{"lab": {"@type": ["Lab", "Item"], "correspondence": [{"contact_email": "YmVub2l0LmJydW5lYXVAZ2xhZHN0b25lLnVjc2YuZWR1", "@id": "/users/c015dffd-4ca1-4070-905f-8a04b3754b2b/", "display_title": "Benoit Bruneau"}], "status": "current", "display_title": "Benoit Bruneau, UCSF", "uuid": "4dfac8f5-a868-4b29-9c11-a0932130e121", "@id": "/labs/benoit-bruneau-lab/", "title": "Benoit Bruneau, UCSF", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.4dfac8f5-a868-4b29-9c11-a0932130e121"]}}, "award": {"center": "External", "@id": "/awards/external-award/", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "center_title": "External", "display_title": "EXTERNAL AWARD", "description": "Funding source is from outside 4DN.", "@type": ["Award", "Item"], "status": "current", "project": "External", "name": "external-award", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "788334e86982e22c9c31590799e002ad", "status": "released", "aliases": ["4dn-dcic-lab:SRR5517517_1_fq"], "dbxrefs": ["SRA:SRR5517517"], "filename": "SRR5517517_1.fastq.gz", "accession": "4DNFIR88PEBR", "file_size": 6685899836, "file_type": "reads", "instrument": "Illumina NextSeq 500", "paired_end": "1", "file_format": {"@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "status": "released", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "read_length": 76, "date_created": "2018-11-07T21:10:43.392197+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2020-04-08T06:07:59.796873+00:00"}, "related_files": [{"file": {"accession": "4DNFIDHXOQBT", "uuid": "55dbfbaa-e813-4dcf-8a33-a9d5a101858c", "@id": "/files-fastq/4DNFIDHXOQBT/", "display_title": "4DNFIDHXOQBT.fastq.gz", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "relationship_type": "paired with"}], "content_md5sum": "37a408d2cb2d332ff371f8a66ba69031", "public_release": "2018-12-06", "quality_metric": {"Sequence length": "76", "Total Sequences": 136806860, "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "display_title": "QualityMetricFastqc from 2018-11-20", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR88PEBR/fastqc_report.html", "uuid": "8ced3e8d-3f64-4d6e-816e-8ac44b29533b", "status": "released", "@id": "/quality-metrics-fastqc/8ced3e8d-3f64-4d6e-816e-8ac44b29533b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "2", "file_first_line": "@1", "project_release": "2018-12-06", "file_classification": "raw file", "beta_actin_sense_count": 1094, "beta_actin_antisense_count": 1129, "@id": "/files-fastq/4DNFIR88PEBR/", "@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIR88PEBR.fastq.gz", "external_references": [{"ref": "SRA:SRR5517517", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5517517"}], "experiments": [{"display_title": "RNA-seq on ES-E14TG2a - 4DNEXD31QZTP", "uuid": "b0bafc6b-6d47-4059-bb1e-9a76fde820d4", "accession": "4DNEXD31QZTP", "@type": ["ExperimentSeq", "Experiment", "Item"], "status": "released", "@id": "/experiments-seq/4DNEXD31QZTP/", "biosample": {"@id": "/biosamples/4DNBS8H6MMZ5/", "display_title": "4DNBS8H6MMZ5", "treatments_summary": "indole-3-acetic acid treatment (500.0 \u03bcM, 4.0d at 4.0\u00b0C)", "accession": "4DNBS8H6MMZ5", "@type": ["Biosample", "Item"], "biosource_summary": "ES-E14TG2a", "uuid": "9bf4eedd-1d1e-434d-be35-985c56b4a864", "modifications_summary": "None", "status": "released", "biosource": [{"display_title": "ES-E14TG2a - 4DNSRQDR15QF", "uuid": "09df211d-62d9-439a-b546-81a8a6f463bc", "@id": "/biosources/4DNSRQDR15QF/", "status": "released", "biosource_type": "stem cell derived cell line", "cell_line_tier": "Unclassified", "@type": ["Biosource", "Item"], "individual": {"@id": "/individuals-mouse/4DNINOXRXEQP/", "uuid": "1b2fa35a-6173-431f-b2e2-db2e18017870", "display_title": "4DNINOXRXEQP", "status": "released", "@type": ["IndividualMouse", "Individual", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"@id": "/organisms/10090/", "name": "mouse", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "status": "released", "@type": ["Organism", "Item"], "scientific_name": "Mus