{"lab": {"correspondence": [{"contact_email": "Yi52LnN0ZWVuc2VsQG5raS5ubA==", "@id": "/users/dd8b1cd6-93cd-41e5-b184-caf1369cb39f/", "display_title": "Bas van Steensel"}], "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "title": "Bas van Steensel, NKI", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "@type": ["Lab", "Item"], "status": "current", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "award": {"center_title": "NOFIC - Belmont", "uuid": "91b694c3-f4d7-4ddd-8278-16f94e15c1c5", "description": "NOFIC: Decades of microscopy have revealed that the nucleus is not a homogeneous organelle, but rather consists of distinct compartments such as nucleoli, nuclear speckles, the nuclear lamina, among other structures. Increasing evidence indicates that specific genomic regions each associate with these compartments. This genome compartmentalization has been linked to various functions, but these links are still poorly understood. Interestingly, Lamina Associated Domains (LADs) share specific heterochromatin marks, defining chromatin domains with distinct genetic and epigenetic properties. Genomic regions associating with other nuclear compartments may similarly define distinct classes of chromatin domains. One major bottleneck towards a deeper understanding of nuclear organization has been the inability to convert microscopy views of nuclear compartments into genome-wide maps that show which loci are associated with which compartment, and how the chromosomal fiber traverses between compartments. In addition, there is an urgent need for more efficient methods to dissect the mechanisms by which large genomic regions are targeted to specific nuclear compartments. Finally, there is an urgent need for high-throughput approaches that query the functional relevance of genome compartmentalization. For this Center grant, we propose to meet these needs through the following Aims: 1. Develop a strategy that connects microscopy views to genome-wide maps that, together with modeling, reveal the localization and dynamics of genomic regions relative to all major nuclear compartments. 2. Develop methods for efficient manipulation of the genome in order to elucidate mechanisms that target loci to specific compartments. 3. Develop methods to measure, model, and validate the functional relevance of nuclear compartments. The combined results of these approaches will reveal causal relationships now hidden among entangled genomic, epigenetic, and nuclear organization features. Deliverables of this proposal include a wide range of structural and functional maps of nuclear organization, reagents for visualizing endogenous chromosome loci, a powerful pipeline for synthesis of ~100kb DNA fragments, and cell lines facilitating repeated, high-fidelity insertio of these large fragments back into selected sites in the genome. These resources will provide a powerful complement to other 4D Nucleome Consortium efforts. A key strength of this Center proposal is the experience and complementary research capabilities of its five Investigators. Together they will pool their expertise for a concerted investigation into the biological functions of nuclear compartmentalization.", "display_title": "COMBINED CYTOLOGICAL, GENOMIC, AND FUNCTIONAL MAPPING OF NUCLEAR GENOME ORGANIZATION", "status": "current", "@id": "/awards/1U54DK107965-01/", "name": "1U54DK107965-01", "project": "4DN", "@type": ["Award", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "aliases": ["vanSteensel-lab:f1219castx129T2_LmnB1"], "accession": "4DNESYPMROEJ", "condition": "LaminB1-Dam", "description": "LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq", "date_created": "2018-10-22T16:55:25.599503+00:00", "submitted_by": {"error": "no view permissions"}, "dataset_label": "DamID-seq on F121-9 cells (2018-10-22)", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-12-16T09:50:00.952572+00:00"}, "public_release": "2019-10-10", "replicate_exps": [{"bio_rep_no": 1, "tec_rep_no": 1, "replicate_exp": {"uuid": "74306354-2253-4a56-b950-4d5c5bb650d5", "display_title": "DamID-seq with DAM-Lmnb1 on F121-9-CASTx129 (Tier 2) - 4DNEXSM5KWJI", "@id": "/experiments-damid/4DNEXSM5KWJI/", "@type": ["ExperimentDamid", "Experiment", "Item"], "status": "released", "accession": "4DNEXSM5KWJI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"bio_rep_no": 2, "tec_rep_no": 1, "replicate_exp": {"uuid": "d58f8dc0-2913-4f10-a2ba-0e4e302fb702", "display_title": "DamID-seq with DAM-Lmnb1 on F121-9-CASTx129 (Tier 2) - 4DNEXKLIFH2Z", "@id": "/experiments-damid/4DNEXKLIFH2Z/", "@type": ["ExperimentDamid", "Experiment", "Item"], "status": "released", "accession": "4DNEXKLIFH2Z", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "schema_version": "2", "static_content": [{"content": {"contributing_labs": [], "title": "4DNESYPMROEJ - Processed files", "award": {"display_title": "COMBINED CYTOLOGICAL, GENOMIC, AND FUNCTIONAL MAPPING OF NUCLEAR GENOME ORGANIZATION", "status": "current", "@type": ["Award", "Item"], "@id": "/awards/1U54DK107965-01/", "uuid": "91b694c3-f4d7-4ddd-8278-16f94e15c1c5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "name": "3efb774f-12ac-4e22-bfd0-b90031b25430", "display_title": "4DNESYPMROEJ - Processed files", "filetype": "HiglassViewConfig", "uuid": "3efb774f-12ac-4e22-bfd0-b90031b25430", "lab": {"@type": ["Lab", "Item"], "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "status": "current", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "@type": ["HiglassViewConfig", "UserContent", "Item"], "description": "4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIGYZ56AD, 4DNFI8NRMRP3, 4DNFIETQFGGP, 4DNFIUJD5AYL, 4DNFIPP3AW72, 4DNFIKMRS5KD", "status": "released", "@id": "/higlass-view-configs/3efb774f-12ac-4e22-bfd0-b90031b25430/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}, "location": "tab:processed-files", "description": "auto_generated_higlass_view_config"}], "static_headers": [{"lab": {"@id": "/labs/4dn-dcic-lab/", "status": "current", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "body": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "name": "item-page-headers.ExperimentSet.data-usage-guidelines", "award": {"@id": "/awards/1U01CA200059-01/", "status": "current", "@type": ["Award", "Item"], "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Data Usage Guidelines", "status": "released", "aliases": [], "options": {"filetype": "md", "title_icon": "exclamation-circle", "collapsible": false, "default_open": true}, "date_created": "2018-08-06T03:09:55.543206+00:00", "section_type": "Item Page Header", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2022-05-09T09:31:34.537494+00:00"}, "schema_version": "2", "@id": "/static-sections/621e8359-3885-40ce-965d-91894aa7b758/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "621e8359-3885-40ce-965d-91894aa7b758", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267228139"]}, "display_title": "Data Usage Guidelines", "external_references": [], "content": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "filetype": "md", "content_as_html": "<div class=\"markdown-container\"><p><strong>Data Use Guidelines:</strong> This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n(<a href=\"https://doi.org/10.1038/nature23884\" rel=\"noopener noreferrer\" target=\"_blank\">doi:10.1038/nature23884</a>) \nand the 4DN Data Portal paper \n(<a href=\"https://doi.org/10.1038/s41467-022-29697-4\" rel=\"noopener noreferrer\" target=\"_blank\">doi:10.1038/s41467-022-29697-4</a>), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the <a href=\"mailto:support@4dnucleome.org\">Data Coordination and Integration Center</a>.</p></div>"}], "processed_files": [{"open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/66dcb98b-fad3-4bd9-94d7-952b69b02530/4DNFIGYZ56AD.bw", "uuid": "66dcb98b-fad3-4bd9-94d7-952b69b02530", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "status": "released", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIGYZ56AD.bw", "md5sum": "8f657d738e8f261c1056f242d8bcf2d8", "file_type_detailed": "normalized counts (bw)", "file_size": 4502181, "file_format": {"@id": "/file-formats/bw/", "@type": ["FileFormat", "Item"], "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "display_title": "bw", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "accession": "4DNFIGYZ56AD", "file_type": "normalized counts", "genome_assembly": "GRCm38", "href": "/files-processed/4DNFIGYZ56AD/@@download/4DNFIGYZ56AD.bw", "file_classification": "processed file", "@id": "/files-processed/4DNFIGYZ56AD/", "upload_key": "66dcb98b-fad3-4bd9-94d7-952b69b02530/4DNFIGYZ56AD.bw", "higlass_uid": "97f64a5a-7d6b-4f2f-b5e6-f3500d6d9fb7", "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"display_title": "4DNFIGYZ56AD - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@id": "/higlass-view-configs/7e89f70a-30ac-438a-a383-5a6ce68ded99/", "uuid": "7e89f70a-30ac-438a-a383-5a6ce68ded99", "@type": ["HiglassViewConfig", "UserContent", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "last_modified": {"date_modified": "2021-12-16T08:27:32.714292+00:00"}, "lab": {"display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "status": "current", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "external_references": [], "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "processed file", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/cd1f1064-9995-4ffd-85b0-c777ef6a0a82/4DNFI8NRMRP3.bed.gz", "uuid": "cd1f1064-9995-4ffd-85b0-c777ef6a0a82", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "status": "released", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFI8NRMRP3.bed.gz", "md5sum": "bdf19893e3b5e0f9d40e2965071f3095", "file_type_detailed": "LADs (bed)", "file_size": 11506, "file_format": {"@id": "/file-formats/bed/", "@type": ["FileFormat", "Item"], "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "display_title": "bed", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "accession": "4DNFI8NRMRP3", "file_type": "LADs", "genome_assembly": "GRCm38", "href": "/files-processed/4DNFI8NRMRP3/@@download/4DNFI8NRMRP3.bed.gz", "file_classification": "processed file", "@id": "/files-processed/4DNFI8NRMRP3/", "upload_key": "cd1f1064-9995-4ffd-85b0-c777ef6a0a82/4DNFI8NRMRP3.bed.gz", "higlass_uid": "TQ7BacOORw2jZnnjN8JE8w", "extra_files": [{"md5sum": "94e0d77d4f4da9b12b4e0cd5ab96cbc4", "use_for": "visualization", "href": "/files-processed/4DNFI8NRMRP3/@@download/4DNFI8NRMRP3.beddb", "file_format": {"@id": "/file-formats/beddb/", "file_format": "beddb", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "76dc8c06-67d8-487b-8fc8-d841752a0b60", "display_title": "beddb", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"display_title": "4DNFI8NRMRP3 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@id": "/higlass-view-configs/72c80486-eda1-4bfe-8f0a-6cc86a27ffd3/", "uuid": "72c80486-eda1-4bfe-8f0a-6cc86a27ffd3", "@type": ["HiglassViewConfig", "UserContent", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "last_modified": {"date_modified": "2021-12-16T08:26:28.567672+00:00"}, "lab": {"display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "status": "current", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "external_references": [], "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "processed file", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "project_release": "2019-10-10", "experiments_in_set": [{"accession": "4DNEXSM5KWJI", "files": [{"accession": "4DNFI5JCJO1W", "file_type": "reads", "file_size": 1126093288, "display_title": "4DNFI5JCJO1W.fastq.gz", "@id": "/files-fastq/4DNFI5JCJO1W/", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d51a30c7-6431-4290-9af8-4a159a2083bc/4DNFI5JCJO1W.fastq.gz", "file_type_detailed": "reads (fastq)", "@type": ["FileFastq", "File", "Item"], "status": "released", "md5sum": "a8fff1ae9723d2087319e475b53cbefd", "file_classification": "raw file", "uuid": "d51a30c7-6431-4290-9af8-4a159a2083bc", "href": "/files-fastq/4DNFI5JCJO1W/@@download/4DNFI5JCJO1W.fastq.gz", "upload_key": "d51a30c7-6431-4290-9af8-4a159a2083bc/4DNFI5JCJO1W.fastq.gz", "quality_metric": {"url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5JCJO1W/fastqc_report.html", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "status": "released", "@id": "/quality-metrics-fastqc/fe0c2ace-99e1-44ee-80a0-83ba1ca57eec/", "overall_quality_status": "PASS", "Total Sequences": 10196957, "display_title": "QualityMetricFastqc from 2018-11-06", "Sequence