{"lab": {"status": "current", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "@id": "/labs/4dn-dcic-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"status": "current", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@type": ["Award", "Item"], "@id": "/awards/1U01CA200059-01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Methyl Hi-C", "status": "released", "other_tags": ["DNA-DNA", "Pairwise", "3D", "Methylation state"], "date_created": "2019-10-07T15:49:18.418552+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-11-14T14:49:22.751010+00:00"}, "raw_file_types": "Reads (fastq) provided by lab", "reference_pubs": [{"display_title": "Li G et al. (2019) PMID:31384045", "journal": "Nature methods", "uuid": "551c11b9-0873-4a4d-8779-c66c3a0ea5bb", "short_attribution": "Li G et al. (2019)", "@type": ["Publication", "Item"], "date_published": "2019-08-05", "status": "current", "@id": "/publications/551c11b9-0873-4a4d-8779-c66c3a0ea5bb/", "authors": ["Li G", "Liu Y", "Zhang Y", "Kubo N", "Yu M", "Fang R", "Kellis M", "Ren B"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "schema_version": "1", "static_content": [{"content": {"filetype": "txt", "content": "Methyl Hi-C is a method that combines in situ Hi-C and WGBS\n to simultaneously profile chromatin conformation and DNA methylation.\nIt begins with a standard in situ Hi-C procedure, followed by an additional \nstep of bisulfite conversion before library construction and paired-end sequencing. \nThe methylation status of cytosines and the pair-wise contact frequencies are \nthen determined.", "display_title": "Assay Description", "uuid": "f8858047-47fd-4c0e-b94b-3ebcaaca7cc8", "@type": ["StaticSection", "UserContent", "Item"], "award": {"status": "current", "@type": ["Award", "Item"], "@id": "/awards/1U01CA200059-01/", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "lab": {"status": "current", "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "@id": "/static-sections/f8858047-47fd-4c0e-b94b-3ebcaaca7cc8/", "name": "item-page-headers.ExperimentType.methylhic", "title": "Assay Description", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267227777"]}}, "location": "tab:overview"}], "experiment_name": "methyl-hi-c", "valid_item_types": ["ExperimentHiC"], "experiment_category": "Sequencing", "assay_classification": "3C via Ligation", "assay_subclass_short": "Hi-C", "assay_subclassification": "DNA-DNA Pairwise Interactions", "@id": "/experiment-types/methyl-hi-c/", "@type": ["ExperimentType", "Item"], "uuid": "033a288b-5439-4a3d-8414-725e3196f138", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Methyl Hi-C", "external_references": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}