musculus", "display_title": "M. musculus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "display_title": "stem cell", "preferred_name": "stem cell", "term_name": "stem cell", "term_id": "CL:0000034", "@id": "/ontology-terms/CL:0000034/", "@type": ["OntologyTerm", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"@id": "/ontology-terms/EFO:0006275/", "uuid": "2262fd9b-3185-4c65-8ad5-bfe65e986954", "@type": ["OntologyTerm", "Item"], "preferred_name": "ES-E14TG2a", "status": "released", "term_name": "ES-E14TG2a", "term_id": "EFO:0006275", "display_title": "ES-E14TG2a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"status": "released", "uuid": "5c59f02e-9fa3-4a04-b01e-0cf18447d632", "display_title": "4DNESJYLRY6V", "@id": "/experiment-set-replicates/4DNESJYLRY6V/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "experimentset_type": "replicate", "accession": "4DNESJYLRY6V", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "last_modified": {"date_modified": "2019-12-03T20:08:32.453634+00:00"}, "experiment_type": {"uuid": "19f848e6-7c52-4b8b-8aa8-e82ea0a968ce", "@id": "/experiment-types/rna-seq/", "@type": ["ExperimentType", "Item"], "title": "RNA-seq", "status": "released", "display_title": "RNA-seq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "reads (fastq)", "track_and_facet_info": {"experimental_lab": "Benoit Bruneau, UCSF", "experiment_type": "RNA-seq", "experiment_bucket": "raw file", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "ES-E14TG2a", "lab_name": "Benoit Bruneau, UCSF"}, "title": "4DNFIR88PEBR", "href": "/files-fastq/4DNFIR88PEBR/@@download/4DNFIR88PEBR.fastq.gz", "upload_key": "e74150b8-4f40-4e7a-87c7-570d827d9dd9/4DNFIR88PEBR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e74150b8-4f40-4e7a-87c7-570d827d9dd9/4DNFIR88PEBR.fastq.gz", "tsv_notes": "", "workflow_run_inputs": [{"uuid": "853f6ac7-9d40-4ced-83ef-b78c4ad0ce74", "@id": "/workflow-runs-awsem/853f6ac7-9d40-4ced-83ef-b78c4ad0ce74/", "display_title": "rna-strandedness v2 run 2019-11-27 11:35:15.977941", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "match_count"}], "input_files": [{"workflow_argument_name": "ACTB_reference", "value": {"@type": ["FileReference", "File", "Item"], "uuid": "b59c4b30-52c9-4b30-a455-dfb491df940a", "accession": "4DNFIAQ4BI8Y", "@id": "/files-reference/4DNFIAQ4BI8Y/", "status": "released", "filename": "ACTB_mouse_reference_21kmer.txt", "display_title": "4DNFIAQ4BI8Y.txt", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/txt/", "status": "released", "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3", "display_title": "txt", "file_format": "txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "fastq", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "accession": "4DNFIR88PEBR", "@id": "/files-fastq/4DNFIR88PEBR/", "status": "released", "filename": "SRR5517517_1.fastq.gz", "display_title": "4DNFIR88PEBR.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Beta-actin gene 21kmer count for RNA-seq data", "display_title": "Beta-actin gene 21kmer count for RNA-seq data - 4DNWFRNASDV1", "uuid": "af97597e-877a-40b7-b211-98ec0cfb17b4", "@id": "/workflows/4DNWFRNASDV1/", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "6e3a86a6-70da-41cf-9768-b83f5d7b144a", "@id": "/workflow-runs-awsem/6e3a86a6-70da-41cf-9768-b83f5d7b144a/", "display_title": "encode-rnaseq-unstranded 1.1 run 2019-12-01 21:36:52.965905", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "rna.outbam", "value": {"@type": ["FileProcessed", "File", "Item"], "uuid": "30b507c4-7f69-458d-9a6a-be8285c8662b", "display_title": "4DNFIV3FK9LC.bam", "@id": "/files-processed/4DNFIV3FK9LC/", "accession": "4DNFIV3FK9LC", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "file_format": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.outbw", "value": {"@type": ["FileProcessed", "File", "Item"], "uuid": "e27e10b6-faaf-46f2-a44d-db4469bd8419", "display_title": "4DNFIWWZOVM3.bw", "@id": "/files-processed/4DNFIWWZOVM3/", "accession": "4DNFIWWZOVM3", "status": "released", "file_format": {"@id": "/file-formats/bw/", "@type": ["FileFormat", "Item"], "display_title": "bw", "file_format": "bw", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.gene_expression", "value": {"@type": ["FileProcessed", "File", "Item"], "uuid": "d8dda13f-6e77-48d2-aaed-40af3d27fc02", "display_title": "4DNFIMWRNJZO.tsv", "@id": "/files-processed/4DNFIMWRNJZO/", "accession": "4DNFIMWRNJZO", "status": "released", "file_format": {"@id": "/file-formats/tsv/", "@type": ["FileFormat", "Item"], "display_title": "tsv", "file_format": "tsv", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.isoform_expression", "value": {"@type": ["FileProcessed", "File", "Item"], "uuid": "5a2cd234-eed9-4618-a479-06cdaecfd87d", "display_title": "4DNFI5WKCB5X.tsv", "@id": "/files-processed/4DNFI5WKCB5X/", "accession": "4DNFI5WKCB5X", "status": "released", "file_format": {"@id": "/file-formats/tsv/", "@type": ["FileFormat", "Item"], "display_title": "tsv", "file_format": "tsv", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.anno_flagstat_qc_json", "value_qc": {"overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "uuid": "66895a4b-eb89-45ef-9e52-b37f234942ec", "display_title": "QualityMetricRnaseq from 2019-12-02", "@id": "/quality-metrics-rnaseq/66895a4b-eb89-45ef-9e52-b37f234942ec/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.genome_flagstat_qc_json", "value_qc": {"overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "uuid": "9eb1ecda-0a35-48e3-b106-04e17b2f2ee8", "display_title": "QualityMetricRnaseq from 2019-12-02", "@id": "/quality-metrics-rnaseq/9eb1ecda-0a35-48e3-b106-04e17b2f2ee8/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.align_log_json", "value_qc": {"overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "uuid": "9eb1ecda-0a35-48e3-b106-04e17b2f2ee8", "display_title": "QualityMetricRnaseq from 2019-12-02", "@id": "/quality-metrics-rnaseq/9eb1ecda-0a35-48e3-b106-04e17b2f2ee8/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.qc_json", "value_qc": {"overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "uuid": "66895a4b-eb89-45ef-9e52-b37f234942ec", "display_title": "QualityMetricRnaseq from 2019-12-02", "@id": "/quality-metrics-rnaseq/66895a4b-eb89-45ef-9e52-b37f234942ec/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "rna.align_index", "value": {"@type": ["FileReference", "File", "Item"], "uuid": "7ae5a4a4-c53a-4344-ab3f-ebbf487b5efd", "accession": "4DNFINJIU765", "@id": "/files-reference/4DNFINJIU765/", "status": "released", "display_title": "4DNFINJIU765.starIndex.tgz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/starIndex/", "status": "released", "uuid": "192d6d3a-6975-4aa5-bcca-38b7dac97ac1", "display_title": "starIndex", "file_format": "starIndex", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.chrom_sizes", "value": {"@type": ["FileReference", "File", "Item"], "uuid": "be0a9819-d2ce-4422-be4b-234fb1677dd9", "accession": "4DNFIBP173GC", "@id": "/files-reference/4DNFIBP173GC/", "status": "released", "filename": "mm10_no_alt.chrom.sizes", "display_title": "4DNFIBP173GC.chrom.sizes", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/chromsizes/", "status": "released", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "display_title": "chromsizes", "file_format": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.fastqs_R1", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "accession": "4DNFIR88PEBR", "@id": "/files-fastq/4DNFIR88PEBR/", "status": "released", "filename": "SRR5517517_1.fastq.gz", "display_title": "4DNFIR88PEBR.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.fastqs_R2", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "55dbfbaa-e813-4dcf-8a33-a9d5a101858c", "accession": "4DNFIDHXOQBT", "@id": "/files-fastq/4DNFIDHXOQBT/", "status": "released", "filename": "SRR5517517_2.fastq.gz", "display_title": "4DNFIDHXOQBT.