{"lab": {"title": "4DN DCIC, HMS", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "status": "current", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"name": "1U01CA200059-01", "center_title": "DCIC - DCIC", "status": "current", "@type": ["Award", "Item"], "description": "DCIC: The goals of the 4D Nucleome (4DN) Data Coordination and Integration Center (DCIC) are to collect, store, curate, display, and analyze data generated in the 4DN Network. We have assembled a team of investigators with a strong track record in analysis of chromatin interaction data, image processing and three-dimensional data visualization, integrative analysis of genomic and epigenomic data, data portal development, large-scale computing, and development of secure and flexible cloud technologies. In Aim 1, we will develop efficient submission pipelines for data and metadata from 4DN data production groups. We will define data/metadata requirements and quality metrics in conjunction with the production groups and ensure that high-quality, well- annotated data become available to the wider scientific community in a timely manner. In Aim 2, we will develop a user-friendly data portal for the broad scientific community. This portal will provide an easy-to-navigate interface for accessing raw and intermediate data files, allow for programmatic access via APIs, and will incorporate novel analysis and visualization tools developed by DCIC as well as other Network members. For computing and storage scalability and cost-effectiveness, significant efforts will be devoted to development and deployment of cloud-based technology. We will conduct tutorials and workshops to facilitate the use of 4DN data and tools by external investigators. In Aim 3, we will coordinate and assist in conducting integrative analysis of the multiple data types. These efforts will examine key questions in higher-order chromatin organization using both sequence and image data, and the tools and algorithms developed here will be incorporated into the data portal for use by other investigators. These three aims will ensure that the data generated in 4DN will have maximal impact for the scientific community.", "@id": "/awards/1U01CA200059-01/", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "project": "4DN", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "4200455e9f2c7dddc55933322e0809b2", "status": "released", "accession": "4DNFI5463BGB", "file_size": 1449179892, "file_type": "contact list-replicate", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFI5463BGB/@@download/4DNFI5463BGB.pairs.gz.px2", "uuid": "f82743c7-9931-4656-ac35-9b6de511e16a", "md5sum": "788d767e8ee54b4cf98835e95acc1869", "status": "released", "filename": "4DNFI5463BGB", "accession": "4DNFI5463BGB", "file_size": 23448067, "upload_key": "f82743c7-9931-4656-ac35-9b6de511e16a/4DNFI5463BGB.pairs.gz.px2", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs_px2", "status": "released", "@id": "/file-formats/pairs_px2/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "display_title": "pairs", "file_format": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2018-10-17T14:15:02.604855+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-17T21:55:54.759738+00:00"}, "public_release": "2018-11-05", "quality_metric": {"@id": "/quality-metrics-pairsqc/0be7c5d7-63be-4bf4-a223-35aa46171273/", "Trans reads": 21289207, "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "display_title": "QualityMetricPairsqc from 2018-10-18", "Cis reads (>20kb)": 37510965, "uuid": "0be7c5d7-63be-4bf4-a223-35aa46171273", "status": "released", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5463BGB/pairsqc_report.html", "Total reads": 74334237, "Short cis reads (<20kb)": 15534065, "quality_metric_summary": [{"title": "Filtered Reads", "value": "74334237", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "50.463", "tooltip": "Percent of filtered reads (=37.51m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "20.898", "tooltip": "Percent of filtered reads (=15.53m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "28.64", "tooltip": "Percent of filtered reads (=21.29m)", "numberType": "percent"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "3", "genome_assembly": "GRCh38", "project_release": "2018-11-05", "contributing_labs": [{"@type": ["Lab", "Item"], "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "status": "current", "uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "display_title": "Job Dekker, UMMS", "@id": "/labs/job-dekker-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}], "source_experiments": ["2d3c95f3-c65e-4ee9-86e4-62518371d80a"], "file_classification": "processed file", "@id": "/files-processed/4DNFI5463BGB/", "@type": ["FileProcessed", "File", "Item"], "uuid": "f82743c7-9931-4656-ac35-9b6de511e16a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFI5463BGB.pairs.gz", "external_references": [], "experiments": [{"accession": "4DNEXQ4ZCIFU", "display_title": "Dilution