length": "140", "uuid": "fe0c2ace-99e1-44ee-80a0-83ba1ca57eec", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "file_format": "fastq", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bas-van-steensel-lab", "status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "raw file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "status": "released", "display_title": "DamID-seq with DAM-Lmnb1 on F121-9-CASTx129 (Tier 2) - 4DNEXSM5KWJI", "@id": "/experiments-damid/4DNEXSM5KWJI/", "uuid": "74306354-2253-4a56-b950-4d5c5bb650d5", "@type": ["ExperimentDamid", "Experiment", "Item"], "experiment_type": {"@id": "/experiment-types/damid-seq/", "assay_subclassification": "Proximity to Cellular Component", "status": "released", "assay_subclass_short": "Proximity-seq", "@type": ["ExperimentType", "Item"], "title": "DamID-seq", "display_title": "DamID-seq", "uuid": "b777a1da-8dc8-4473-9b8d-4f7716fb0a4a", "assay_classification": "Linear DNA Enrichment", "other_tags": ["1D"], "experiment_category": "Sequencing", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "biosample": {"display_title": "4DNBS2PUM1JI", "biosample_type": "stem cells", "uuid": "a28b7dad-103a-4c20-8812-2f29e056f6d4", "status": "released", "@type": ["Biosample", "Item"], "treatments_summary": "None", "@id": "/biosamples/4DNBS2PUM1JI/", "biosource_summary": "F121-9-CASTx129 (Tier 2)", "biosample_category": ["Tier 2", "Mouse stem cell"], "modifications_summary": "None", "accession": "4DNBS2PUM1JI", "biosource": [{"biosource_type": "stem cell derived cell line", "status": "released", "@id": "/biosources/4DNSRMG5APUM/", "@type": ["Biosource", "Item"], "display_title": "F121-9-CASTx129 (Tier 2) - 4DNSRMG5APUM", "cell_line_tier": "Tier 2", "accession": "4DNSRMG5APUM", "uuid": "f01caf67-dd73-40ae-9476-940f0762b9c2", "cell_line": {"uuid": "111201bc-8535-4448-903e-854af460a233", "preferred_name": "F121-9-CASTx129", "@id": "/ontology-terms/4DN:0000002/", "status": "released", "display_title": "F121-9-CASTx129", "term_id": "4DN:0000002", "term_name": "F121-9-CASTx129", "@type": ["OntologyTerm", "Item"], "slim_terms": [{"display_title": "cell line", "status": "released", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/CLO:0000031/", "uuid": "f9483d7e-4731-47d1-b8e0-1aac05ba2b49", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"@type": ["Organism", "Item"], "status": "released", "display_title": "M. musculus", "name": "mouse", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "@id": "/organisms/10090/", "scientific_name": "Mus musculus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"display_title": "stem cell", "term_name": "stem cell", "term_id": "CL:0000034", "status": "released", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "@type": ["OntologyTerm", "Item"], "preferred_name": "stem cell", "synonyms": ["animal stem cell"], "@id": "/ontology-terms/CL:0000034/", "slim_terms": [{"@id": "/ontology-terms/GO:0005623/", "status": "current", "uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/ontology-terms/CL:0000000/", "status": "released", "uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_culture_details": [{"display_title": "BiosampleCellCulture from 2018-10-22", "uuid": "91463dca-3696-45b5-aef9-a92895f447cb", "@type": ["BiosampleCellCulture", "Item"], "@id": "/biosample-cell-cultures/91463dca-3696-45b5-aef9-a92895f447cb/", "in_vitro_differentiated": "No", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "badges": [{"messages": ["Biosample receives gold status for being a 4DN Tier 1 or Tier 2 cell line that follows the approved SOP and contains all of the pertinent metadata information as required by the 4DN Samples working group."], "badge": {"description": "Gold biosample", "@type": ["Badge", "Item"], "uuid": "6c2b7409-4478-4e15-aabc-1a0df6b883e9", "badge_icon": "/static/img/badges/biosample-badge-gold-star.svg", "title": "Gold Biosample", "@id": "/badges/gold-biosample/", "display_title": "Gold Biosample", "status": "released", "commendation": "Gold Biosample", "badge_classification": "Commendation", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "other_processed_files": [{"title": "Other files - non-binned", "description": "Non-bin specific files for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFI5VI6TJD", "file_size": 2247731, "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/59a75617-7625-40dd-af80-35c9f967f2de/4DNFI5VI6TJD.html", "genome_assembly": "GRCm38", "file_type": "other", "uuid": "59a75617-7625-40dd-af80-35c9f967f2de", "status": "released", "@id": "/files-processed/4DNFI5VI6TJD/", "display_title": "4DNFI5VI6TJD.html", "@type": ["FileProcessed", "File", "Item"], "md5sum": "f40354fd4f3d1afd6fa35269acd8a4a6", "href": "/files-processed/4DNFI5VI6TJD/@@download/4DNFI5VI6TJD.html", "file_type_detailed": "other (html)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/html/", "file_format": "html", "status": "released", "uuid": "8bd6fe41-6af8-43c9-b24a-d74241898f09", "@type": ["FileFormat", "Item"], "display_title": "html", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Other files - non-binned", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2019-10-10T20:51:32.810632+00:00"}}]}, {"title": "250 kb binned files", "description": "The files associated with the 250 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFIRFESHVX", "file_size": 58769, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6e6b8bae-2e07-4426-9a2d-e20e0f6ba330/4DNFIRFESHVX.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "6e6b8bae-2e07-4426-9a2d-e20e0f6ba330", "status": "released", "@id": "/files-processed/4DNFIRFESHVX/", "display_title": "4DNFIRFESHVX.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b4e6dafa4d28637b4212c5717061c889", "href": "/files-processed/4DNFIRFESHVX/@@download/4DNFIRFESHVX.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:01.390362+00:00"}}, {"accession": "4DNFI79M4LBY", "file_size": 137955, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1b2dfdec-bd72-48cc-bef3-0ba2cb733cf2/4DNFI79M4LBY.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "1b2dfdec-bd72-48cc-bef3-0ba2cb733cf2", "status": "released", "@id": "/files-processed/4DNFI79M4LBY/", "display_title": "4DNFI79M4LBY.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "0905bf8acb62f6e9900c1876ec35335a", "href": "/files-processed/4DNFI79M4LBY/@@download/4DNFI79M4LBY.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:26.958850+00:00"}}, {"accession": "4DNFIPIRHYAY", "file_size": 134214, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fa33f52c-cb80-4f3b-89b6-a85c79ad44e0/4DNFIPIRHYAY.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "fa33f52c-cb80-4f3b-89b6-a85c79ad44e0", "status": "released", "higlass_uid": "63e6af47-1332-43a7-8878-01638457de42", "@id": "/files-processed/4DNFIPIRHYAY/", "display_title": "4DNFIPIRHYAY.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "cf29bf692c4b7257a13b237979ad2d46", "href": "/files-processed/4DNFIPIRHYAY/@@download/4DNFIPIRHYAY.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "8a7e3be6-e247-4b2c-96e1-ceb57c093352", "display_title": "4DNFIPIRHYAY - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/8a7e3be6-e247-4b2c-96e1-ceb57c093352/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:47.536640+00:00"}}, {"accession": "4DNFIJSCQSFN", "file_size": 195199, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/27a6c4d1-dc9f-4070-ae85-b6c85cbe67cf/4DNFIJSCQSFN.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "27a6c4d1-dc9f-4070-ae85-b6c85cbe67cf", "status": "released", "higlass_uid": "2ca32808-01d6-4260-9ba4-2f57f18fd258", "@id": "/files-processed/4DNFIJSCQSFN/", "display_title": "4DNFIJSCQSFN.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "f3a0795c9e598682c9c61472d810a215", "href": "/files-processed/4DNFIJSCQSFN/@@download/4DNFIJSCQSFN.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "2e1184a4-28e0-487c-a7c1-96fb551f208c", "display_title": "4DNFIJSCQSFN - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/2e1184a4-28e0-487c-a7c1-96fb551f208c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:12.117465+00:00"}}, {"accession": "4DNFIUSWNJA2", "file_size": 40621, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/50502294-8eef-49c7-8362-b959cb801009/4DNFIUSWNJA2.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "50502294-8eef-49c7-8362-b959cb801009", "status": "released", "@id": "/files-processed/4DNFIUSWNJA2/", "display_title": "4DNFIUSWNJA2.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b59c645ea629400c7c10d3ffbb987b66", "href": "/files-processed/4DNFIUSWNJA2/@@download/4DNFIUSWNJA2.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:40.551196+00:00"}}, {"accession": "4DNFIOWLFXLJ", "file_size": 2055, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/35e6a9c7-ec4a-431c-b338-2df7958ab21e/4DNFIOWLFXLJ.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "35e6a9c7-ec4a-431c-b338-2df7958ab21e", "status": "released", "higlass_uid": "H7Nfb2YMQEOr5TafNxOuRQ", "@id": "/files-processed/4DNFIOWLFXLJ/", "display_title": "4DNFIOWLFXLJ.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "34e3c273ee7e8131f9f1ba2d9db1ffb4", "href": "/files-processed/4DNFIOWLFXLJ/@@download/4DNFIOWLFXLJ.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "09db61a6-3249-4576-8f21-0538761b95fa", "display_title": "4DNFIOWLFXLJ - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/09db61a6-3249-4576-8f21-0538761b95fa/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:06.763482+00:00"}}]}, {"title": "100 kb binned files", "description": "The files associated with the 100 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFIYRB8QBG", "file_size": 155187, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fb783a16-a31b-420f-abc2-2d524ff346d5/4DNFIYRB8QBG.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "fb783a16-a31b-420f-abc2-2d524ff346d5", "status": "released", "@id": "/files-processed/4DNFIYRB8QBG/", "display_title": "4DNFIYRB8QBG.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "07c0510fbad0baae664203a010fc5c62", "href": "/files-processed/4DNFIYRB8QBG/@@download/4DNFIYRB8QBG.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:04.841086+00:00"}}, {"accession": "4DNFI95LMJMM", "file_size": 358269, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e6cfc245-8890-4bd0-b056-10415a096ede/4DNFI95LMJMM.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "e6cfc245-8890-4bd0-b056-10415a096ede", "status": "released", "@id": "/files-processed/4DNFI95LMJMM/", "display_title": "4DNFI95LMJMM.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4992c7802a9579b2836ae4b71798ab57", "href": "/files-processed/4DNFI95LMJMM/@@download/4DNFI95LMJMM.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:30.127809+00:00"}}, {"accession": "4DNFI5SRBZUX", "file_size": 272060, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/c78ea8f0-857c-414f-be8f-4154e4d8433a/4DNFI5SRBZUX.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "c78ea8f0-857c-414f-be8f-4154e4d8433a", "status": "released", "higlass_uid": "f4dc283d-12be-4d85-8f65-4702075700d2", "@id": "/files-processed/4DNFI5SRBZUX/", "display_title": "4DNFI5SRBZUX.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "3ea18b9966c154cf2a03329fd671dd58", "href": "/files-processed/4DNFI5SRBZUX/@@download/4DNFI5SRBZUX.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "09accd78-e68b-45d5-be5f-b2ab57210328", "display_title": "4DNFI5SRBZUX - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/09accd78-e68b-45d5-be5f-b2ab57210328/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:50.907851+00:00"}}, {"accession": "4DNFIN71QXGB", "file_size": 435013, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e7b2b78f-9745-432c-8e1a-26851290609c/4DNFIN71QXGB.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "e7b2b78f-9745-432c-8e1a-26851290609c", "status": "released", "higlass_uid": "15666e84-2f88-4d0e-8a5a-0efdfa683ebb", "@id": "/files-processed/4DNFIN71QXGB/", "display_title": "4DNFIN71QXGB.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "90feeecc8c20e96c80be10c52a5fc9e5", "href": "/files-processed/4DNFIN71QXGB/@@download/4DNFIN71QXGB.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "ddcf2016-0e6c-45c4-8a5c-7260422cec3d", "display_title": "4DNFIN71QXGB - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/ddcf2016-0e6c-45c4-8a5c-7260422cec3d/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:15.081394+00:00"}}, {"accession": "4DNFIHIZ3PUH", "file_size": 112862, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/13d14d07-ab56-4fc9-9f4c-7e9048783432/4DNFIHIZ3PUH.