{"lab": {"uuid": "4dfac8f5-a868-4b29-9c11-a0932130e121", "title": "Benoit Bruneau, UCSF", "@type": ["Lab", "Item"], "@id": "/labs/benoit-bruneau-lab/", "correspondence": [{"contact_email": "YmVub2l0LmJydW5lYXVAZ2xhZHN0b25lLnVjc2YuZWR1", "@id": "/users/c015dffd-4ca1-4070-905f-8a04b3754b2b/", "display_title": "Benoit Bruneau"}], "display_title": "Benoit Bruneau, UCSF", "status": "current", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.4dfac8f5-a868-4b29-9c11-a0932130e121"]}}, "award": {"center_title": "External", "@id": "/awards/external-award/", "status": "current", "@type": ["Award", "Item"], "project": "External", "center": "External", "display_title": "EXTERNAL AWARD", "description": "Funding source is from outside 4DN.", "name": "external-award", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "ddb4af4d1fba45ae853dfd19f4c04aeb", "status": "released", "aliases": ["4dn-dcic-lab:SRR5517523_2_fq"], "dbxrefs": ["SRA:SRR5517523"], "filename": "SRR5517523_2.fastq.gz", "accession": "4DNFIHSN1UJJ", "file_size": 1631578272, "file_type": "reads", "instrument": "Illumina NextSeq 500", "paired_end": "2", "file_format": {"@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "read_length": 76, "date_created": "2018-11-07T21:10:55.181800+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2020-04-08T06:05:49.912783+00:00"}, "related_files": [{"file": {"accession": "4DNFIEZ794QZ", "status": "released", "display_title": "4DNFIEZ794QZ.fastq.gz", "@type": ["FileFastq", "File", "Item"], "uuid": "c1f490d0-5c16-41ea-bb60-de40892d186f", "@id": "/files-fastq/4DNFIEZ794QZ/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "relationship_type": "paired with"}], "content_md5sum": "00a923b335f20cad396c5b3c337d4978", "public_release": "2018-12-06", "quality_metric": {"url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHSN1UJJ/fastqc_report.html", "uuid": "4e23fae4-015d-4f29-b9a8-1490585d0853", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "status": "released", "Total Sequences": 37444268, "Sequence length": "76", "@id": "/quality-metrics-fastqc/4e23fae4-015d-4f29-b9a8-1490585d0853/", "display_title": "QualityMetricFastqc from 2018-11-19", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "2", "file_first_line": "@1", "project_release": "2018-12-06", "file_classification": "raw file", "beta_actin_sense_count": 587, "beta_actin_antisense_count": 442, "@id": "/files-fastq/4DNFIHSN1UJJ/", "@type": ["FileFastq", "File", "Item"], "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIHSN1UJJ.fastq.gz", "external_references": [{"ref": "SRA:SRR5517523", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5517523"}], "experiments": [{"accession": "4DNEXKLSLWNG", "@type": ["ExperimentSeq", "Experiment", "Item"], "uuid": "90a2fc30-3a08-4afa-b01b-67716a7ca4c8", "display_title": "RNA-seq on ES-E14TG2a - 4DNEXKLSLWNG", "status": "released", "@id": "/experiments-seq/4DNEXKLSLWNG/", "biosample": {"display_title": "4DNBSZY3QD24", "accession": "4DNBSZY3QD24", "treatments_summary": "indole-3-acetic acid treatment (500.0 \u03bcM, 4.0d at 4.0\u00b0C)", "biosource_summary": "ES-E14TG2a", "modifications_summary": "None", "status": "released", "@type": ["Biosample", "Item"], "uuid": "8928e0c5-4ab3-4050-932c-b1d1646b6061", "@id": "/biosamples/4DNBSZY3QD24/", "biosource": [{"display_title": "ES-E14TG2a - 4DNSRQDR15QF", "@id": "/biosources/4DNSRQDR15QF/", "@type": ["Biosource", "Item"], "uuid": "09df211d-62d9-439a-b546-81a8a6f463bc", "cell_line_tier": "Unclassified", "biosource_type": "stem cell derived cell line", "status": "released", "cell_line": {"@id": "/ontology-terms/EFO:0006275/", "uuid": "2262fd9b-3185-4c65-8ad5-bfe65e986954", "preferred_name": "ES-E14TG2a", "status": "released", "display_title": "ES-E14TG2a", "term_name": "ES-E14TG2a", "@type": ["OntologyTerm", "Item"], "term_id": "EFO:0006275", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"status": "released", "display_title": "M. musculus", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "name": "mouse", "@id": "/organisms/10090/", "@type": ["Organism", "Item"], "scientific_name": "Mus