Hi-C on astrocyte of the spinal cord with HindIII - 4DNEXQ4ZCIFU", "status": "released", "@id": "/experiments-hi-c/4DNEXQ4ZCIFU/", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "2d3c95f3-c65e-4ee9-86e4-62518371d80a", "biosample": {"uuid": "db95b2f5-5b4e-4c04-8205-5790c2ca7974", "status": "released", "display_title": "4DNBSN32YF4W", "@type": ["Biosample", "Item"], "@id": "/biosamples/4DNBSN32YF4W/", "accession": "4DNBSN32YF4W", "modifications_summary": "None", "biosource_summary": "astrocyte of the spinal cord", "treatments_summary": "None", "biosource": [{"biosource_type": "primary cell", "@type": ["Biosource", "Item"], "uuid": "2ac5fbce-a34a-4f70-ae08-499d26299f1d", "display_title": "astrocyte of the spinal cord - 4DNSRAHGM4C5", "status": "released", "cell_line_tier": "Unclassified", "@id": "/biosources/4DNSRAHGM4C5/", "individual": {"@id": "/individuals-human/4DNINC7DHKGV/", "display_title": "4DNINC7DHKGV", "uuid": "83e2002a-7813-486c-9b54-75fca8928e97", "status": "released", "protected_data": false, "@type": ["IndividualHuman", "Individual", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "tissue": {"term_id": "UBERON:0002240", "status": "released", "@id": "/ontology-terms/UBERON:0002240/", "term_name": "spinal cord", "preferred_name": "spinal cord", "display_title": "spinal cord", "@type": ["OntologyTerm", "Item"], "uuid": "111152bc-8535-4448-903e-854af460a233", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"@id": "/ontology-terms/CL:0002606/", "uuid": "58dd90d2-64e3-48f8-99a5-36ebb1475975", "status": "released", "display_title": "astrocyte of the spinal cord", "term_name": "astrocyte of the spinal cord", "preferred_name": "astrocyte of the spinal cord", "term_id": "CL:0002606", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"@id": "/organisms/9606/", "@type": ["Organism", "Item"], "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "scientific_name": "Homo sapiens", "display_title": "H. sapiens", "name": "human", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "cell_culture_details": [{"display_title": "BiosampleCellCulture from 2018-10-04", "uuid": "5840cb8a-190d-4af7-9b3e-0254e1fa8db8", "@type": ["BiosampleCellCulture", "Item"], "@id": "/biosample-cell-cultures/5840cb8a-190d-4af7-9b3e-0254e1fa8db8/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}]}, "experiment_sets": [{"accession": "4DNES4ABKY9M", "uuid": "b3a05c87-bc15-4972-b014-acdc8b19e975", "experimentset_type": "replicate", "status": "released", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNES4ABKY9M/", "display_title": "4DNES4ABKY9M", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_type": {"@id": "/experiment-types/dilution-hi-c/", "uuid": "832b7989-69ab-4bb6-97b9-195d5dd965ea", "status": "released", "@type": ["ExperimentType", "Item"], "display_title": "Dilution Hi-C", "title": "Dilution Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "digestion_enzyme": {"display_title": "HindIII", "@id": "/enzymes/HindIII/", "name": "HindIII", "uuid": "2ace2f00-c913-4bac-a6ef-0b316bc2108e", "@type": ["Enzyme", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2019-04-24T16:09:34.772692+00:00"}}], "file_type_detailed": "contact list-replicate (pairs)", "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "Hi-C on ENCODE3 cell lines", "condition": "astrocyte of the spinal cord", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "astrocyte of the spinal cord", "lab_name": "4DN DCIC, HMS"}, "title": "4DNFI5463BGB", "href": "/files-processed/4DNFI5463BGB/@@download/4DNFI5463BGB.pairs.gz", "upload_key": "f82743c7-9931-4656-ac35-9b6de511e16a/4DNFI5463BGB.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f82743c7-9931-4656-ac35-9b6de511e16a/4DNFI5463BGB.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"display_title": "pairsqc-single 0.2.6 run 2018-10-18 16:03:57.475164", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "083b81c7-a87e-4000-abfc-9f49dd385801", "@id": "/workflow-runs-awsem/083b81c7-a87e-4000-abfc-9f49dd385801/", "workflow": {"@type": ["Workflow", "Item"], "status": "released", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "@id": "/workflows/4DNWFHB26CID/", "title": "PairsQC 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "output_files": [{"workflow_argument_name": "report", "value_qc": {"uuid": "0be7c5d7-63be-4bf4-a223-35aa46171273", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "display_title": "QualityMetricPairsqc from 2018-10-18", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5463BGB/pairsqc_report.html", "status": "released", "overall_quality_status": "PASS", "@id": "/quality-metrics-pairsqc/0be7c5d7-63be-4bf4-a223-35aa46171273/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "f82743c7-9931-4656-ac35-9b6de511e16a", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFI5463BGB.pairs.gz", "accession": "4DNFI5463BGB", "@id": "/files-processed/4DNFI5463BGB/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "file_format": "pairs", "status": "released", "@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsizes", "value": {"status": "released", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823LSII.chrom.sizes", "accession": "4DNFI823LSII", "filename": "hg38.mainonly.chrom.sizes", "@id": "/files-reference/4DNFI823LSII/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "chromsizes", "file_format": "chromsizes", "status": "released", "@id": "/file-formats/chromsizes/", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "hi-c-processing-pairs 