File4DNFIK3276U7
released
January 30th, 2020 at 8:41pm
Note(s)
- This contact matrix was generated by running the matrix aggregation and normalization step of the 4DN standard Hi-C pipeline on a merged pairs file. The merged pairs file was produced by the pairs filtering step of the same pipeline using as input the individual pairs files produced by the experimental lab from the ChIA-PIPE analysis pipeline.
- WARNING - Due to a bug in the version of cooler (0.8.3) used in the current 4DN standard Hi-C processing pipeline some pixels may occur mulitple times at a single resolution with different counts being reported for each occurence. This duplication does not affect the higlass display of these files, howevver, downstream analyses using this file may encounter issues due to this pixel duplication. The counts from the duplicate pixels can be aggregated to determine the correct count value at that location. If this issue is problematic for your needs you should consider regenerating the matrices from the merged pairs file of the associated dataset using a more recent version of cooler. We are working to update the pipeline but do not yet have a predicted date for when this issue will be resolved.
Properties
File Format
File Type
Contact Matrix
General Classification
Processed File
(Supplementary)
(Supplementary)
File Size
1.68 GB
More Information
Quality Metric Summary
Failed Balancing
None