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "13d14d07-ab56-4fc9-9f4c-7e9048783432", "status": "released", "@id": "/files-processed/4DNFIHIZ3PUH/", "display_title": "4DNFIHIZ3PUH.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b5aefae9a1a72a44f2b664740a4fb217", "href": "/files-processed/4DNFIHIZ3PUH/@@download/4DNFIHIZ3PUH.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:43.936450+00:00"}}, {"accession": "4DNFIZYC8EGV", "file_size": 3183, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/05398d67-78dd-409e-87ab-429a4df122f5/4DNFIZYC8EGV.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "05398d67-78dd-409e-87ab-429a4df122f5", "status": "released", "higlass_uid": "Bkoy5008SsSVx8wKsNAFag", "@id": "/files-processed/4DNFIZYC8EGV/", "display_title": "4DNFIZYC8EGV.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4af1222c9bdfac4880cbf39bf4c81933", "href": "/files-processed/4DNFIZYC8EGV/@@download/4DNFIZYC8EGV.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "bf949f07-4536-4473-9496-63f9ed4027d7", "display_title": "4DNFIZYC8EGV - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/bf949f07-4536-4473-9496-63f9ed4027d7/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:10.395211+00:00"}}]}, {"title": "80 kb binned files", "description": "The files associated with the 80 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFINMJTLKW", "file_size": 196068, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bdf3e792-b6d1-4632-a3e5-88abccdf64f1/4DNFINMJTLKW.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "bdf3e792-b6d1-4632-a3e5-88abccdf64f1", "status": "released", "@id": "/files-processed/4DNFINMJTLKW/", "display_title": "4DNFINMJTLKW.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b74cb09bf87c832cfb8ebeee73be5f4e", "href": "/files-processed/4DNFINMJTLKW/@@download/4DNFINMJTLKW.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:08.547817+00:00"}}, {"accession": "4DNFI32KFGBG", "file_size": 451441, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/62662c25-e6a3-4507-a2ca-82701f322550/4DNFI32KFGBG.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "62662c25-e6a3-4507-a2ca-82701f322550", "status": "released", "@id": "/files-processed/4DNFI32KFGBG/", "display_title": "4DNFI32KFGBG.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4412a0a5cc3af74666ddb660d8fd965c", "href": "/files-processed/4DNFI32KFGBG/@@download/4DNFI32KFGBG.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:33.495029+00:00"}}, {"accession": "4DNFI6FXW2DF", "file_size": 318687, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6ed8ea65-4912-4cea-adca-b76bea47feb7/4DNFI6FXW2DF.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "6ed8ea65-4912-4cea-adca-b76bea47feb7", "status": "released", "higlass_uid": "537197a9-4d70-4248-878d-ad5f7a6192e3", "@id": "/files-processed/4DNFI6FXW2DF/", "display_title": "4DNFI6FXW2DF.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "288716674a7c3697cd3b3e0bff94f8cc", "href": "/files-processed/4DNFI6FXW2DF/@@download/4DNFI6FXW2DF.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "c34d95c7-cd4d-4fb8-acec-0720afa6c5d4", "display_title": "4DNFI6FXW2DF - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/c34d95c7-cd4d-4fb8-acec-0720afa6c5d4/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:54.338322+00:00"}}, {"accession": "4DNFILIF649Q", "file_size": 530275, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/9f7e502d-d7d4-4514-801c-a1ae83c9e3ef/4DNFILIF649Q.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "9f7e502d-d7d4-4514-801c-a1ae83c9e3ef", "status": "released", "higlass_uid": "82abbf1a-07a6-4c46-b70c-3cfb9afa3d3b", "@id": "/files-processed/4DNFILIF649Q/", "display_title": "4DNFILIF649Q.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ad319bc6c4ca3f3b2219a4dd9e51242f", "href": "/files-processed/4DNFILIF649Q/@@download/4DNFILIF649Q.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "745099ab-60a4-4546-8674-1e01879dda8c", "display_title": "4DNFILIF649Q - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/745099ab-60a4-4546-8674-1e01879dda8c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:18.344025+00:00"}}, {"accession": "4DNFI8O3JEW8", "file_size": 143549, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4f253559-2875-4011-a91f-a309d4f5b682/4DNFI8O3JEW8.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "4f253559-2875-4011-a91f-a309d4f5b682", "status": "released", "@id": "/files-processed/4DNFI8O3JEW8/", "display_title": "4DNFI8O3JEW8.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1aacf55137c4587eb24fbab82f0b5ccb", "href": "/files-processed/4DNFI8O3JEW8/@@download/4DNFI8O3JEW8.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:47.136125+00:00"}}, {"accession": "4DNFITVKOEPU", "file_size": 3688, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6087394f-088e-4ce0-98c3-53d1b429c2f9/4DNFITVKOEPU.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "6087394f-088e-4ce0-98c3-53d1b429c2f9", "status": "released", "higlass_uid": "A-G8UzjLQ2u2G7m0fRoozw", "@id": "/files-processed/4DNFITVKOEPU/", "display_title": "4DNFITVKOEPU.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "6dbf1154314c9c3ca07dc017d9aaadb7", "href": "/files-processed/4DNFITVKOEPU/@@download/4DNFITVKOEPU.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "491c928b-cf7d-41d8-ac75-61a6dd321dbd", "display_title": "4DNFITVKOEPU - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/491c928b-cf7d-41d8-ac75-61a6dd321dbd/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:13.868120+00:00"}}]}, {"title": "50 kb binned files", "description": "The files associated with the 50 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFILLSRUEC", "file_size": 306342, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a9accc26-afc7-4afc-8f9c-9e53612917e7/4DNFILLSRUEC.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "a9accc26-afc7-4afc-8f9c-9e53612917e7", "status": "released", "@id": "/files-processed/4DNFILLSRUEC/", "display_title": "4DNFILLSRUEC.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "8a05e37aa5363f5b5df885ad1a5c32ac", "href": "/files-processed/4DNFILLSRUEC/@@download/4DNFILLSRUEC.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:12.592691+00:00"}}, {"accession": "4DNFIYGR432B", "file_size": 709709, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/5b3398e8-9e7d-4854-9f63-eca7f140b466/4DNFIYGR432B.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "5b3398e8-9e7d-4854-9f63-eca7f140b466", "status": "released", "@id": "/files-processed/4DNFIYGR432B/", "display_title": "4DNFIYGR432B.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ce162d542f156cc2b2e4f0254cb135c8", "href": "/files-processed/4DNFIYGR432B/@@download/4DNFIYGR432B.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:36.777824+00:00"}}, {"accession": "4DNFI5TICHD3", "file_size": 478717, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a5dd0598-c0eb-43ac-8c6a-173ac01fafd7/4DNFI5TICHD3.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "a5dd0598-c0eb-43ac-8c6a-173ac01fafd7", "status": "released", "higlass_uid": "96e1f291-b46f-4963-bbf1-41319e8e4175", "@id": "/files-processed/4DNFI5TICHD3/", "display_title": "4DNFI5TICHD3.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ab4fe9c25aff7afc1d3a2c16ab22124a", "href": "/files-processed/4DNFI5TICHD3/@@download/4DNFI5TICHD3.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "4346ad1c-65d4-4fdd-a15c-e91f61cb6d00", "display_title": "4DNFI5TICHD3 - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/4346ad1c-65d4-4fdd-a15c-e91f61cb6d00/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:57.693307+00:00"}}, {"accession": "4DNFINRSNOUY", "file_size": 827059, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/533eacc3-4c71-45f7-a1df-3d7dffb57781/4DNFINRSNOUY.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "533eacc3-4c71-45f7-a1df-3d7dffb57781", "status": "released", "higlass_uid": "bbac069c-265c-48f6-ad50-e17abdfc2e1c", "@id": "/files-processed/4DNFINRSNOUY/", "display_title": "4DNFINRSNOUY.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "febeb8a8f07184aec4a9c9cb83c60ce6", "href": "/files-processed/4DNFINRSNOUY/@@download/4DNFINRSNOUY.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "9ed9f3f3-b72d-41e2-b522-1d10be2739a3", "display_title": "4DNFINRSNOUY - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/9ed9f3f3-b72d-41e2-b522-1d10be2739a3/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:21.923835+00:00"}}, {"accession": "4DNFISGHSECS", "file_size": 221878, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/305ee9e1-7873-449c-82df-c441c1438135/4DNFISGHSECS.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "305ee9e1-7873-449c-82df-c441c1438135", "status": "released", "@id": "/files-processed/4DNFISGHSECS/", "display_title": "4DNFISGHSECS.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "fd0f8a76f1057da570dc05a8ff63be9d", "href": "/files-processed/4DNFISGHSECS/@@download/4DNFISGHSECS.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:50.552324+00:00"}}, {"accession": "4DNFI6K4B846", "file_size": 4306, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a2bfaa25-03ef-4105-92aa-891bcfb94113/4DNFI6K4B846.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "a2bfaa25-03ef-4105-92aa-891bcfb94113", "status": "released", "higlass_uid": "TA9PPI8GTCSiBpwRPNPh6Q", "@id": "/files-processed/4DNFI6K4B846/", "display_title": "4DNFI6K4B846.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "79a4fcf386f494e1c7caa159f60f4d3c", "href": "/files-processed/4DNFI6K4B846/@@download/4DNFI6K4B846.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "b43eeefe-c5d8-43bb-9e2b-851071d704b7", "display_title": "4DNFI6K4B846 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/b43eeefe-c5d8-43bb-9e2b-851071d704b7/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:17.056810+00:00"}}]}, {"title": "25 kb binned files", "description": "The files associated with the 25 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFIZRHLO8J", "file_size": 607431, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4f38daee-2de1-4481-b8f0-6f176454c474/4DNFIZRHLO8J.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "4f38daee-2de1-4481-b8f0-6f176454c474", "status": "released", "@id": "/files-processed/4DNFIZRHLO8J/", "display_title": "4DNFIZRHLO8J.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "8a66ea7e5945118c42139dbc56022b52", "href": "/files-processed/4DNFIZRHLO8J/@@download/4DNFIZRHLO8J.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:15.988286+00:00"}}, {"accession": "4DNFIYOX7FK1", "file_size": 1400560, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/22402e10-39ea-4750-a9eb-7428d0c58726/4DNFIYOX7FK1.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "22402e10-39ea-4750-a9eb-7428d0c58726", "status": "released", "@id": "/files-processed/4DNFIYOX7FK1/", "display_title": "4DNFIYOX7FK1.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2d3ab70fb367f796ac221d03a64f1d0f", "href": "/files-processed/4DNFIYOX7FK1/@@download/4DNFIYOX7FK1.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:39.714328+00:00"}}, {"accession": "4DNFITGSI36P", "file_size": 880073, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/057c4661-1a79-47a5-8950-826e0f9e9c48/4DNFITGSI36P.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "057c4661-1a79-47a5-8950-826e0f9e9c48", "status": "released", "higlass_uid": "b7f47dc7-08b9-4f93-a97c-419fa7e6ef7d", "@id": "/files-processed/4DNFITGSI36P/", "display_title": "4DNFITGSI36P.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "eb4055b773151cc7f333614b41d1841c", "href": "/files-processed/4DNFITGSI36P/@@download/4DNFITGSI36P.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "fe4793cb-a6b2-44ab-8f89-bc16258ccc34", "display_title": "4DNFITGSI36P - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/fe4793cb-a6b2-44ab-8f89-bc16258ccc34/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:02.137384+00:00"}}, {"accession": "4DNFIM9F3C5F", "file_size": 1607707, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/12455854-dc5d-4f83-ba3d-30838c3a05e9/4DNFIM9F3C5F.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "12455854-dc5d-4f83-ba3d-30838c3a05e9", "status": "released", "higlass_uid": "b9f7a887-162f-421a-9040-4ebb997bb5fa", "@id": "/files-processed/4DNFIM9F3C5F/", "display_title": "4DNFIM9F3C5F.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "a5f740c8e0104f7c53b1ec0b23f958e4", "href": "/files-processed/4DNFIM9F3C5F/@@download/4DNFIM9F3C5F.