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.rna_qc_tr_id_to_gene_type_tsv", "value": {"@type": ["FileReference", "File", "Item"], "uuid": "fa94b4cb-3d22-4edd-afaa-f2f98bbf9ecc", "accession": "4DNFINBJ25DT", "@id": "/files-reference/4DNFINBJ25DT/", "status": "released", "display_title": "4DNFINBJ25DT.tsv", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/tsv/", "status": "released", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "display_title": "tsv", "file_format": "tsv", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.rsem_index", "value": {"@type": ["FileReference", "File", "Item"], "uuid": "2995ef5c-4c3f-45d9-bd45-a7b2af4ccb59", "accession": "4DNFI2GFI8KN", "@id": "/files-reference/4DNFI2GFI8KN/", "status": "released", "display_title": "4DNFI2GFI8KN.rsemindex.tgz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/rsemIndex/", "status": "released", "uuid": "d444ba45-6cfb-4524-9637-9c55ab39abe4", "display_title": "rsemIndex", "file_format": "rsemIndex", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "RNA-seq data processing pipeline, unstranded, 1.1", "display_title": "RNA-seq data processing pipeline, unstranded, 1.1 - 4DNWFBJ47YRR", "uuid": "37458aca-8319-4e06-9cf2-da770f1a6252", "@id": "/workflows/4DNWFBJ47YRR/", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "904ac511-2c00-4ff8-b0b8-9c473a60ef95", "@id": "/workflow-runs-awsem/904ac511-2c00-4ff8-b0b8-9c473a60ef95/", "display_title": "md5 0.2.6 run 2018-11-19 22:12:35.139109", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "report"}], "input_files": [{"workflow_argument_name": "input_file", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "accession": "4DNFIR88PEBR", "@id": "/files-fastq/4DNFIR88PEBR/", "status": "released", "filename": "SRR5517517_1.fastq.gz", "display_title": "4DNFIR88PEBR.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "md5 0.2.6", "display_title": "md5 0.2.6 - 4DNWF2HFF82B", "uuid": "c77a117b-9a58-477e-aaa5-291a109a99f6", "@id": "/workflows/4DNWF2HFF82B/", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "5a997050-e31e-429e-8355-88c19a0c8909", "@id": "/workflow-runs-awsem/5a997050-e31e-429e-8355-88c19a0c8909/", "display_title": "fastqc v1 run 2018-11-19 22:12:38.704819", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "report_zip", "value_qc": {"overall_quality_status": "PASS", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "status": "released", "uuid": "8ced3e8d-3f64-4d6e-816e-8ac44b29533b", "display_title": "QualityMetricFastqc from 2018-11-20", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR88PEBR/fastqc_report.html", "@id": "/quality-metrics-fastqc/8ced3e8d-3f64-4d6e-816e-8ac44b29533b/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "input_fastq", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "accession": "4DNFIR88PEBR", "@id": "/files-fastq/4DNFIR88PEBR/", "status": "released", "filename": "SRR5517517_1.fastq.gz", "display_title": "4DNFIR88PEBR.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "FastQC v1", "display_title": "FastQC v1 - 4DNWFAW5VTA5", "uuid": "2324ad76-ff37-4157-8bcc-3ce72b7dace9", "@id": "/workflows/4DNWFAW5VTA5/", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "72bc4167-8da3-4b56-b08f-7fbdd157f837", "@id": "/workflow-runs-awsem/72bc4167-8da3-4b56-b08f-7fbdd157f837/", "display_title": "fastq-first-line v2 run 2020-04-08 06:02:49.476679", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "output_files": [{"workflow_argument_name": "first_line"}], "input_files": [{"workflow_argument_name": "fastq", "value": {"@type": ["FileFastq", "File", "Item"], "uuid": "e74150b8-4f40-4e7a-87c7-570d827d9dd9", "accession": "4DNFIR88PEBR", "@id": "/files-fastq/4DNFIR88PEBR/", "status": "released", "filename": "SRR5517517_1.fastq.gz", "display_title": "4DNFIR88PEBR.fastq.gz", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "fastq", "file_format": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Getting first line of fastq file", "display_title": "Getting first line of fastq file - 4DNWFASTQFO1", "uuid": "93a1a931-d55d-4623-adfb-0fa735daf6ae", "@id": "/workflows/4DNWFASTQFO1/", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}