{"lab": {"@type": ["Lab", "Item"], "status": "current", "title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "@id": "/labs/4dn-dcic-lab/", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "display_title": "4DN DCIC, HMS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}, "pi": {"error": "no view permissions"}}, "award": {"status": "current", "@type": ["Award", "Item"], "description": "DCIC: The goals of the 4D Nucleome (4DN) Data Coordination and Integration Center (DCIC) are to collect, store, curate, display, and analyze data generated in the 4DN Network. We have assembled a team of investigators with a strong track record in analysis of chromatin interaction data, image processing and three-dimensional data visualization, integrative analysis of genomic and epigenomic data, data portal development, large-scale computing, and development of secure and flexible cloud technologies. In Aim 1, we will develop efficient submission pipelines for data and metadata from 4DN data production groups. We will define data/metadata requirements and quality metrics in conjunction with the production groups and ensure that high-quality, well- annotated data become available to the wider scientific community in a timely manner. In Aim 2, we will develop a user-friendly data portal for the broad scientific community. This portal will provide an easy-to-navigate interface for accessing raw and intermediate data files, allow for programmatic access via APIs, and will incorporate novel analysis and visualization tools developed by DCIC as well as other Network members. For computing and storage scalability and cost-effectiveness, significant efforts will be devoted to development and deployment of cloud-based technology. We will conduct tutorials and workshops to facilitate the use of 4DN data and tools by external investigators. In Aim 3, we will coordinate and assist in conducting integrative analysis of the multiple data types. These efforts will examine key questions in higher-order chromatin organization using both sequence and image data, and the tools and algorithms developed here will be incorporated into the data portal for use by other investigators. These three aims will ensure that the data generated in 4DN will have maximal impact for the scientific community.", "@id": "/awards/1U01CA200059-01/", "center_title": "DCIC - DCIC", "project": "4DN", "name": "1U01CA200059-01", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "pi": {"error": "no view permissions"}}, "md5sum": "a08d0ff4843e863ae88b420f03a71635", "status": "released", "accession": "4DNFIIOIIDO5", "file_size": 22413190771, "file_type": "alignments", "description": "This is an output file of the Hi-C processing pipeline", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2018-10-17T14:22:50.144557+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-03-28T16:12:43.940793+00:00"}, "public_release": "2018-11-05", "quality_metric": {"@type": ["QualityMetricBamqc", "QualityMetric", "Item"], "uuid": "c7bc422d-3726-4885-b5ad-8c61ac1aca59", "@id": "/quality-metrics-bamqc/c7bc422d-3726-4885-b5ad-8c61ac1aca59/", "display_title": "QualityMetricBamqc from 2019-12-20", "status": "released", "quality_metric_summary": [{"title": "Total Reads", "value": "169285587", "numberType": "integer"}, {"title": "Unmapped Reads", "value": "15.942", "tooltip": "Percent of total reads (=26.99m)", "numberType": "percent"}, {"title": "Multimapped Reads", "value": "13.655", "tooltip": "Percent of total reads (=23.12m)", "numberType": "percent"}, {"title": "Duplicate Reads", "value": "3.01", "tooltip": "Percent of total reads (=5.1m)", "numberType": "percent"}, {"title": "Walks", "value": "0.001", "tooltip": "Percent of total reads (=0.0m)", "numberType": "percent"}, {"title": "Minor Contigs", "value": "0.126", "tooltip": "Percent of total reads (=0.21m)", "numberType": "percent"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "3", "genome_assembly": "GRCh38", "project_release": "2018-11-05", "contributing_labs": [{"status": "current", "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "display_title": "Job Dekker, UMMS", "@id": "/labs/job-dekker-lab/", "uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "@type": ["Lab", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}], "source_experiments": ["f714810e-a32c-4aed-b69a-6f4dd94af5c9"], "file_classification": "processed file", "percent_clipped_sites_with_re_motif": 