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "1a3d3521-8d8e-4151-9a73-31179829e7e9", "display_title": "4DNFIM9F3C5F - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/1a3d3521-8d8e-4151-9a73-31179829e7e9/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:25.515939+00:00"}}, {"accession": "4DNFIJIW3QI5", "file_size": 455981, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8105f1be-820a-4f6b-bd11-51a8a1346f99/4DNFIJIW3QI5.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "8105f1be-820a-4f6b-bd11-51a8a1346f99", "status": "released", "@id": "/files-processed/4DNFIJIW3QI5/", "display_title": "4DNFIJIW3QI5.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "da07b026efd26caaa5ab76a8c2880234", "href": "/files-processed/4DNFIJIW3QI5/@@download/4DNFIJIW3QI5.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:53.760395+00:00"}}, {"accession": "4DNFIJLVWT72", "file_size": 5755, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/5b0fd694-d5e3-4246-9466-d14c4a8c83f8/4DNFIJLVWT72.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "5b0fd694-d5e3-4246-9466-d14c4a8c83f8", "status": "released", "higlass_uid": "eDX0BeyDRBGvtV5S4h6MNQ", "@id": "/files-processed/4DNFIJLVWT72/", "display_title": "4DNFIJLVWT72.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "72d5923aab71c1711d6a153db87496a7", "href": "/files-processed/4DNFIJLVWT72/@@download/4DNFIJLVWT72.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "59753b1c-ddd2-4ee0-b04c-ec33baa1cc05", "display_title": "4DNFIJLVWT72 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/59753b1c-ddd2-4ee0-b04c-ec33baa1cc05/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:20.523739+00:00"}}]}, {"title": "20 kb binned files", "description": "The files associated with the 20 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFIOMU2YMH", "file_size": 755974, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e3603856-efd0-4395-accf-872f35c56583/4DNFIOMU2YMH.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "e3603856-efd0-4395-accf-872f35c56583", "status": "released", "@id": "/files-processed/4DNFIOMU2YMH/", "display_title": "4DNFIOMU2YMH.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1d8474dbb7c2ab8e464c46192a1b8986", "href": "/files-processed/4DNFIOMU2YMH/@@download/4DNFIOMU2YMH.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:19.608751+00:00"}}, {"accession": "4DNFIEM4IT3N", "file_size": 1730225, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/34d94280-b3b7-46aa-92e8-4cf6d94d5c62/4DNFIEM4IT3N.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "34d94280-b3b7-46aa-92e8-4cf6d94d5c62", "status": "released", "@id": "/files-processed/4DNFIEM4IT3N/", "display_title": "4DNFIEM4IT3N.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1464bd39c040f5d256ff310ac654c2b9", "href": "/files-processed/4DNFIEM4IT3N/@@download/4DNFIEM4IT3N.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:42.616180+00:00"}}, {"accession": "4DNFIP99O6BQ", "file_size": 1052770, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e774e88e-8c78-4881-9b5f-0287c29dc096/4DNFIP99O6BQ.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "e774e88e-8c78-4881-9b5f-0287c29dc096", "status": "released", "higlass_uid": "b377dbbc-4980-44e6-9d4b-1e6a7d62d64e", "@id": "/files-processed/4DNFIP99O6BQ/", "display_title": "4DNFIP99O6BQ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2ae2791987ee1cfceb5d23452a4d0e9d", "href": "/files-processed/4DNFIP99O6BQ/@@download/4DNFIP99O6BQ.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "df9ead85-34ac-4822-806b-4e3dddbb9358", "display_title": "4DNFIP99O6BQ - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/df9ead85-34ac-4822-806b-4e3dddbb9358/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:05.664401+00:00"}}, {"accession": "4DNFI5FSD7CL", "file_size": 1278297, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/9d125e44-45f9-44db-8f65-1504e9943658/4DNFI5FSD7CL.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "9d125e44-45f9-44db-8f65-1504e9943658", "status": "released", "higlass_uid": "e0805b14-cc0a-4383-b7d5-e8ac81b4fa76", "@id": "/files-processed/4DNFI5FSD7CL/", "display_title": "4DNFI5FSD7CL.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "d0ef33ac800258c7cf7d871dfb5e406c", "href": "/files-processed/4DNFI5FSD7CL/@@download/4DNFI5FSD7CL.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "8ea61dc0-9fee-4fa8-8d55-3dde2681c025", "display_title": "4DNFI5FSD7CL - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/8ea61dc0-9fee-4fa8-8d55-3dde2681c025/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:28.726906+00:00"}}, {"accession": "4DNFIK7JSPPM", "file_size": 572404, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1b4db667-74f6-4cc5-a09b-9db51cee1726/4DNFIK7JSPPM.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "1b4db667-74f6-4cc5-a09b-9db51cee1726", "status": "released", "@id": "/files-processed/4DNFIK7JSPPM/", "display_title": "4DNFIK7JSPPM.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "788674479e3bdcd53722715b8a388b49", "href": "/files-processed/4DNFIK7JSPPM/@@download/4DNFIK7JSPPM.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:56.800333+00:00"}}, {"accession": "4DNFI7RB51NA", "file_size": 6427, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d0c832f2-620f-44df-a03c-a822a9c58316/4DNFI7RB51NA.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "d0c832f2-620f-44df-a03c-a822a9c58316", "status": "released", "higlass_uid": "dzPOgHiWR7u9bPkpVEsimQ", "@id": "/files-processed/4DNFI7RB51NA/", "display_title": "4DNFI7RB51NA.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "67acfcb876d1bb4a8534fe971e206cb8", "href": "/files-processed/4DNFI7RB51NA/@@download/4DNFI7RB51NA.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "57ae047b-6556-4073-a69b-8c21346921fc", "display_title": "4DNFI7RB51NA - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/57ae047b-6556-4073-a69b-8c21346921fc/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:23.904152+00:00"}}]}, {"title": "10 kb binned files", "description": "The files associated with the 10 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFI2BADMGK", "file_size": 1507175, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d5f78d56-ba93-4efe-88b0-7e33621315fc/4DNFI2BADMGK.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "d5f78d56-ba93-4efe-88b0-7e33621315fc", "status": "released", "@id": "/files-processed/4DNFI2BADMGK/", "display_title": "4DNFI2BADMGK.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "3588e5269d424e33598383c34b39ef9c", "href": "/files-processed/4DNFI2BADMGK/@@download/4DNFI2BADMGK.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:23.067708+00:00"}}, {"accession": "4DNFI7VU9K19", "file_size": 3122102, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/722d2e4a-6945-4862-91a9-b65bd0374e21/4DNFI7VU9K19.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "722d2e4a-6945-4862-91a9-b65bd0374e21", "status": "released", "@id": "/files-processed/4DNFI7VU9K19/", "display_title": "4DNFI7VU9K19.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "88715372242e9fc35bc57c9e82bfdcae", "href": "/files-processed/4DNFI7VU9K19/@@download/4DNFI7VU9K19.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:45.450019+00:00"}}, {"accession": "4DNFI7QGRS5I", "file_size": 1989079, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/abd2e46d-2b5f-48a7-9c46-3fd0bafbd8ed/4DNFI7QGRS5I.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "abd2e46d-2b5f-48a7-9c46-3fd0bafbd8ed", "status": "released", "higlass_uid": "c75fbcad-dd41-44a9-9c30-4664f602fe48", "@id": "/files-processed/4DNFI7QGRS5I/", "display_title": "4DNFI7QGRS5I.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2f72b5f8ea175616e56ed29873b337f3", "href": "/files-processed/4DNFI7QGRS5I/@@download/4DNFI7QGRS5I.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "0a1077fe-5f73-4024-a72e-2b4df8aeefd5", "display_title": "4DNFI7QGRS5I - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/0a1077fe-5f73-4024-a72e-2b4df8aeefd5/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:09.289022+00:00"}}, {"accession": "4DNFI1NX3EK7", "file_size": 2379444, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e2fee16e-a79d-4ad8-9726-43ae7d59e138/4DNFI1NX3EK7.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "e2fee16e-a79d-4ad8-9726-43ae7d59e138", "status": "released", "higlass_uid": "17102ed1-3705-4c5e-99d4-ad6d89d4d54c", "@id": "/files-processed/4DNFI1NX3EK7/", "display_title": "4DNFI1NX3EK7.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "0b812d62d3455ee27102a689d80dc364", "href": "/files-processed/4DNFI1NX3EK7/@@download/4DNFI1NX3EK7.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "cb634c74-0b80-460c-bb65-1e26ae2fbbdc", "display_title": "4DNFI1NX3EK7 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/cb634c74-0b80-460c-bb65-1e26ae2fbbdc/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:31.756131+00:00"}}, {"accession": "4DNFIXXYWBBP", "file_size": 1202987, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e58a6f04-668f-4453-8b44-fcb617431db1/4DNFIXXYWBBP.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "e58a6f04-668f-4453-8b44-fcb617431db1", "status": "released", "@id": "/files-processed/4DNFIXXYWBBP/", "display_title": "4DNFIXXYWBBP.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "af5d342aaaf8832b512718351c5cd721", "href": "/files-processed/4DNFIXXYWBBP/@@download/4DNFIXXYWBBP.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:59.904555+00:00"}}, {"accession": "4DNFI2ZDPLZA", "file_size": 11171, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8a9ef766-8501-4b96-adc5-11408675e514/4DNFI2ZDPLZA.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "8a9ef766-8501-4b96-adc5-11408675e514", "status": "released", "higlass_uid": "EoWvg3YXTqakD789OySGXg", "@id": "/files-processed/4DNFI2ZDPLZA/", "display_title": "4DNFI2ZDPLZA.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "7bcdb776dac5db15d15953c956a54cf1", "href": "/files-processed/4DNFI2ZDPLZA/@@download/4DNFI2ZDPLZA.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "c5d5a042-6562-441e-999f-6451526da1ff", "display_title": "4DNFI2ZDPLZA - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/c5d5a042-6562-441e-999f-6451526da1ff/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:27.478325+00:00"}}]}, {"title": "Additional 5 kb binned files", "description": "Additional files associated with the 5 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFI6HM473T", "file_size": 2891808, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/985dcbc2-7fcf-4c08-ad67-c4eff29cc322/4DNFI6HM473T.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "985dcbc2-7fcf-4c08-ad67-c4eff29cc322", "status": "released", "@id": "/files-processed/4DNFI6HM473T/", "display_title": "4DNFI6HM473T.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "daf5b6505ea7188df0ec281d0f46d6d7", "href": "/files-processed/4DNFI6HM473T/@@download/4DNFI6HM473T.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:26.442827+00:00"}}, {"accession": "4DNFIHG2GDUH", "file_size": 5009239, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/546a694b-3b6d-4288-881e-a4bbc6b9a7a8/4DNFIHG2GDUH.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "546a694b-3b6d-4288-881e-a4bbc6b9a7a8", "status": "released", "@id": "/files-processed/4DNFIHG2GDUH/", "display_title": "4DNFIHG2GDUH.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "dd8456269b59502fec74f9886887e894", "href": "/files-processed/4DNFIHG2GDUH/@@download/4DNFIHG2GDUH.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:48.769649+00:00"}}, {"accession": "4DNFIUYWH82U", "file_size": 3692902, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a8f7dc35-9898-4bad-a2f6-1d045feb13c2/4DNFIUYWH82U.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "a8f7dc35-9898-4bad-a2f6-1d045feb13c2", "status": "released", "higlass_uid": "75bb8bf1-c0fb-4f5d-9c68-323ba809f0f3", "@id": "/files-processed/4DNFIUYWH82U/", "display_title": "4DNFIUYWH82U.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1ac5b6f0b9adcc0c9f1c1d6fd7fffe5e", "href": "/files-processed/4DNFIUYWH82U/@@download/4DNFIUYWH82U.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "d675c1c5-1cd7-469b-9759-a8571509b93f", "display_title": "4DNFIUYWH82U - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/d675c1c5-1cd7-469b-9759-a8571509b93f/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:13.145130+00:00"}}, {"accession": "4DNFI6EHMG5J", "file_size": 2459862, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f584fed5-e2ab-418b-8c67-f3a7c32c2ed8/4DNFI6EHMG5J.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "f584fed5-e2ab-418b-8c67-f3a7c32c2ed8", "status": "released", "@id": "/files-processed/4DNFI6EHMG5J/", "display_title": "4DNFI6EHMG5J.