0.2.6 run 2018-10-22 03:30:56.424113", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "4572c9b2-fae0-4a21-a154-455212329d44", "@id": "/workflow-runs-awsem/4572c9b2-fae0-4a21-a154-455212329d44/", "workflow": {"@type": ["Workflow", "Item"], "status": "released", "uuid": "c9e0e6f7-b0ed-4a42-9466-cadc2dd84df0", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6 - 4DNWFTKI1QLK", "@id": "/workflows/4DNWFTKI1QLK/", "title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"display_title": "4DNFIA1SQZR5.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIA1SQZR5", "status": "released", "@id": "/files-processed/4DNFIA1SQZR5/", "uuid": "2649a351-0add-49f2-b5cc-b3eab5782117", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@id": "/file-formats/pairs/", "@type": ["FileFormat", "Item"], "display_title": "pairs", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "hic", "value": {"display_title": "4DNFIG4X5Z5F.hic", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIG4X5Z5F", "status": "released", "@id": "/files-processed/4DNFIG4X5Z5F/", "uuid": "0c17d228-5052-4c83-880e-af05118e6929", "file_format": {"uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "file_format": "hic", "@id": "/file-formats/hic/", "@type": ["FileFormat", "Item"], "display_title": "hic", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "mcool", "value": {"display_title": "4DNFIMKLH6KM.mcool", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIMKLH6KM", "status": "released", "@id": "/files-processed/4DNFIMKLH6KM/", "uuid": "ea07dc9f-68f5-40de-993d-b1a31424cba5", "file_format": {"uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "file_format": "mcool", "@id": "/file-formats/mcool/", "@type": ["FileFormat", "Item"], "display_title": "mcool", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "cooler_normvector", "value": {"display_title": "4DNFI9S4F7BS.normvector.juicerformat.gz", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI9S4F7BS", "status": "released", "@id": "/files-processed/4DNFI9S4F7BS/", "uuid": "72d6990f-a28d-4b69-820c-791127be8b3e", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-94f226118b2c", "file_format": "normvector_juicerformat", "@id": "/file-formats/normvector_juicerformat/", "@type": ["FileFormat", "Item"], "display_title": "normvector_juicerformat", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "f82743c7-9931-4656-ac35-9b6de511e16a", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFI5463BGB.pairs.gz", "accession": "4DNFI5463BGB", "@id": "/files-processed/4DNFI5463BGB/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "file_format": "pairs", "status": "released", "@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "d89f3816-509f-4c72-a4c8-4c8799ce0899", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFI7TR3V8M.pairs.gz", "accession": "4DNFI7TR3V8M", "@id": "/files-processed/4DNFI7TR3V8M/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "file_format": "pairs", "status": "released", "@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsizes", "value": {"status": "released", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823LSII.chrom.sizes", "accession": "4DNFI823LSII", "filename": "hg38.mainonly.chrom.sizes", "@id": "/files-reference/4DNFI823LSII/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "chromsizes", "file_format": "chromsizes", "status": "released", "@id": "/file-formats/chromsizes/", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"status": "released", "uuid": "595763c6-58d3-4ec4-8f04-3dbb88ed4736", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823MBKE.txt", "accession": "4DNFI823MBKE", "filename": "GRCh38_HindIII_new.txt", "@id": "/files-reference/4DNFI823MBKE/", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "juicer_format_restriction_site_file", "file_format": "juicer_format_restriction_site_file", "status": "released", "@id": "/file-formats/juicer_format_restriction_site_file/", "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"uuid": "2c872bc7-e99e-4274-aa63-43be81ad1a15", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "hi-c-processing-bam 0.2.6 run 2018-10-17 