{"lab": {"display_title": "4DN DCIC, HMS", "status": "current", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "@id": "/labs/4dn-dcic-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"status": "current", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "@type": ["Award", "Item"], "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@id": "/awards/1U01CA200059-01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Bru-seq", "status": "released", "other_tags": ["1D"], "date_created": "2019-06-03T16:11:44.012627+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-10-22T13:57:08.598258+00:00"}, "raw_file_types": "Reads (fastq) provided by lab", "reference_pubs": [{"@type": ["Publication", "Item"], "authors": ["Paulsen MT", "Veloso A", "Prasad J", "Bedi K", "Ljungman EA", "Magnuson B", "Wilson TE", "Ljungman M"], "uuid": "2bea0fc5-f67c-4f98-b3fa-2c72576a2186", "status": "current", "journal": "Methods (San Diego, Calif.)", "short_attribution": "Paulsen MT et al. (2014)", "@id": "/publications/2bea0fc5-f67c-4f98-b3fa-2c72576a2186/", "date_published": "2014-05-01", "display_title": "Paulsen MT et al. (2014) PMID:23973811", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "schema_version": "1", "static_content": [{"content": {"@id": "/static-sections/7b6f1559-ce69-4e22-967e-ffb54a6950aa/", "content": "Bru-Seq is a technique to detect spans of nascent transcription in the genome. \nNascent RNA is labeled by a pulse of Bromouridine (BrU) and specifically captured \nusing anti-BrdU antibodies. cDNA libraries are produced from the isolated Bru-RNA and sequenced.  \nSequences are aligned and analyzed to assess timing and level of transcription.", "uuid": "7b6f1559-ce69-4e22-967e-ffb54a6950aa", "name": "bruseq-expttype-desc", "lab": {"@type": ["Lab", "Item"], "status": "current", "@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "title": "Assay Description", "@type": ["StaticSection", "UserContent", "Item"], "display_title": "Assay Description", "filetype": "txt", "award": {"display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@id": "/awards/1U01CA200059-01/", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267227777"]}}, "location": "tab:overview"}], "controlled_term": {"term_name": "Bru-Seq", "uuid": "6558a42d-d0ac-4344-a093-8abce63954b4", "preferred_name": "Bru-Seq", "@id": "/ontology-terms/EFO:0008661/", "@type": ["OntologyTerm", "Item"], "term_url": "http://www.ebi.ac.uk/efo/EFO_0008661", "term_id": "EFO:0008661", "display_title": "Bru-Seq", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_name": "bru-seq", "valid_item_types": ["ExperimentSeq"], "experiment_category": "Sequencing", "assay_classification": "RNA Quantification", "assay_subclass_short": "Transcription", "assay_subclassification": "Transcription", "@id": "/experiment-types/bru-seq/", "@type": ["ExperimentType", "Item"], "uuid": "20744417-777d-4aaf-98b3-929a18a173dd", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Bru-seq", "external_references": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}