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "039f22d724bd91da0f59945dcf5bbf73", "href": "/files-processed/4DNFI6EHMG5J/@@download/4DNFI6EHMG5J.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:27:03.200500+00:00"}}]}, {"title": "2 kb binned files", "description": "The files associated with the 2 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFICGQCXP1", "file_size": 6998537, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1b1146b0-933f-4f7a-ba24-ff95af17a35d/4DNFICGQCXP1.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "1b1146b0-933f-4f7a-ba24-ff95af17a35d", "status": "released", "@id": "/files-processed/4DNFICGQCXP1/", "display_title": "4DNFICGQCXP1.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c0077e94aea35ae321f22f89a7fa621f", "href": "/files-processed/4DNFICGQCXP1/@@download/4DNFICGQCXP1.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:29.982550+00:00"}}, {"accession": "4DNFI663M8A5", "file_size": 9459483, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/9bdc3205-aafd-4420-ac17-fcec5dbe44bc/4DNFI663M8A5.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "9bdc3205-aafd-4420-ac17-fcec5dbe44bc", "status": "released", "@id": "/files-processed/4DNFI663M8A5/", "display_title": "4DNFI663M8A5.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b2c8f848ede7fc20b1a6176ce5c4ac3e", "href": "/files-processed/4DNFI663M8A5/@@download/4DNFI663M8A5.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:51.729077+00:00"}}, {"accession": "4DNFIQ5JMDB9", "file_size": 8196622, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/28b0b2aa-0fba-488f-bbf7-ea98405c5fff/4DNFIQ5JMDB9.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "28b0b2aa-0fba-488f-bbf7-ea98405c5fff", "status": "released", "higlass_uid": "c148ac23-664c-4ee7-821b-6dc78f8c0230", "@id": "/files-processed/4DNFIQ5JMDB9/", "display_title": "4DNFIQ5JMDB9.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "3348af57cae4d5d7f640f9c01701364b", "href": "/files-processed/4DNFIQ5JMDB9/@@download/4DNFIQ5JMDB9.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "3249bf82-6927-4e73-848a-088339145d71", "display_title": "4DNFIQ5JMDB9 - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/3249bf82-6927-4e73-848a-088339145d71/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:16.920160+00:00"}}, {"accession": "4DNFISEURLIE", "file_size": 6166774, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/30ca1f78-18c5-4312-b7c7-e3305d70ba7c/4DNFISEURLIE.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "30ca1f78-18c5-4312-b7c7-e3305d70ba7c", "status": "released", "higlass_uid": "7f4dffab-3022-46b2-a870-c33d5494ec11", "@id": "/files-processed/4DNFISEURLIE/", "display_title": "4DNFISEURLIE.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4a203054db6b63e610c14e7bb53cb796", "href": "/files-processed/4DNFISEURLIE/@@download/4DNFISEURLIE.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "29e2aa7a-d386-4943-bdc1-e26100d60c69", "display_title": "4DNFISEURLIE - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/29e2aa7a-d386-4943-bdc1-e26100d60c69/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:38.069024+00:00"}}, {"accession": "4DNFICVOHG2E", "file_size": 6246163, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d6de7114-5c9b-4c9b-a111-8f4fc69b7252/4DNFICVOHG2E.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "d6de7114-5c9b-4c9b-a111-8f4fc69b7252", "status": "released", "@id": "/files-processed/4DNFICVOHG2E/", "display_title": "4DNFICVOHG2E.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "f1c05f9316cc683cdac79a05595579ae", "href": "/files-processed/4DNFICVOHG2E/@@download/4DNFICVOHG2E.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:27:06.125761+00:00"}}, {"accession": "4DNFI5AG3FF5", "file_size": 6883, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/0d9bf463-cd8c-4dd8-a531-0c8562772d9a/4DNFI5AG3FF5.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "0d9bf463-cd8c-4dd8-a531-0c8562772d9a", "status": "released", "higlass_uid": "Ts1LypJcS-yy23GoAT3NDQ", "@id": "/files-processed/4DNFI5AG3FF5/", "display_title": "4DNFI5AG3FF5.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "a17e2e7ba546ed95da7d14c022cf5fbe", "href": "/files-processed/4DNFI5AG3FF5/@@download/4DNFI5AG3FF5.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "47ac4d6c-6179-45b2-9dfc-e569adf71943", "display_title": "4DNFI5AG3FF5 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/47ac4d6c-6179-45b2-9dfc-e569adf71943/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:34.347219+00:00"}}]}, {"title": "1 kb binned files", "description": "The files associated with the 1 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFIHD277YB", "file_size": 13767543, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/74089320-54b0-4411-8da7-12a9901ca586/4DNFIHD277YB.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "74089320-54b0-4411-8da7-12a9901ca586", "status": "released", "@id": "/files-processed/4DNFIHD277YB/", "display_title": "4DNFIHD277YB.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "32440df3e878aa6548db570b349b7a50", "href": "/files-processed/4DNFIHD277YB/@@download/4DNFIHD277YB.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:33.320642+00:00"}}, {"accession": "4DNFI4CSJGH7", "file_size": 15897262, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/b67a5dfb-bf36-4250-842b-b5306563b57d/4DNFI4CSJGH7.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "b67a5dfb-bf36-4250-842b-b5306563b57d", "status": "released", "@id": "/files-processed/4DNFI4CSJGH7/", "display_title": "4DNFI4CSJGH7.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "eba0cd48a4150317e1fe65bd92b3db3f", "href": "/files-processed/4DNFI4CSJGH7/@@download/4DNFI4CSJGH7.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:54.812167+00:00"}}, {"accession": "4DNFI7JQ27OF", "file_size": 15500347, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/32d9210c-0cae-486b-8d85-76e77d1217b2/4DNFI7JQ27OF.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "32d9210c-0cae-486b-8d85-76e77d1217b2", "status": "released", "higlass_uid": "1c197f4b-0a0d-4a4b-8f2c-2783d5bcda4f", "@id": "/files-processed/4DNFI7JQ27OF/", "display_title": "4DNFI7JQ27OF.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "e9df32861857a72d9961382dbba1ac35", "href": "/files-processed/4DNFI7JQ27OF/@@download/4DNFI7JQ27OF.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "15e2ef25-843d-4918-98b9-d415eb7121c9", "display_title": "4DNFI7JQ27OF - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/15e2ef25-843d-4918-98b9-d415eb7121c9/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:20.251743+00:00"}}, {"accession": "4DNFIJI2UQ1B", "file_size": 8024509, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fa26fb31-726e-45f7-8562-427094bc013c/4DNFIJI2UQ1B.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "fa26fb31-726e-45f7-8562-427094bc013c", "status": "released", "higlass_uid": "16232ec4-1246-440a-9179-7b159654bc93", "@id": "/files-processed/4DNFIJI2UQ1B/", "display_title": "4DNFIJI2UQ1B.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "62d6984f728ca5ad7f0bad5439bf83ac", "href": "/files-processed/4DNFIJI2UQ1B/@@download/4DNFIJI2UQ1B.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "ad0428ce-42f2-4dff-936c-495a4bca853c", "display_title": "4DNFIJI2UQ1B - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/ad0428ce-42f2-4dff-936c-495a4bca853c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:41.096047+00:00"}}, {"accession": "4DNFIMCOEPSO", "file_size": 12550625, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/06269d74-22c7-4b30-9ff7-66798fc2e2e7/4DNFIMCOEPSO.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "06269d74-22c7-4b30-9ff7-66798fc2e2e7", "status": "released", "@id": "/files-processed/4DNFIMCOEPSO/", "display_title": "4DNFIMCOEPSO.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "05c0f9b1e6ebcd45385d65804942f3cd", "href": "/files-processed/4DNFIMCOEPSO/@@download/4DNFIMCOEPSO.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:27:08.944703+00:00"}}, {"accession": "4DNFIJAMWIW3", "file_size": 6565, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/7580600b-b5a4-4945-8e1d-6823ace792c3/4DNFIJAMWIW3.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "7580600b-b5a4-4945-8e1d-6823ace792c3", "status": "released", "higlass_uid": "CTwsmj6dT96wcCzheIsjtA", "@id": "/files-processed/4DNFIJAMWIW3/", "display_title": "4DNFIJAMWIW3.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "df23047b7b8ee61b7e6615c011ead999", "href": "/files-processed/4DNFIJAMWIW3/@@download/4DNFIJAMWIW3.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "4ae001c9-a5bb-4f97-8e7e-bf12e6582ba9", "display_title": "4DNFIJAMWIW3 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/4ae001c9-a5bb-4f97-8e7e-bf12e6582ba9/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:37.694999+00:00"}}]}, {"title": "GATC binned files", "description": "The files associated with the GATC bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 1.", "type": "supplementary", "files": [{"accession": "4DNFI4MRVYYN", "file_size": 45527696, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/2694494a-03be-4e2b-958e-f0db0e970caf/4DNFI4MRVYYN.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "2694494a-03be-4e2b-958e-f0db0e970caf", "status": "released", "@id": "/files-processed/4DNFI4MRVYYN/", "display_title": "4DNFI4MRVYYN.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2cffdf835161810af5f0054a0c2cb8aa", "href": "/files-processed/4DNFI4MRVYYN/@@download/4DNFI4MRVYYN.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:36.728169+00:00"}}, {"accession": "4DNFI61QQHWG", "file_size": 46860383, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/7784f082-6b69-4142-9ac1-69866db14573/4DNFI61QQHWG.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "7784f082-6b69-4142-9ac1-69866db14573", "status": "released", "@id": "/files-processed/4DNFI61QQHWG/", "display_title": "4DNFI61QQHWG.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "92b8e2b9da7d564d88d67b13f3528b00", "href": "/files-processed/4DNFI61QQHWG/@@download/4DNFI61QQHWG.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:57.734753+00:00"}}, {"accession": "4DNFIUCYBVD7", "file_size": 34980633, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8ea2f757-a9ec-4fd3-9f72-1935080542c2/4DNFIUCYBVD7.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "8ea2f757-a9ec-4fd3-9f72-1935080542c2", "status": "released", "higlass_uid": "b01616b1-73ee-4c51-9aa6-bb8c8af9867b", "@id": "/files-processed/4DNFIUCYBVD7/", "display_title": "4DNFIUCYBVD7.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c477c0898793bd100be797646d45b5f7", "href": "/files-processed/4DNFIUCYBVD7/@@download/4DNFIUCYBVD7.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "edc5dc25-afd5-4c38-9933-245abb3b89d3", "display_title": "4DNFIUCYBVD7 - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/edc5dc25-afd5-4c38-9933-245abb3b89d3/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:23.806447+00:00"}}, {"accession": "4DNFI6ZLOIZM", "file_size": 6593933, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a6ea5077-b624-4481-a8e2-160d7ec0b59e/4DNFI6ZLOIZM.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "a6ea5077-b624-4481-a8e2-160d7ec0b59e", "status": "released", "higlass_uid": "e94c435f-9a1b-44d9-93c3-88754131f0b6", "@id": "/files-processed/4DNFI6ZLOIZM/", "display_title": "4DNFI6ZLOIZM.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "87d55d3182b2f4da12ef22d56e9d3611", "href": "/files-processed/4DNFI6ZLOIZM/@@download/4DNFI6ZLOIZM.