musculus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"term_id": "CL:0000034", "preferred_name": "stem cell", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "display_title": "stem cell", "status": "released", "@id": "/ontology-terms/CL:0000034/", "term_name": "stem cell", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"uuid": "1b2fa35a-6173-431f-b2e2-db2e18017870", "@type": ["IndividualMouse", "Individual", "Item"], "status": "released", "display_title": "4DNINOXRXEQP", "@id": "/individuals-mouse/4DNINOXRXEQP/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"accession": "4DNESJYLRY6V", "@id": "/experiment-set-replicates/4DNESJYLRY6V/", "experimentset_type": "replicate", "uuid": "5c59f02e-9fa3-4a04-b01e-0cf18447d632", "status": "released", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "display_title": "4DNESJYLRY6V", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_type": {"title": "RNA-seq", "uuid": "19f848e6-7c52-4b8b-8aa8-e82ea0a968ce", "status": "released", "@type": ["ExperimentType", "Item"], "@id": "/experiment-types/rna-seq/", "display_title": "RNA-seq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "last_modified": {"date_modified": "2019-12-03T20:08:39.064305+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "reads (fastq)", "track_and_facet_info": {"experimental_lab": "Benoit Bruneau, UCSF", "experiment_type": "RNA-seq", "experiment_bucket": "raw file", "replicate_info": "Biorep 3, Techrep 1", "biosource_name": "ES-E14TG2a", "lab_name": "Benoit Bruneau, UCSF"}, "title": "4DNFIHSN1UJJ", "href": "/files-fastq/4DNFIHSN1UJJ/@@download/4DNFIHSN1UJJ.fastq.gz", "upload_key": "3af2b456-d243-4311-a371-4194d016cf27/4DNFIHSN1UJJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3af2b456-d243-4311-a371-4194d016cf27/4DNFIHSN1UJJ.fastq.gz", "tsv_notes": "", "workflow_run_inputs": [{"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "4aeaf1ac-c4d3-4d96-982d-dd771f55cb11", "display_title": "rna-strandedness v2 run 2019-11-27 11:34:15.876576", "status": "released", "@id": "/workflow-runs-awsem/4aeaf1ac-c4d3-4d96-982d-dd771f55cb11/", "output_files": [{"workflow_argument_name": "match_count"}], "input_files": [{"workflow_argument_name": "ACTB_reference", "value": {"display_title": "4DNFIAQ4BI8Y.txt", "accession": "4DNFIAQ4BI8Y", "status": "released", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIAQ4BI8Y/", "filename": "ACTB_mouse_reference_21kmer.txt", "uuid": "b59c4b30-52c9-4b30-a455-dfb491df940a", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3", "file_format": "txt", "display_title": "txt", "@id": "/file-formats/txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "fastq", "value": {"display_title": "4DNFIHSN1UJJ.fastq.gz", "accession": "4DNFIHSN1UJJ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHSN1UJJ/", "filename": "SRR5517523_2.fastq.gz", "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "af97597e-877a-40b7-b211-98ec0cfb17b4", "@id": "/workflows/4DNWFRNASDV1/", "title": "Beta-actin gene 21kmer count for RNA-seq data", "display_title": "Beta-actin gene 21kmer count for RNA-seq data - 4DNWFRNASDV1", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "05187d24-9d4c-42eb-9a9e-345132f3acd8", "display_title": "encode-rnaseq-unstranded 1.1 run 2019-11-28 