FileProcessed

File4DNFINMHXGVQ
released

This is an output file of the Hi-C processing pipeline

   January 30th, 2020 at 8:34pm

Note(s)  


  1. This file was produced from running the standardized Hi-C pipeline on ChIA-PET fastq files. The processing may not be optimal as the Hi-C pipeline does not take the linkers used in ChIA-PET into account.
  2. WARNING - Due to a bug in the version of cooler (0.8.3) used in the current 4DN standard Hi-C processing pipeline some pixels may occur mulitple times at a single resolution with different counts being reported for each occurence. This duplication does not affect the higlass display of these files, howevver, downstream analyses using this file may encounter issues due to this pixel duplication. The counts from the duplicate pixels can be aggregated to determine the correct count value at that location. If this issue is problematic for your needs you should consider regenerating the matrices from the merged pairs file of the associated dataset using a more recent version of cooler. We are working to update the pipeline but do not yet have a predicted date for when this issue will be resolved.

Properties  


File Format 
File Type 
Contact Matrix
General Classification 
Processed File
(Supplementary)
File Size 
1.4 GB

More Information


Quality Metric Summary 
Failed Balancing
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000

Experiment Set

Initializing...