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "1b6a5d6d-80aa-4f10-b316-05b07d751e49", "display_title": "4DNFI6ZLOIZM - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/1b6a5d6d-80aa-4f10-b316-05b07d751e49/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:44.156478+00:00"}}]}], "processed_files": [{"href": "/files-processed/4DNFIWM369JN/@@download/4DNFIWM369JN.bam", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 837103315, "file_type_detailed": "alignments (bam)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d79f4d1a-f79f-4138-b231-484eae30cdfe/4DNFIWM369JN.bam", "file_classification": "processed file", "accession": "4DNFIWM369JN", "file_type": "alignments", "display_title": "4DNFIWM369JN.bam", "upload_key": "d79f4d1a-f79f-4138-b231-484eae30cdfe/4DNFIWM369JN.bam", "status": "released", "genome_assembly": "GRCm38", "md5sum": "d16ad981d21ecb34efbbedb770fa955c", "uuid": "d79f4d1a-f79f-4138-b231-484eae30cdfe", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIWM369JN/", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "display_title": "bam", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:29:40.336210+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}}, {"href": "/files-processed/4DNFIETQFGGP/@@download/4DNFIETQFGGP.bw", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 3947509, "file_type_detailed": "normalized counts (bw)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/34c64b65-2867-4107-aeb2-b5c19222e270/4DNFIETQFGGP.bw", "file_classification": "processed file", "accession": "4DNFIETQFGGP", "file_type": "normalized counts", "display_title": "4DNFIETQFGGP.bw", "upload_key": "34c64b65-2867-4107-aeb2-b5c19222e270/4DNFIETQFGGP.bw", "status": "released", "genome_assembly": "GRCm38", "md5sum": "5b440d087aa3a8c1f1e7c9e46ceb8e3c", "uuid": "34c64b65-2867-4107-aeb2-b5c19222e270", "higlass_uid": "765fb442-e6c6-4853-87be-7f01ddbf6264", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIETQFGGP/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/bw/", "display_title": "bw", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"status": "released", "uuid": "59aabadb-7c45-4b57-942e-51522cdfab16", "@id": "/higlass-view-configs/59aabadb-7c45-4b57-942e-51522cdfab16/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "display_title": "4DNFIETQFGGP - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:27:34.664662+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}}, {"href": "/files-processed/4DNFIUJD5AYL/@@download/4DNFIUJD5AYL.bed.gz", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 7865, "file_type_detailed": "LADs (bed)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/5b1d2c96-19cd-430a-b78a-447624ef6f1b/4DNFIUJD5AYL.bed.gz", "file_classification": "processed file", "accession": "4DNFIUJD5AYL", "file_type": "LADs", "display_title": "4DNFIUJD5AYL.bed.gz", "upload_key": "5b1d2c96-19cd-430a-b78a-447624ef6f1b/4DNFIUJD5AYL.bed.gz", "status": "released", "genome_assembly": "GRCm38", "md5sum": "5cf6e4be2365576eb1b2880f640ea9e0", "uuid": "5b1d2c96-19cd-430a-b78a-447624ef6f1b", "higlass_uid": "EoBOUFrHRHGoVReYhEPldA", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIUJD5AYL/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@id": "/file-formats/bed/", "display_title": "bed", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "extra_files": [{"md5sum": "11d025eb8d9d06f07bb2337b2a18b03e", "use_for": "visualization", "href": "/files-processed/4DNFIUJD5AYL/@@download/4DNFIUJD5AYL.beddb", "file_format": {"uuid": "76dc8c06-67d8-487b-8fc8-d841752a0b60", "status": "released", "file_format": "beddb", "@id": "/file-formats/beddb/", "@type": ["FileFormat", "Item"], "display_title": "beddb", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"status": "released", "uuid": "855678de-a3cb-4e60-a6ec-d8dbc87808e6", "@id": "/higlass-view-configs/855678de-a3cb-4e60-a6ec-d8dbc87808e6/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "display_title": "4DNFIUJD5AYL - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:26:30.874965+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}}], "external_references": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "experiment_categorizer": {"value": "Lmnb1 mouse protein", "field": "Target", "combined": "Target: Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2019-10-10T20:53:24.385061+00:00"}}, {"accession": "4DNEXKLIFH2Z", "files": [{"accession": "4DNFITTN9IUC", "file_type": "reads", "file_size": 1684417162, "display_title": "4DNFITTN9IUC.fastq.gz", "@id": "/files-fastq/4DNFITTN9IUC/", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b1f615b9-8b62-4dfa-9d8e-900e624a8424/4DNFITTN9IUC.fastq.gz", "file_type_detailed": "reads (fastq)", "@type": ["FileFastq", "File", "Item"], "status": "released", "md5sum": "56c136a8929236dd121c1e1cb9f00574", "file_classification": "raw file", "uuid": "b1f615b9-8b62-4dfa-9d8e-900e624a8424", "href": "/files-fastq/4DNFITTN9IUC/@@download/4DNFITTN9IUC.fastq.gz", "upload_key": "b1f615b9-8b62-4dfa-9d8e-900e624a8424/4DNFITTN9IUC.fastq.gz", "quality_metric": {"url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITTN9IUC/fastqc_report.html", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "status": "released", "@id": "/quality-metrics-fastqc/c3d0759a-2a43-4139-9c2e-4a3b10eddf04/", "overall_quality_status": "PASS", "Total Sequences": 15270942, "display_title": "QualityMetricFastqc from 2018-11-06", "Sequence length": "140", "uuid": "c3d0759a-2a43-4139-9c2e-4a3b10eddf04", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "@id": "/file-formats/fastq/", "status": "released", "file_format": "fastq", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bas-van-steensel-lab", "status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "raw file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "status": "released", "display_title": "DamID-seq with DAM-Lmnb1 on F121-9-CASTx129 (Tier 2) - 4DNEXKLIFH2Z", "@id": "/experiments-damid/4DNEXKLIFH2Z/", "uuid": "d58f8dc0-2913-4f10-a2ba-0e4e302fb702", "@type": ["ExperimentDamid", "Experiment", "Item"], "experiment_type": {"@id": "/experiment-types/damid-seq/", "assay_subclassification": "Proximity to Cellular Component", "status": "released", "assay_subclass_short": "Proximity-seq", "@type": ["ExperimentType", "Item"], "title": "DamID-seq", "display_title": "DamID-seq", "uuid": "b777a1da-8dc8-4473-9b8d-4f7716fb0a4a", "assay_classification": "Linear DNA Enrichment", "other_tags": ["1D"], "experiment_category": "Sequencing", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "biosample": {"display_title": "4DNBSSHJYUZT", "biosample_type": "stem cells", "uuid": "a6e16dde-1e92-49f6-92b7-9ae2ae01b483", "status": "released", "@type": ["Biosample", "Item"], "treatments_summary": "None", "@id": "/biosamples/4DNBSSHJYUZT/", "biosource_summary": "F121-9-CASTx129 (Tier 2)", "biosample_category": ["Tier 2", "Mouse stem cell"], "modifications_summary": "None", "accession": "4DNBSSHJYUZT", "biosource": [{"biosource_type": "stem cell derived cell line", "status": "released", "@id": "/biosources/4DNSRMG5APUM/", "@type": ["Biosource", "Item"], "display_title": "F121-9-CASTx129 (Tier 2) - 4DNSRMG5APUM", "cell_line_tier": "Tier 2", "accession": "4DNSRMG5APUM", "uuid": "f01caf67-dd73-40ae-9476-940f0762b9c2", "cell_line": {"uuid": "111201bc-8535-4448-903e-854af460a233", "preferred_name": "F121-9-CASTx129", "@id": "/ontology-terms/4DN:0000002/", "status": "released", "display_title": "F121-9-CASTx129", "term_id": "4DN:0000002", "term_name": "F121-9-CASTx129", "@type": ["OntologyTerm", "Item"], "slim_terms": [{"display_title": "cell line", "status": "released", "@type": ["OntologyTerm", "Item"], "@id": "/ontology-terms/CLO:0000031/", "uuid": "f9483d7e-4731-47d1-b8e0-1aac05ba2b49", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"@type": ["Organism", "Item"], "status": "released", "display_title": "M. musculus", "name": "mouse", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "@id": "/organisms/10090/", "scientific_name": "Mus musculus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"display_title": "stem cell", "term_name": "stem cell", "term_id": "CL:0000034", "status": "released", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "@type": ["OntologyTerm", "Item"], "preferred_name": "stem cell", "synonyms": ["animal stem cell"], "@id": "/ontology-terms/CL:0000034/", "slim_terms": [{"@id": "/ontology-terms/GO:0005623/", "status": "current", "uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/ontology-terms/CL:0000000/", "status": "released", "uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_culture_details": [{"display_title": "BiosampleCellCulture from 2018-10-22", "uuid": "1080b3d8-0446-4985-a097-5e46f873a35d", "@type": ["BiosampleCellCulture", "Item"], "@id": "/biosample-cell-cultures/1080b3d8-0446-4985-a097-5e46f873a35d/", "in_vitro_differentiated": "No", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "badges": [{"messages": ["Biosample receives gold status for being a 4DN Tier 1 or Tier 2 cell line that follows the approved SOP and contains all of the pertinent metadata information as required by the 4DN Samples working group."], "badge": {"description": "Gold biosample", "@type": ["Badge", "Item"], "uuid": "6c2b7409-4478-4e15-aabc-1a0df6b883e9", "badge_icon": "/static/img/badges/biosample-badge-gold-star.svg", "title": "Gold Biosample", "@id": "/badges/gold-biosample/", "display_title": "Gold Biosample", "status": "released", "commendation": "Gold Biosample", "badge_classification": "Commendation", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "other_processed_files": [{"title": "Other files - non-binned", "description": "Non-bin specific files for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFI2HAD8ZZ", "file_size": 2307647, "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1e7c67a2-1ee7-471e-994f-81cd4cb46b24/4DNFI2HAD8ZZ.html", "genome_assembly": "GRCm38", "file_type": "other", "uuid": "1e7c67a2-1ee7-471e-994f-81cd4cb46b24", "status": "released", "@id": "/files-processed/4DNFI2HAD8ZZ/", "display_title": "4DNFI2HAD8ZZ.html", "@type": ["FileProcessed", "File", "Item"], "md5sum": "492f5a3d872f2b7cf98270c80d6a345d", "href": "/files-processed/4DNFI2HAD8ZZ/@@download/4DNFI2HAD8ZZ.html", "file_type_detailed": "other (html)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/html/", "file_format": "html", "status": "released", "uuid": "8bd6fe41-6af8-43c9-b24a-d74241898f09", "@type": ["FileFormat", "Item"], "display_title": "html", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Other files - non-binned", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2019-10-10T20:51:44.924403+00:00"}}]}, {"title": "250 kb binned files", "description": "The files associated with the 250 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIEJNF63X", "file_size": 59743, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e0a8ec8f-f555-4736-bbdc-bfdff92609b3/4DNFIEJNF63X.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "e0a8ec8f-f555-4736-bbdc-bfdff92609b3", "status": "released", "@id": "/files-processed/4DNFIEJNF63X/", "display_title": "4DNFIEJNF63X.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ca0e28593acb50fee616b0cbeaa68650", "href": "/files-processed/4DNFIEJNF63X/@@download/4DNFIEJNF63X.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:00.417268+00:00"}}, {"accession": "4DNFIRH4DFAF", "file_size": 138272, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/97378dcb-c406-41a8-b92f-5b9fe599766f/4DNFIRH4DFAF.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "97378dcb-c406-41a8-b92f-5b9fe599766f", "status": "released", "@id": "/files-processed/4DNFIRH4DFAF/", "display_title": "4DNFIRH4DFAF.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "a41dedd7cd05f78c99d038fa6c284e9c", "href": "/files-processed/4DNFIRH4DFAF/@@download/4DNFIRH4DFAF.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:25.908376+00:00"}}, {"accession": "4DNFIXVWKF27", "file_size": 135670, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/2e7b6399-fa19-44ce-aba6-d9b9a4565182/4DNFIXVWKF27.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "2e7b6399-fa19-44ce-aba6-d9b9a4565182", "status": "released", "higlass_uid": "eb18672f-61ea-401d-8877-8fa7b6e3e864", "@id": "/files-processed/4DNFIXVWKF27/", "display_title": "4DNFIXVWKF27.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "f2c8ff218950a3236f09f9475905bfff", "href": "/files-processed/4DNFIXVWKF27/@@download/4DNFIXVWKF27.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "5ae64fa0-e7fe-4856-aacc-e29c9941818d", "display_title": "4DNFIXVWKF27 - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/5ae64fa0-e7fe-4856-aacc-e29c9941818d/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:46.508945+00:00"}}, {"accession": "4DNFIHX1YU91", "file_size": 195215, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1ad90b89-a6c2-4de3-8614-0e6866a9fcdc/4DNFIHX1YU91.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "1ad90b89-a6c2-4de3-8614-0e6866a9fcdc", "status": "released", "higlass_uid": "bec0b12b-b3dc-49e9-a2e9-d2212a4a3202", "@id": "/files-processed/4DNFIHX1YU91/", "display_title": "4DNFIHX1YU91.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "0f6699b0ab40b653645c6ef52162d246", "href": "/files-processed/4DNFIHX1YU91/@@download/4DNFIHX1YU91.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "6ecfb773-8708-4f11-9e9a-929f2479d0f4", "display_title": "4DNFIHX1YU91 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/6ecfb773-8708-4f11-9e9a-929f2479d0f4/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:11.125835+00:00"}}, {"accession": "4DNFIDFYKXIO", "file_size": 40639, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/b4588196-6c0b-4787-a940-4ddb7e69b1e9/4DNFIDFYKXIO.