{"lab": {"status": "current", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "@id": "/labs/4dn-dcic-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "url": "https://cooler.readthedocs.io/en/latest/schema.html", "award": {"status": "current", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@type": ["Award", "Item"], "@id": "/awards/1U01CA200059-01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "assay_types": ["Hi-C"], "description": "Cooler files are another way to represent the matrix of contact frequencies generated by Hi-C data analysis and can be generated by the software package cooler. Cooler files can also be generated from hic files using the package hic2cool. Cool format is based on hdf5 and contains a sparse matrix of contact frequencies, at a single resolution. ", "file_format": "cool", "date_created": "2018-09-18T02:52:39.065352+00:00", "file_content": "contact matrix", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2022-01-18T18:28:13.798580+00:00"}, "schema_version": "1", "valid_item_types": ["FileProcessed"], "standard_file_extension": "cool", "@id": "/file-formats/cool/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-bbf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "cool", "external_references": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}