14:15:02.810716", "@id": "/workflow-runs-awsem/2c872bc7-e99e-4274-aa63-43be81ad1a15/", "status": "released", "input_files": [{"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI2AZ4N7O.bam", "@id": "/files-processed/4DNFI2AZ4N7O/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI2AZ4N7O", "status": "released", "uuid": "d9b6d8dd-05d2-4977-95dd-8f08110375b6", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI8SOQQY9.bam", "@id": "/files-processed/4DNFI8SOQQY9/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI8SOQQY9", "status": "released", "uuid": "f153baff-ef07-4bdf-b71e-1e0c3f54da00", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFICYXU7O6.bam", "@id": "/files-processed/4DNFICYXU7O6/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFICYXU7O6", "status": "released", "uuid": "efea50bc-3f06-49de-b617-948fcaecdccd", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIHSWB25O.bam", "@id": "/files-processed/4DNFIHSWB25O/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIHSWB25O", "status": "released", "uuid": "b36d6962-91e7-4483-90f1-534e67c2e159", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFITLKV63S.bam", "@id": "/files-processed/4DNFITLKV63S/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFITLKV63S", "status": "released", "uuid": "0801781c-a07d-478e-bbc4-b75042e87e2d", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIN1JWWRP.bam", "@id": "/files-processed/4DNFIN1JWWRP/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIN1JWWRP", "status": "released", "uuid": "5e9d4bb8-22fc-4df8-ac19-2b572e1d4fa2", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIM3TFO4Q.bam", "@id": "/files-processed/4DNFIM3TFO4Q/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIM3TFO4Q", "status": "released", "uuid": "33bba708-b1a3-4ef4-a360-9c05c33eede3", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI7YIUGT1.bam", "@id": "/files-processed/4DNFI7YIUGT1/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI7YIUGT1", "status": "released", "uuid": "591cf486-48a4-451c-8c7e-13ff1ced9815", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIPNWUY6W.bam", "@id": "/files-processed/4DNFIPNWUY6W/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIPNWUY6W", "status": "released", "uuid": "717e6f2a-ccd6-4016-9323-b3b545905626", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIGQNJPQ4.bam", "@id": "/files-processed/4DNFIGQNJPQ4/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIGQNJPQ4", "status": "released", "uuid": "6820ffb1-b9c4-47f8-ac6d-bdc502f54d65", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIPNM8CIA.bam", "@id": "/files-processed/4DNFIPNM8CIA/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIPNM8CIA", "status": "released", "uuid": "1503954c-a5c2-43c6-b18d-34fdc128a0a6", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIJJNQDDQ.bam", "@id": "/files-processed/4DNFIJJNQDDQ/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIJJNQDDQ", "status": "released", "uuid": "cdbf3e26-df5b-48c4-a853-025cd349e7c1", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIS43SD2W.bam", "@id": "/files-processed/4DNFIS43SD2W/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIS43SD2W", "status": "released", "uuid": "e3edf6fb-37c7-4ad3-a3f9-56e5c1de28a2", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI537Q9FS.bam", "@id": "/files-processed/4DNFI537Q9FS/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI537Q9FS", "status": "released", "uuid": "4f52eabb-d7b3-4d52-afb3-97c9412a7377", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIBLVXID1.bam", "@id": "/files-processed/4DNFIBLVXID1/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIBLVXID1", "status": "released", "uuid": "1ad10e7a-8b33-460d-8930-3d6dc32c5ae4", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIU5HR9TS.bam", "@id": "/files-processed/4DNFIU5HR9TS/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIU5HR9TS", "status": "released", "uuid": "83a7a12a-8605-4db5-b2d3-57332e67ca98", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIL7A9W6H.bam", "@id": "/files-processed/4DNFIL7A9W6H/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIL7A9W6H", "status": "released", "uuid": "cb93bc73-d029-46c8-84d9-af462954942a", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIOU8BW22.bam", "@id": "/files-processed/4DNFIOU8BW22/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIOU8BW22", "status": "released", "uuid": "d22e592c-c81a-4d0e-80b4-fcafe9d75ff6", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIEEG44WY.bam", "@id": "/files-processed/4DNFIEEG44WY/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIEEG44WY", "status": "released", "uuid": "01118f22-853d-4d70-a0b1-28771da4466e", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFITKWMCK5.bam", "@id": "/files-processed/4DNFITKWMCK5/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFITKWMCK5", "status": "released", "uuid": "369bed51-89d8-4961-a5c7-042cf08c89db", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI4JNQGVE.bam", "@id": "/files-processed/4DNFI4JNQGVE/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI4JNQGVE", "status": "released", "uuid": "c004771d-ef7c-4b63-94d7-ba07febae570", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIIMMOK1Z.bam", "@id": "/files-processed/4DNFIIMMOK1Z/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIIMMOK1Z", "status": "released", "uuid": "e950a39e-54c0-46ca-a679