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "b4588196-6c0b-4787-a940-4ddb7e69b1e9", "status": "released", "@id": "/files-processed/4DNFIDFYKXIO/", "display_title": "4DNFIDFYKXIO.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1beef99c72f4ff21f9806a4a945bd474", "href": "/files-processed/4DNFIDFYKXIO/@@download/4DNFIDFYKXIO.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:39.554259+00:00"}}, {"accession": "4DNFIN6U8555", "file_size": 2111, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/74bdb99c-9df5-4412-aeba-8268c36316c4/4DNFIN6U8555.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "74bdb99c-9df5-4412-aeba-8268c36316c4", "status": "released", "higlass_uid": "LHSE3uyCT_qrvzlFDlAWWg", "@id": "/files-processed/4DNFIN6U8555/", "display_title": "4DNFIN6U8555.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1cedda629ed73b693835d3238db4bfff", "href": "/files-processed/4DNFIN6U8555/@@download/4DNFIN6U8555.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "03a88734-2251-4c9c-90b4-671d1fd6eb03", "display_title": "4DNFIN6U8555 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/03a88734-2251-4c9c-90b4-671d1fd6eb03/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "250 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:05.622703+00:00"}}]}, {"title": "100 kb binned files", "description": "The files associated with the 100 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIHKLUO7H", "file_size": 157493, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6649c6ea-c208-4b92-b31f-b08ea8167599/4DNFIHKLUO7H.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "6649c6ea-c208-4b92-b31f-b08ea8167599", "status": "released", "@id": "/files-processed/4DNFIHKLUO7H/", "display_title": "4DNFIHKLUO7H.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "5754ff4591d0f667e84011fd8108aad8", "href": "/files-processed/4DNFIHKLUO7H/@@download/4DNFIHKLUO7H.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:03.812468+00:00"}}, {"accession": "4DNFI2A6EPES", "file_size": 358882, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/aebe66ff-eebb-466e-941d-de8191be5a0e/4DNFI2A6EPES.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "aebe66ff-eebb-466e-941d-de8191be5a0e", "status": "released", "@id": "/files-processed/4DNFI2A6EPES/", "display_title": "4DNFI2A6EPES.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "8a852a0029e3904cbaa3f9c307377013", "href": "/files-processed/4DNFI2A6EPES/@@download/4DNFI2A6EPES.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:28.962818+00:00"}}, {"accession": "4DNFIW7YHBOS", "file_size": 276838, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/67e84c44-f013-4e6d-a381-7e1c72972efc/4DNFIW7YHBOS.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "67e84c44-f013-4e6d-a381-7e1c72972efc", "status": "released", "higlass_uid": "14dcc12f-49af-41b1-a915-19a0a679129a", "@id": "/files-processed/4DNFIW7YHBOS/", "display_title": "4DNFIW7YHBOS.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "21c0a6c533a273145bbc63a6ca00361f", "href": "/files-processed/4DNFIW7YHBOS/@@download/4DNFIW7YHBOS.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "7588b5dc-41bb-45cd-bd7e-8a81cac83525", "display_title": "4DNFIW7YHBOS - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/7588b5dc-41bb-45cd-bd7e-8a81cac83525/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:49.906286+00:00"}}, {"accession": "4DNFIOMJDFAC", "file_size": 435583, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/c71c68c4-6c9a-42ce-8a2f-7e7b99fc6195/4DNFIOMJDFAC.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "c71c68c4-6c9a-42ce-8a2f-7e7b99fc6195", "status": "released", "higlass_uid": "ec419587-1648-4b1c-bc60-10de32e36afd", "@id": "/files-processed/4DNFIOMJDFAC/", "display_title": "4DNFIOMJDFAC.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c0e3c237f56c916ee79f5d6612ede894", "href": "/files-processed/4DNFIOMJDFAC/@@download/4DNFIOMJDFAC.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "fc4b61fb-a1e5-428a-af96-4d4dab884151", "display_title": "4DNFIOMJDFAC - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/fc4b61fb-a1e5-428a-af96-4d4dab884151/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:14.045192+00:00"}}, {"accession": "4DNFIMHAHZ3F", "file_size": 112808, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a0df40b5-c807-4ba6-b4df-99007e254aa2/4DNFIMHAHZ3F.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "a0df40b5-c807-4ba6-b4df-99007e254aa2", "status": "released", "@id": "/files-processed/4DNFIMHAHZ3F/", "display_title": "4DNFIMHAHZ3F.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2d91c95c40b90d08ed9a9c551df5c772", "href": "/files-processed/4DNFIMHAHZ3F/@@download/4DNFIMHAHZ3F.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:42.925150+00:00"}}, {"accession": "4DNFIVQCRPG1", "file_size": 3285, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bf13beac-02f1-4e08-b5c8-ba5fabfa8685/4DNFIVQCRPG1.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "bf13beac-02f1-4e08-b5c8-ba5fabfa8685", "status": "released", "higlass_uid": "IPhwTbFhTaePehEBjonmhw", "@id": "/files-processed/4DNFIVQCRPG1/", "display_title": "4DNFIVQCRPG1.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c268e697dbe4635a1d226d1687ce7e2e", "href": "/files-processed/4DNFIVQCRPG1/@@download/4DNFIVQCRPG1.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "86ee34d4-7266-49e5-9ba7-da9a4b3ea996", "display_title": "4DNFIVQCRPG1 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/86ee34d4-7266-49e5-9ba7-da9a4b3ea996/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "100 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:09.175816+00:00"}}]}, {"title": "80 kb binned files", "description": "The files associated with the 80 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIGTO1PG9", "file_size": 199506, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a306453a-8975-4584-bab6-5e25e6756e5e/4DNFIGTO1PG9.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "a306453a-8975-4584-bab6-5e25e6756e5e", "status": "released", "@id": "/files-processed/4DNFIGTO1PG9/", "display_title": "4DNFIGTO1PG9.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "9ddb4594e39966fc0dde9dbb3f82abe9", "href": "/files-processed/4DNFIGTO1PG9/@@download/4DNFIGTO1PG9.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:07.524764+00:00"}}, {"accession": "4DNFIQZ2IATS", "file_size": 452164, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/3c22c5fb-3198-4290-9fc4-ba60bce2150c/4DNFIQZ2IATS.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "3c22c5fb-3198-4290-9fc4-ba60bce2150c", "status": "released", "@id": "/files-processed/4DNFIQZ2IATS/", "display_title": "4DNFIQZ2IATS.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "6d6fcba38f18dfb10d66be1e48b80896", "href": "/files-processed/4DNFIQZ2IATS/@@download/4DNFIQZ2IATS.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:32.219573+00:00"}}, {"accession": "4DNFI29H6VHT", "file_size": 325370, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1a0db311-cf66-4180-a8b6-2477a210f8fd/4DNFI29H6VHT.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "1a0db311-cf66-4180-a8b6-2477a210f8fd", "status": "released", "higlass_uid": "fa0cdbf6-abb5-4038-bff8-9c920495d305", "@id": "/files-processed/4DNFI29H6VHT/", "display_title": "4DNFI29H6VHT.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "08d69050397c0e0025a010f1cb4cced0", "href": "/files-processed/4DNFI29H6VHT/@@download/4DNFI29H6VHT.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "f0244792-7745-4134-83fc-b0a870beb817", "display_title": "4DNFI29H6VHT - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/f0244792-7745-4134-83fc-b0a870beb817/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:53.230336+00:00"}}, {"accession": "4DNFIM98C5GZ", "file_size": 530693, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/70364e0a-b10f-4c1d-a9ae-5d04f6c3a108/4DNFIM98C5GZ.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "70364e0a-b10f-4c1d-a9ae-5d04f6c3a108", "status": "released", "higlass_uid": "98829f51-dcfe-4d0d-bd1a-2b87e3e6e0b2", "@id": "/files-processed/4DNFIM98C5GZ/", "display_title": "4DNFIM98C5GZ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "30cc04891bcc94952cfc8194b436dded", "href": "/files-processed/4DNFIM98C5GZ/@@download/4DNFIM98C5GZ.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "950b01f6-1299-439f-a5c7-fa21cb0e6b2e", "display_title": "4DNFIM98C5GZ - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/950b01f6-1299-439f-a5c7-fa21cb0e6b2e/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:17.240727+00:00"}}, {"accession": "4DNFIVN6AW48", "file_size": 143462, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f52dbb9e-31ea-4b09-9709-40dea7fbc13b/4DNFIVN6AW48.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "f52dbb9e-31ea-4b09-9709-40dea7fbc13b", "status": "released", "@id": "/files-processed/4DNFIVN6AW48/", "display_title": "4DNFIVN6AW48.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "3d4b4f7eab250dbfb0a468269e7eaf46", "href": "/files-processed/4DNFIVN6AW48/@@download/4DNFIVN6AW48.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:46.085721+00:00"}}, {"accession": "4DNFI3WJAYDQ", "file_size": 3794, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/da530ab4-91ac-4379-921c-9af05fd8abd6/4DNFI3WJAYDQ.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "da530ab4-91ac-4379-921c-9af05fd8abd6", "status": "released", "higlass_uid": "aVrrp2G6T2KuWBnp_3DYsg", "@id": "/files-processed/4DNFI3WJAYDQ/", "display_title": "4DNFI3WJAYDQ.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "89b537d989337e9dc401dfa0af822164", "href": "/files-processed/4DNFI3WJAYDQ/@@download/4DNFI3WJAYDQ.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "2ec37050-2acf-45ca-84be-2bf6949ee0b1", "display_title": "4DNFI3WJAYDQ - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/2ec37050-2acf-45ca-84be-2bf6949ee0b1/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "80 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:12.758820+00:00"}}]}, {"title": "50 kb binned files", "description": "The files associated with the 50 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIHO6UNAU", "file_size": 310991, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/57685e38-5564-4b92-b70d-d7bdb19736dd/4DNFIHO6UNAU.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "57685e38-5564-4b92-b70d-d7bdb19736dd", "status": "released", "@id": "/files-processed/4DNFIHO6UNAU/", "display_title": "4DNFIHO6UNAU.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "155d98dae0e5c26f04835f9a447616a5", "href": "/files-processed/4DNFIHO6UNAU/@@download/4DNFIHO6UNAU.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:11.362254+00:00"}}, {"accession": "4DNFID7QFLAO", "file_size": 712607, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/b21a1b2d-6f7e-490b-98b6-11370b80ed35/4DNFID7QFLAO.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "b21a1b2d-6f7e-490b-98b6-11370b80ed35", "status": "released", "@id": "/files-processed/4DNFID7QFLAO/", "display_title": "4DNFID7QFLAO.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "f5be7021f42d99c27e1d1128ce2e42e6", "href": "/files-processed/4DNFID7QFLAO/@@download/4DNFID7QFLAO.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:35.706873+00:00"}}, {"accession": "4DNFIXUTMBHJ", "file_size": 490278, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/11d18092-2075-4e4d-a44f-e6092a3a41b9/4DNFIXUTMBHJ.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "11d18092-2075-4e4d-a44f-e6092a3a41b9", "status": "released", "higlass_uid": "7afca3c0-fdf0-44d9-83b7-20721d3f4b16", "@id": "/files-processed/4DNFIXUTMBHJ/", "display_title": "4DNFIXUTMBHJ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "6edc4e041a2b95f4041ab2da2ef1962e", "href": "/files-processed/4DNFIXUTMBHJ/@@download/4DNFIXUTMBHJ.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "21a3ef6e-5a65-4ebc-9514-629287f00249", "display_title": "4DNFIXUTMBHJ - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/21a3ef6e-5a65-4ebc-9514-629287f00249/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:56.788087+00:00"}}, {"accession": "4DNFIJTMVRE5", "file_size": 827528, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/36aaaa3e-b6f1-4d91-b76a-5b6fe80d0cb1/4DNFIJTMVRE5.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "36aaaa3e-b6f1-4d91-b76a-5b6fe80d0cb1", "status": "released", "higlass_uid": "d3caef4e-2e8f-4bfe-9e98-af7e9ff33d71", "@id": "/files-processed/4DNFIJTMVRE5/", "display_title": "4DNFIJTMVRE5.