53.25, "@id": "/files-processed/4DNFIIOIIDO5/", "@type": ["FileProcessed", "File", "Item"], "uuid": "8f762e16-c60b-462d-833b-80be1e846aa4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIIOIIDO5.bam", "external_references": [], "experiments": [{"display_title": "Dilution Hi-C on brain pericyte with HindIII - 4DNEXV6FOCE7", "status": "released", "accession": "4DNEXV6FOCE7", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "f714810e-a32c-4aed-b69a-6f4dd94af5c9", "@id": "/experiments-hi-c/4DNEXV6FOCE7/", "digestion_enzyme": {"@id": "/enzymes/HindIII/", "status": "released", "name": "HindIII", "@type": ["Enzyme", "Item"], "uuid": "2ace2f00-c913-4bac-a6ef-0b316bc2108e", "display_title": "HindIII", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "biosample": {"@id": "/biosamples/4DNBS9XHX5AS/", "@type": ["Biosample", "Item"], "treatments_summary": "None", "status": "released", "uuid": "1bc56728-48d0-4ff5-8f7b-2025d6e226e7", "modifications_summary": "None", "display_title": "4DNBS9XHX5AS", "accession": "4DNBS9XHX5AS", "biosource_summary": "brain pericyte", "biosource": [{"@id": "/biosources/4DNSR4HIC29L/", "@type": ["Biosource", "Item"], "biosource_type": "primary cell", "status": "released", "cell_line_tier": "Unclassified", "uuid": "3d5b5764-8328-4a02-851a-0b9b038134d1", "display_title": "brain pericyte - 4DNSR4HIC29L", "organism": {"@id": "/organisms/9606/", "name": "human", "status": "released", "@type": ["Organism", "Item"], "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "display_title": "H. sapiens", "scientific_name": "Homo sapiens", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"uuid": "da0db5bb-1586-47ed-a044-a88414683175", "@type": ["IndividualHuman", "Individual", "Item"], "display_title": "4DNINSNCCV3E", "status": "released", "@id": "/individuals-human/4DNINSNCCV3E/", "protected_data": false, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"status": "released", "display_title": "brain", "@type": ["OntologyTerm", "Item"], "uuid": "111170bc-8535-4448-903e-854af460a233", "term_name": "brain", "term_id": "UBERON:0000955", "@id": "/ontology-terms/UBERON:0000955/", "preferred_name": "brain", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"@id": "/ontology-terms/CL:2000043/", "uuid": "2c1ee20b-6f8b-44b6-a92a-b2a08b26fa79", "display_title": "brain pericyte", "@type": ["OntologyTerm", "Item"], "term_name": "brain pericyte", "term_id": "CL:2000043", "status": "released", "preferred_name": "brain pericyte", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_culture_details": [{"@id": "/biosample-cell-cultures/9b31c53f-4acf-4293-9e4c-f8047c7ff1dd/", "uuid": "9b31c53f-4acf-4293-9e4c-f8047c7ff1dd", "status": "released", "display_title": "BiosampleCellCulture from 2018-10-04", "@type": ["BiosampleCellCulture", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"status": "released", "@type": ["ExperimentType", "Item"], "uuid": "832b7989-69ab-4bb6-97b9-195d5dd965ea", "@id": "/experiment-types/dilution-hi-c/", "display_title": "Dilution Hi-C", "title": "Dilution Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNESU7SEN5K/", "status": "released", "uuid": "7ff89bc7-6618-49b7-afcb-4e6635ffc976", "experimentset_type": "replicate", "accession": "4DNESU7SEN5K", "display_title": "4DNESU7SEN5K", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "last_modified": {"date_modified": "2019-04-24T16:09:39.477620+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "alignments (bam)", "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "Hi-C on ENCODE3 cell lines", "condition": "brain pericyte", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "brain pericyte", "lab_name": "4DN DCIC, HMS"}, "title": "4DNFIIOIIDO5", "href": "/files-processed/4DNFIIOIIDO5/@@download/4DNFIIOIIDO5.bam", "upload_key": "8f762e16-c60b-462d-833b-80be1e846aa4/4DNFIIOIIDO5.bam", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8f762e16-c60b-462d-833b-80be1e846aa4/4DNFIIOIIDO5.bam", "tsv_notes": "", "workflow_run_inputs": [{"@id": "/workflow-runs-awsem/8440ef87-2f8d-4ac3-aa08-3fe43baaf0ce/", "uuid": "8440ef87-2f8d-4ac3-aa08-3fe43baaf0ce", "display_title": "bamqc v2 run 2019-12-20 20:04:20.765305", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "bam_qc", "value_qc": {"overall_quality_status": "PASS", "@id": "/quality-metrics-bamqc/c7bc422d-3726-4885-b5ad-8c61ac1aca59/", "@type": ["QualityMetricBamqc", "QualityMetric", "Item"], "display_title": "QualityMetricBamqc from 2019-12-20", "uuid": "c7bc422d-3726-4885-b5ad-8c61ac1aca59", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "bamfile", "value": {"@id": "/files-processed/4DNFIIOIIDO5/", "accession": "4DNFIIOIIDO5", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "8f762e16-c60b-462d-833b-80be1e846aa4", "display_title": "4DNFIIOIIDO5.bam", "file_format": {"@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "file_format": "bam", "status": "released", "@id": "/file-formats/bam/", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsizes", "value": {"@id": "/files-reference/4DNFI823LSII/", "accession": "4DNFI823LSII", "filename": "hg38.