-3d2942ac91cc", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI3HWJZ66.bam", "@id": "/files-processed/4DNFI3HWJZ66/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI3HWJZ66", "status": "released", "uuid": "8d7c031d-8890-44fd-8673-697f375f969f", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIH1U27NI.bam", "@id": "/files-processed/4DNFIH1U27NI/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIH1U27NI", "status": "released", "uuid": "42508527-e8a2-4d30-ac04-e1a0a44890d2", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIIVWMSFW.bam", "@id": "/files-processed/4DNFIIVWMSFW/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIIVWMSFW", "status": "released", "uuid": "c6fe5f0a-4de3-43fb-a3f6-4af11b7d99b0", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIH1LM6YI.bam", "@id": "/files-processed/4DNFIH1LM6YI/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIH1LM6YI", "status": "released", "uuid": "3b086404-5461-4989-bd78-942eac0b508e", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI5GTLZM3.bam", "@id": "/files-processed/4DNFI5GTLZM3/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI5GTLZM3", "status": "released", "uuid": "7bbd2584-47b1-409c-b551-6cb1d1828270", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFISPC8JEC.bam", "@id": "/files-processed/4DNFISPC8JEC/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFISPC8JEC", "status": "released", "uuid": "e4708a25-1c9a-4652-8d2b-3acefcbdbce3", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIF6GFBSU.bam", "@id": "/files-processed/4DNFIF6GFBSU/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIF6GFBSU", "status": "released", "uuid": "6d00b690-c052-445b-a2be-65ba4aff8670", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI4AKPPD7.bam", "@id": "/files-processed/4DNFI4AKPPD7/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI4AKPPD7", "status": "released", "uuid": "810fa4a3-588e-43a0-9af6-13d876b965e3", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFI5TR63HS.bam", "@id": "/files-processed/4DNFI5TR63HS/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFI5TR63HS", "status": "released", "uuid": "890afa9b-5db3-469d-9a5b-8b43a38fa369", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIDBQB8WM.bam", "@id": "/files-processed/4DNFIDBQB8WM/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIDBQB8WM", "status": "released", "uuid": "21d0137b-9ad2-4ba8-b09e-7f30f2b9d04f", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"display_title": "4DNFIZVLX57W.bam", "@id": "/files-processed/4DNFIZVLX57W/", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIZVLX57W", "status": "released", "uuid": "827f9129-61e3-40b0-8a02-f38a8342a8d7", "file_format": {"file_format": "bam", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsize", "value": {"display_title": "4DNFI823LSII.chrom.sizes", "@id": "/files-reference/4DNFI823LSII/", "@type": ["FileReference", "File", "Item"], "accession": "4DNFI823LSII", "status": "released", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "filename": "hg38.mainonly.chrom.sizes", "file_format": {"file_format": "chromsizes", "@id": "/file-formats/chromsizes/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "status": "released", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"accession": "4DNFIVOMQVTQ", "@id": "/files-processed/4DNFIVOMQVTQ/", "display_title": "4DNFIVOMQVTQ.bam", "@type": ["FileProcessed", "File", "Item"], "uuid": "038c372f-8d24-4130-a5d4-7f2fa3c5b5b8", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"status": "released", "display_title": "bam", "@type": ["FileFormat", "Item"], "file_format": "bam", "@id": "/file-formats/bam/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "filtered_pairs", "value": {"accession": "4DNFI5463BGB", "@id": "/files-processed/4DNFI5463BGB/", "display_title": "4DNFI5463BGB.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "uuid": "f82743c7-9931-4656-ac35-9b6de511e16a", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"status": "released", "display_title": "pairs", "@type": ["FileFormat", "Item"], "file_format": "pairs", "@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "workflow": {"display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "@type": ["Workflow", "Item"], "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "status": "released", "@id": "/workflows/4DNWFT69RBY4/", "title": "Hi-C Post-alignment Processing 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5463BGB/4DNFI5463BGB.plot_table.out", "source_experiment_sets": [{"@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNES4ABKY9M/", "status": "released", "uuid": "b3a05c87-bc15-4972-b014-acdc8b19e975", "display_title": "4DNES4ABKY9M", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEXQ4ZCIFU/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2019-04-24T16:09:34.772692+00:00"}}, {"parent": "/files-processed/4DNFI5463BGB/", "embedded_path": "last_modified", "item": {"date_modified": "2021-05-17T21:55:54.759738+00:00"}}]}, "validation-errors": []}