f-9ffd5fc77c52", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.e4a22298-1da4-4e59-8a65-9e661f47fb48"]}, "display_title": "High-Resolution Hi-C Datasets", "external_references": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}