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "status": "released", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "display_title": "4DNFI823LSII.chrom.sizes", "file_format": {"@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "file_format": "chromsizes", "status": "released", "@id": "/file-formats/chromsizes/", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "dcfff5c8-2ec0-498b-bc89-074f7b681303", "title": "Quality metrics for annotated bam files", "status": "released", "display_title": "Quality metrics for annotated bam files - 4DNWFBAMQCV1", "@id": "/workflows/4DNWFBAMQCV1/", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/workflow-runs-awsem/1eb73923-7af9-4b78-b7e2-344f9a300e2d/", "uuid": "1eb73923-7af9-4b78-b7e2-344f9a300e2d", "display_title": "re_checker_workflow v1.1 run 2020-04-23 06:22:04.736147", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "motif_percent"}], "input_files": [{"workflow_argument_name": "bamfile", "value": {"@id": "/files-processed/4DNFIIOIIDO5/", "accession": "4DNFIIOIIDO5", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "8f762e16-c60b-462d-833b-80be1e846aa4", "display_title": "4DNFIIOIIDO5.bam", "file_format": {"@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "file_format": "bam", "status": "released", "@id": "/file-formats/bam/", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "e9eefa69-39b1-4e61-8889-5cb1cea401c0", "title": "Restriction Enzyme Check, 1.1", "status": "released", "display_title": "Restriction Enzyme Check, 1.1 - 4DNWFA4YPAGI", "@id": "/workflows/4DNWFA4YPAGI/", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "hi-c-processing-bam 0.2.6 run 2018-10-17 14:22:50.697455", "@id": "/workflow-runs-awsem/143e9968-a27e-4a79-978e-ffc5835fa336/", "uuid": "143e9968-a27e-4a79-978e-ffc5835fa336", "status": "released", "workflow": {"title": "Hi-C Post-alignment Processing 0.2.6", "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "status": "released", "@type": ["Workflow", "Item"], "@id": "/workflows/4DNWFT69RBY4/", "display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "input_files": [{"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI1SOC8J3.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI1SOC8J3/", "uuid": "2e9dd901-44a8-43bf-b958-2dc98ab33e7f", "accession": "4DNFI1SOC8J3", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIJHKPAJ5.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIJHKPAJ5/", "uuid": "4255f972-717b-402e-a28b-5a65ca2de055", "accession": "4DNFIJHKPAJ5", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFINA943ZB.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFINA943ZB/", "uuid": "f1097a4e-bcf1-42f7-a404-b2277c21343a", "accession": "4DNFINA943ZB", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIOJUT8N4.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIOJUT8N4/", "uuid": "4ecb2bc1-cb5b-4fd7-a708-55d4991330b3", "accession": "4DNFIOJUT8N4", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIVSCQZHQ.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIVSCQZHQ/", "uuid": "da04164c-aac1-4e25-94ce-97bb09a3b4ad", "accession": "4DNFIVSCQZHQ", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFISCFJ28E.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFISCFJ28E/", "uuid": "7fcbc941-83b7-4ddc-8523-aa9e4dc4caa0", "accession": "4DNFISCFJ28E", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIYXH474R.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIYXH474R/", "uuid": "6f83e114-43e2-4a6d-86f7-88c752d6742c", "accession": "4DNFIYXH474R", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFINEAEIKB.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFINEAEIKB/", "uuid": "a1719667-cdd2-4e02-9acf-9cadf56f7987", "accession": "4DNFINEAEIKB", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFILLG9PWU.