01:56:08.966500", "status": "released", "@id": "/workflow-runs-awsem/05187d24-9d4c-42eb-9a9e-345132f3acd8/", "output_files": [{"workflow_argument_name": "rna.outbam", "value": {"accession": "4DNFI7IF6DCT", "display_title": "4DNFI7IF6DCT.bam", "uuid": "03c7d87e-1f39-4a6b-b33c-e2b4f24f724a", "@id": "/files-processed/4DNFI7IF6DCT/", "status": "released", "@type": ["FileProcessed", "File", "Item"], "file_format": {"display_title": "bam", "@type": ["FileFormat", "Item"], "file_format": "bam", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.outbw", "value": {"accession": "4DNFICMZ6F1N", "display_title": "4DNFICMZ6F1N.bw", "uuid": "beab16d9-2e99-4daa-985e-49f25a84fb86", "@id": "/files-processed/4DNFICMZ6F1N/", "status": "released", "@type": ["FileProcessed", "File", "Item"], "file_format": {"display_title": "bw", "@type": ["FileFormat", "Item"], "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.gene_expression", "value": {"accession": "4DNFIEW3PKCH", "display_title": "4DNFIEW3PKCH.tsv", "uuid": "2b5975db-0208-4832-858d-cfd01a48b631", "@id": "/files-processed/4DNFIEW3PKCH/", "status": "released", "@type": ["FileProcessed", "File", "Item"], "file_format": {"display_title": "tsv", "@type": ["FileFormat", "Item"], "file_format": "tsv", "status": "released", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "@id": "/file-formats/tsv/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.isoform_expression", "value": {"accession": "4DNFIHODL6YN", "display_title": "4DNFIHODL6YN.tsv", "uuid": "09bb4dae-6ad9-43b6-b6ef-74dab25e34ca", "@id": "/files-processed/4DNFIHODL6YN/", "status": "released", "@type": ["FileProcessed", "File", "Item"], "file_format": {"display_title": "tsv", "@type": ["FileFormat", "Item"], "file_format": "tsv", "status": "released", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "@id": "/file-formats/tsv/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.anno_flagstat_qc_json", "value_qc": {"@id": "/quality-metrics-rnaseq/f56a9770-bd13-45c2-86d5-ddd2d8649766/", "uuid": "f56a9770-bd13-45c2-86d5-ddd2d8649766", "display_title": "QualityMetricRnaseq from 2019-11-28", "overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.genome_flagstat_qc_json", "value_qc": {"@id": "/quality-metrics-rnaseq/b0468ee2-b45f-4f51-a393-6cc64a9ffc2d/", "uuid": "b0468ee2-b45f-4f51-a393-6cc64a9ffc2d", "display_title": "QualityMetricRnaseq from 2019-11-28", "overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.align_log_json", "value_qc": {"@id": "/quality-metrics-rnaseq/b0468ee2-b45f-4f51-a393-6cc64a9ffc2d/", "uuid": "b0468ee2-b45f-4f51-a393-6cc64a9ffc2d", "display_title": "QualityMetricRnaseq from 2019-11-28", "overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.qc_json", "value_qc": {"@id": "/quality-metrics-rnaseq/f56a9770-bd13-45c2-86d5-ddd2d8649766/", "uuid": "f56a9770-bd13-45c2-86d5-ddd2d8649766", "display_title": "QualityMetricRnaseq from 2019-11-28", "overall_quality_status": "PASS", "@type": ["QualityMetricRnaseq", "QualityMetric", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "rna.align_index", "value": {"display_title": "4DNFINJIU765.starIndex.tgz", "accession": "4DNFINJIU765", "status": "released", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFINJIU765/", "uuid": "7ae5a4a4-c53a-4344-ab3f-ebbf487b5efd", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "192d6d3a-6975-4aa5-bcca-38b7dac97ac1", "file_format": "starIndex", "display_title": "starIndex", "@id": "/file-formats/starIndex/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.chrom_sizes", "value": {"display_title": "4DNFIBP173GC.chrom.sizes", "accession": "4DNFIBP173GC", "status": "released", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIBP173GC/", "filename": "mm10_no_alt.chrom.sizes", "uuid": "be0a9819-d2ce-4422-be4b-234fb1677dd9", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "file_format": "chromsizes", "display_title": "chromsizes", "@id": "/file-formats/chromsizes/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.fastqs_R1", "value": {"display_title": "4DNFIEZ794QZ.fastq.gz", "accession": "4DNFIEZ794QZ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIEZ794QZ/", "filename": "SRR5517523_1.fastq.gz", "uuid": "c1f490d0-5c16-41ea-bb60-de40892d186f", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.fastqs_R2", "value": {"display_title": "4DNFIHSN1UJJ.fastq.gz", "accession": "4DNFIHSN1UJJ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHSN1UJJ/", "filename": "SRR5517523_2.fastq.gz", "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.rna_qc_tr_id_to_gene_type_tsv", "value": {"display_title": "4DNFINBJ25DT.tsv", "accession": "4DNFINBJ25DT", "status": "released", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFINBJ25DT/", "uuid": "fa94b4cb-3d22-4edd-afaa-f2f98bbf9ecc", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "5e8f64b8-6323-410a-8af2-05aba0472f8e", "file_format": "tsv", "display_title": "tsv", "@id": "/file-formats/tsv/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "rna.rsem_index", "value": {"display_title": "4DNFI2GFI8KN.rsemindex.tgz", "accession": "4DNFI2GFI8KN", "status": "released", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI2GFI8KN/", "uuid": "2995ef5c-4c3f-45d9-bd45-a7b2af4ccb59", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "d444ba45-6cfb-4524-9637-9c55ab39abe4", "file_format": "rsemIndex", "display_title": "rsemIndex", "@id": "/file-formats/rsemIndex/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "37458aca-8319-4e06-9cf2-da770f1a6252", "@id": "/workflows/4DNWFBJ47YRR/", "title": "RNA-seq data processing pipeline, unstranded, 1.1", "display_title": "RNA-seq data processing pipeline, unstranded, 1.1 - 4DNWFBJ47YRR", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "ee805323-2f4d-4a03-9b74-0bcd75fb8b73", "display_title": "fastqc v1 run 2018-11-19 22:13:24.774321", "status": "released", "@id": "/workflow-runs-awsem/ee805323-2f4d-4a03-9b74-0bcd75fb8b73/", "output_files": [{"workflow_argument_name": "report_zip", "value_qc": {"@id": "/quality-metrics-fastqc/4e23fae4-015d-4f29-b9a8-1490585d0853/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHSN1UJJ/fastqc_report.html", "uuid": "4e23fae4-015d-4f29-b9a8-1490585d0853", "display_title": "QualityMetricFastqc from 2018-11-19", "overall_quality_status": "PASS", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "input_fastq", "value": {"display_title": "4DNFIHSN1UJJ.fastq.gz", "accession": "4DNFIHSN1UJJ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHSN1UJJ/", "filename": "SRR5517523_2.fastq.gz", "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "2324ad76-ff37-4157-8bcc-3ce72b7dace9", "@id": "/workflows/4DNWFAW5VTA5/", "title": "FastQC v1", "display_title": "FastQC v1 - 4DNWFAW5VTA5", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "da43af39-5376-47e4-8eee-644c67a360d7", "display_title": "md5 0.2.6 run 2018-11-19 22:13:22.049694", "status": "released", "@id": "/workflow-runs-awsem/da43af39-5376-47e4-8eee-644c67a360d7/", "output_files": [{"workflow_argument_name": "report"}], "input_files": [{"workflow_argument_name": "input_file", "value": {"display_title": "4DNFIHSN1UJJ.fastq.gz", "accession": "4DNFIHSN1UJJ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHSN1UJJ/", "filename": "SRR5517523_2.fastq.gz", "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "c77a117b-9a58-477e-aaa5-291a109a99f6", "@id": "/workflows/4DNWF2HFF82B/", "title": "md5 0.2.6", "display_title": "md5 0.2.6 - 4DNWF2HFF82B", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "fe921e60-f00c-487e-96df-f9d4160dc470", "display_title": "fastq-first-line v2 run 2020-04-08 06:00:37.841497", "status": "released", "@id": "/workflow-runs-awsem/fe921e60-f00c-487e-96df-f9d4160dc470/", "output_files": [{"workflow_argument_name": "first_line"}], "input_files": [{"workflow_argument_name": "fastq", "value": {"display_title": "4DNFIHSN1UJJ.fastq.gz", "accession": "4DNFIHSN1UJJ", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHSN1UJJ/", "filename": "SRR5517523_2.fastq.gz", "uuid": "3af2b456-d243-4311-a371-4194d016cf27", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "display_title": "fastq", "@id": "/file-formats/fastq/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"uuid": "93a1a931-d55d-4623-adfb-0fa735daf6ae", "@id": "/workflows/4DNWFASTQFO1/", "title": "Getting first line of fastq file", "display_title": "Getting first line of fastq file - 4DNWFASTQFO1", "status": "released", "@type": ["Workflow", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}