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFILLG9PWU/", "uuid": "325135d4-1328-4d4c-a8c5-c270fb87b9cb", "accession": "4DNFILLG9PWU", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIIIAAOOF.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIIIAAOOF/", "uuid": "817ccd3a-fa7c-43d9-a469-5afc85617041", "accession": "4DNFIIIAAOOF", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIZWA7K15.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIZWA7K15/", "uuid": "d2fc42e2-a397-4b39-9c31-b0b0d48b79bd", "accession": "4DNFIZWA7K15", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI7CWE4UY.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI7CWE4UY/", "uuid": "b05ac7c2-c392-43fc-aa1b-8db2a1f513b1", "accession": "4DNFI7CWE4UY", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFILP49DKJ.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFILP49DKJ/", "uuid": "fc1b6fbe-02da-403c-be70-72fe2960e4d5", "accession": "4DNFILP49DKJ", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFITFPTTHI.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFITFPTTHI/", "uuid": "da97fc9a-c4c6-4adf-b9c5-44823cca7d85", "accession": "4DNFITFPTTHI", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFICQLEPFC.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFICQLEPFC/", "uuid": "a167744b-19dd-4312-bc1b-1dab58f6c0f7", "accession": "4DNFICQLEPFC", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIOYVMR5W.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIOYVMR5W/", "uuid": "76f4c9f5-824c-47c9-81ab-8ac90a54be91", "accession": "4DNFIOYVMR5W", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIUAWUZHJ.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIUAWUZHJ/", "uuid": "05ee9304-bcca-482f-95bd-f6317d87d679", "accession": "4DNFIUAWUZHJ", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIY5Q4TFT.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIY5Q4TFT/", "uuid": "6232c146-3055-4123-912a-68cde6cdd3b1", "accession": "4DNFIY5Q4TFT", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIGU53XFI.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIGU53XFI/", "uuid": "8267a3c7-3279-4524-87e3-9b883e883e39", "accession": "4DNFIGU53XFI", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFISXN5P13.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFISXN5P13/", "uuid": "227bbbd6-0863-4f30-a6b6-b46fc5a37317", "accession": "4DNFISXN5P13", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIDTBLU83.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIDTBLU83/", "uuid": "e50f63d9-0113-402a-9b0b-ef50cf7aef1f", "accession": "4DNFIDTBLU83", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIMPYPAQV.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIMPYPAQV/", "uuid": "1548cc01-c9b0-4a3b-b7f7-159934f4bf76", "accession": "4DNFIMPYPAQV", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI913R9QL.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI913R9QL/", "uuid": "bbf87b65-3297-492d-93dc-d9a31097def6", "accession": "4DNFI913R9QL", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIA8JILTR.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIA8JILTR/", "uuid": "c743e1e4-5466-41dd-8eaa-60f9281cf9f9", "accession": "4DNFIA8JILTR", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI6TFHRVM.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI6TFHRVM/", "uuid": "9130d856-53d8-44b9-9f7f-dc34ab5dcb3d", "accession": "4DNFI6TFHRVM", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI4OA2RFI.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI4OA2RFI/", "uuid": "76995cc1-f9f3-4661-a374-81d517c9c4e0", "accession": "4DNFI4OA2RFI", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIYWJAINQ.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIYWJAINQ/", "uuid": "e79923d6-2821-4d8a-9c9a-69e7dfcb3ef3", "accession": "4DNFIYWJAINQ", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIO3PAEZ9.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIO3PAEZ9/", "uuid": "748b1e8a-acbd-4dfe-94ae-53b043300314", "accession": "4DNFIO3PAEZ9", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIV5E5ZY3.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIV5E5ZY3/", "uuid": "dfab8754-0833-41e1-8db4-87ec38b8cf0a", "accession": "4DNFIV5E5ZY3", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI91LO8O5.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI91LO8O5/", "uuid": "08cad10f-1ec2-4fe5-a0bc-9782dd5d37c6", "accession": "4DNFI91LO8O5", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIPCXLAHX.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIPCXLAHX/", "uuid": "db2154dd-4b08-4238-9f5c-f9bc4f3dc8aa", "accession": "4DNFIPCXLAHX", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIJJA4QN1.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIJJA4QN1/", "uuid": "f2626e3c-1118-4872-bb22-88bd5a93f489", "accession": "4DNFIJJA4QN1", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIX2I34Z3.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIX2I34Z3/", "uuid": "9cecf803-0381-49e1-a6a6-99cd9eabe7e8", "accession": "4DNFIX2I34Z3", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIH7ZBBMS.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIH7ZBBMS/", "uuid": "12b2a988-4b54-408c-b0bc-ef79b07da199", "accession": "4DNFIH7ZBBMS", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFICI7V92N.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFICI7V92N/", "uuid": "db32f5ff-56be-425c-b348-14837d6cb068", "accession": "4DNFICI7V92N", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI1QI2L2Z.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI1QI2L2Z/", "uuid": "24294586-e107-4d28-9df3-811a5908e397", "accession": "4DNFI1QI2L2Z", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIC1CK6KM.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIC1CK6KM/", "uuid": "00e51f1f-62b4-4df1-9622-748b30451b3e", "accession": "4DNFIC1CK6KM", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIJG433UU.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIJG433UU/", "uuid": "18738a8b-868c-4253-ab34-cf81e1ae8156", "accession": "4DNFIJG433UU", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFILGL8VZ2.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFILGL8VZ2/", "uuid": "92fff447-09e1-4f7f-90db-9beff1956c30", "accession": "4DNFILGL8VZ2", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI5NZSXTM.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI5NZSXTM/", "uuid": "21edee92-505a-4bda-b02d-9ac389086182", "accession": "4DNFI5NZSXTM", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIW5GWC4X.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIW5GWC4X/", "uuid": "77ea633f-f33e-4b93-aa18-376808c26fda", "accession": "4DNFIW5GWC4X", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFINO29FLK.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFINO29FLK/", "uuid": "9f79708d-990c-45eb-b3c0-43d57c565b4f", "accession": "4DNFINO29FLK", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIR8CD849.bam", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIR8CD849/", "uuid": "c1f0915f-a678-46a1-ba90-a2456bf5fca6", "accession": "4DNFIR8CD849", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "file_format": "bam", "display_title": "bam", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsize", "value": {"display_title": "4DNFI823LSII.chrom.sizes", "@type": ["FileReference", "File", "Item"], "filename": "hg38.mainonly.chrom.sizes", "status": "released", "@id": "/files-reference/4DNFI823LSII/", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "accession": "4DNFI823LSII", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@id": "/file-formats/chromsizes/", "@type": ["FileFormat", "Item"], "file_format": "chromsizes", "display_title": "chromsizes", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"uuid": "8f762e16-c60b-462d-833b-80be1e846aa4", "accession": "4DNFIIOIIDO5", "display_title": "4DNFIIOIIDO5.bam", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIIOIIDO5/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "bam", "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "status": "released", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "filtered_pairs", "value": {"uuid": "b332a740-b8b7-42e1-bff9-6012418dac73", "accession": "4DNFIT6XTO39", "display_title": "4DNFIT6XTO39.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIT6XTO39/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "source_experiment_sets": [{"status": "released", "display_title": "4DNESU7SEN5K", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNESU7SEN5K/", "uuid": "7ff89bc7-6618-49b7-afcb-4e6635ffc976", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEXV6FOCE7/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2019-04-24T16:09:39.477620+00:00"}}, {"parent": "/files-processed/4DNFIIOIIDO5/", "embedded_path": "last_modified", "item": {"date_modified": "2021-03-28T16:12:43.940793+00:00"}}]}, "validation-errors": []}