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "5927f563e833263dbc4583f701f05b6f", "href": "/files-processed/4DNFIJTMVRE5/@@download/4DNFIJTMVRE5.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "85fc0c33-32c1-4fe5-b099-ca3f89cf21c5", "display_title": "4DNFIJTMVRE5 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/85fc0c33-32c1-4fe5-b099-ca3f89cf21c5/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:20.812793+00:00"}}, {"accession": "4DNFI696FLLY", "file_size": 221872, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fa377b19-b325-455e-a1ca-82069d7e8a3b/4DNFI696FLLY.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "fa377b19-b325-455e-a1ca-82069d7e8a3b", "status": "released", "@id": "/files-processed/4DNFI696FLLY/", "display_title": "4DNFI696FLLY.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "a865f905c9f3b07b4c624a51ea8595c6", "href": "/files-processed/4DNFI696FLLY/@@download/4DNFI696FLLY.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:49.502155+00:00"}}, {"accession": "4DNFIWH6CRUN", "file_size": 4426, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/21b8bb4c-efa7-4100-a55b-007d5d767907/4DNFIWH6CRUN.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "21b8bb4c-efa7-4100-a55b-007d5d767907", "status": "released", "higlass_uid": "eSI3uFESQRKz49pU3Kpk0g", "@id": "/files-processed/4DNFIWH6CRUN/", "display_title": "4DNFIWH6CRUN.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ece122c7e678605dfa884ab8a622e9e3", "href": "/files-processed/4DNFIWH6CRUN/@@download/4DNFIWH6CRUN.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "d666cae2-7f6e-424c-9949-a39881b4e4ce", "display_title": "4DNFIWH6CRUN - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/d666cae2-7f6e-424c-9949-a39881b4e4ce/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "50 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:15.998290+00:00"}}]}, {"title": "25 kb binned files", "description": "The files associated with the 25 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIEDGYKXK", "file_size": 618850, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fe31d69c-0e4b-4039-a7d8-8676f6e3a8f4/4DNFIEDGYKXK.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "fe31d69c-0e4b-4039-a7d8-8676f6e3a8f4", "status": "released", "@id": "/files-processed/4DNFIEDGYKXK/", "display_title": "4DNFIEDGYKXK.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "2ca357fd9549fd18097ac577a58200bb", "href": "/files-processed/4DNFIEDGYKXK/@@download/4DNFIEDGYKXK.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:15.007838+00:00"}}, {"accession": "4DNFI9ZQRLY4", "file_size": 1414132, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/519e6e5d-1ab8-473c-999d-263c9be44b33/4DNFI9ZQRLY4.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "519e6e5d-1ab8-473c-999d-263c9be44b33", "status": "released", "@id": "/files-processed/4DNFI9ZQRLY4/", "display_title": "4DNFI9ZQRLY4.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1b4b306b091f6b8b884121512aadd246", "href": "/files-processed/4DNFI9ZQRLY4/@@download/4DNFI9ZQRLY4.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:38.744314+00:00"}}, {"accession": "4DNFITOODLWZ", "file_size": 900945, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6c61bfeb-13e0-41ed-a31d-e4fc2e2dd04f/4DNFITOODLWZ.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "6c61bfeb-13e0-41ed-a31d-e4fc2e2dd04f", "status": "released", "higlass_uid": "de834abc-43ad-483d-953a-3a6f6d12662b", "@id": "/files-processed/4DNFITOODLWZ/", "display_title": "4DNFITOODLWZ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ccb4cc29ac0a283d0979993cfa9fe190", "href": "/files-processed/4DNFITOODLWZ/@@download/4DNFITOODLWZ.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "6e680d9a-ba06-4d5c-9e0c-5a812f6eb0de", "display_title": "4DNFITOODLWZ - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/6e680d9a-ba06-4d5c-9e0c-5a812f6eb0de/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:00.891936+00:00"}}, {"accession": "4DNFIR4O5MYS", "file_size": 1613815, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/ee181762-93fa-4391-b960-26d92e40a1df/4DNFIR4O5MYS.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "ee181762-93fa-4391-b960-26d92e40a1df", "status": "released", "higlass_uid": "d19162b9-bfa4-4b46-a6d4-ceb87c6fca18", "@id": "/files-processed/4DNFIR4O5MYS/", "display_title": "4DNFIR4O5MYS.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c669be6173e4981a8c9659959de4f158", "href": "/files-processed/4DNFIR4O5MYS/@@download/4DNFIR4O5MYS.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "5ed061f4-33fa-407b-9c4a-50f068d166e5", "display_title": "4DNFIR4O5MYS - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/5ed061f4-33fa-407b-9c4a-50f068d166e5/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:24.199146+00:00"}}, {"accession": "4DNFIPIEAIE4", "file_size": 456176, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8438ee25-06c6-424d-a6ce-a59dc6c6994f/4DNFIPIEAIE4.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "8438ee25-06c6-424d-a6ce-a59dc6c6994f", "status": "released", "@id": "/files-processed/4DNFIPIEAIE4/", "display_title": "4DNFIPIEAIE4.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "231e80ad18c268c1f009ba4c0be9598d", "href": "/files-processed/4DNFIPIEAIE4/@@download/4DNFIPIEAIE4.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:52.778016+00:00"}}, {"accession": "4DNFIO6GEDX7", "file_size": 6175, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/962c9c5f-2318-469f-bc11-d89c5b1ad008/4DNFIO6GEDX7.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "962c9c5f-2318-469f-bc11-d89c5b1ad008", "status": "released", "higlass_uid": "e13yVcaPTFmLmqD_5I9ifw", "@id": "/files-processed/4DNFIO6GEDX7/", "display_title": "4DNFIO6GEDX7.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "9f36a382ff96da229b6396d414c90228", "href": "/files-processed/4DNFIO6GEDX7/@@download/4DNFIO6GEDX7.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "b33574d1-55ce-4662-9caa-8192df004b3a", "display_title": "4DNFIO6GEDX7 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/b33574d1-55ce-4662-9caa-8192df004b3a/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "25 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:19.172411+00:00"}}]}, {"title": "20 kb binned files", "description": "The files associated with the 20 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIQ3LQZHI", "file_size": 767469, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/dc6238a3-1d5c-4a03-9c46-6e97309681b7/4DNFIQ3LQZHI.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "dc6238a3-1d5c-4a03-9c46-6e97309681b7", "status": "released", "@id": "/files-processed/4DNFIQ3LQZHI/", "display_title": "4DNFIQ3LQZHI.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "8aa8d098d3e0c2460b59e682434c33b0", "href": "/files-processed/4DNFIQ3LQZHI/@@download/4DNFIQ3LQZHI.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:18.457261+00:00"}}, {"accession": "4DNFIIW8RHB4", "file_size": 1754393, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/52789f4c-44d9-493e-ab36-31c1f9522213/4DNFIIW8RHB4.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "52789f4c-44d9-493e-ab36-31c1f9522213", "status": "released", "@id": "/files-processed/4DNFIIW8RHB4/", "display_title": "4DNFIIW8RHB4.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "aff1362b74a5245d75f1a463a247afe0", "href": "/files-processed/4DNFIIW8RHB4/@@download/4DNFIIW8RHB4.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:41.629418+00:00"}}, {"accession": "4DNFI4ITDTEG", "file_size": 1076433, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d319a0f8-edb5-4653-9e2a-2bbe8f78c045/4DNFI4ITDTEG.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "d319a0f8-edb5-4653-9e2a-2bbe8f78c045", "status": "released", "higlass_uid": "e25402da-7ca9-4506-ab65-d0669f4be168", "@id": "/files-processed/4DNFI4ITDTEG/", "display_title": "4DNFI4ITDTEG.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ae70252083c24e7d26e81cab07a362d2", "href": "/files-processed/4DNFI4ITDTEG/@@download/4DNFI4ITDTEG.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "83fb7764-4566-4cbd-93f2-dce7e66fa3ea", "display_title": "4DNFI4ITDTEG - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/83fb7764-4566-4cbd-93f2-dce7e66fa3ea/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:04.623615+00:00"}}, {"accession": "4DNFIRRYO3N1", "file_size": 1283553, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/90ecf982-0ea2-4cc7-b0e1-61efe2edac21/4DNFIRRYO3N1.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "90ecf982-0ea2-4cc7-b0e1-61efe2edac21", "status": "released", "higlass_uid": "22158cf1-fd84-410c-8dfe-8b8aa0321421", "@id": "/files-processed/4DNFIRRYO3N1/", "display_title": "4DNFIRRYO3N1.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "bfe5350810976657aff909b2f230aeb1", "href": "/files-processed/4DNFIRRYO3N1/@@download/4DNFIRRYO3N1.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "d8567ceb-edb0-49d5-97cb-7afae0cd26a7", "display_title": "4DNFIRRYO3N1 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/d8567ceb-edb0-49d5-97cb-7afae0cd26a7/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:27.433745+00:00"}}, {"accession": "4DNFI23KNNCU", "file_size": 572498, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/324ab33b-ea8b-4f10-a74b-a17bab56b121/4DNFI23KNNCU.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "324ab33b-ea8b-4f10-a74b-a17bab56b121", "status": "released", "@id": "/files-processed/4DNFI23KNNCU/", "display_title": "4DNFI23KNNCU.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "22560dc61a793a08a300d085f8278853", "href": "/files-processed/4DNFI23KNNCU/@@download/4DNFI23KNNCU.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:55.924331+00:00"}}, {"accession": "4DNFIAMGZQSH", "file_size": 6910, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f152c2bc-2cd9-41c1-9e56-b17b91f527d4/4DNFIAMGZQSH.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "f152c2bc-2cd9-41c1-9e56-b17b91f527d4", "status": "released", "higlass_uid": "byPe3WGASneLpMVKHc8Dlg", "@id": "/files-processed/4DNFIAMGZQSH/", "display_title": "4DNFIAMGZQSH.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "de0d109df73144e5171453a6bd3aae14", "href": "/files-processed/4DNFIAMGZQSH/@@download/4DNFIAMGZQSH.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "464b34f7-54d7-40f0-9848-3f6e98741865", "display_title": "4DNFIAMGZQSH - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/464b34f7-54d7-40f0-9848-3f6e98741865/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "20 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:22.700315+00:00"}}]}, {"title": "10 kb binned files", "description": "The files associated with the 10 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIRY82NQK", "file_size": 1530731, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4e154ab1-650f-41b0-8660-f10fd3aa0187/4DNFIRY82NQK.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "4e154ab1-650f-41b0-8660-f10fd3aa0187", "status": "released", "@id": "/files-processed/4DNFIRY82NQK/", "display_title": "4DNFIRY82NQK.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ae5fd420f59f67faeb42ba2ed50fbab3", "href": "/files-processed/4DNFIRY82NQK/@@download/4DNFIRY82NQK.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:22.022619+00:00"}}, {"accession": "4DNFIQ7GU38K", "file_size": 3218279, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/877ed98c-cfdb-4f0d-bddf-3787640f94d7/4DNFIQ7GU38K.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "877ed98c-cfdb-4f0d-bddf-3787640f94d7", "status": "released", "@id": "/files-processed/4DNFIQ7GU38K/", "display_title": "4DNFIQ7GU38K.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "90339075cb7a2079089e55c2a32c3dc0", "href": "/files-processed/4DNFIQ7GU38K/@@download/4DNFIQ7GU38K.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:44.430123+00:00"}}, {"accession": "4DNFIDVMEGSA", "file_size": 2034416, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bc3e9c0a-1ffe-49cf-9d46-dfa6ba36ab91/4DNFIDVMEGSA.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "bc3e9c0a-1ffe-49cf-9d46-dfa6ba36ab91", "status": "released", "higlass_uid": "ef42ff53-c4be-4822-ba18-ffcb556b6e80", "@id": "/files-processed/4DNFIDVMEGSA/", "display_title": "4DNFIDVMEGSA.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "fb8305a7085911fdf3bd8994582d903c", "href": "/files-processed/4DNFIDVMEGSA/@@download/4DNFIDVMEGSA.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "2c9c5234-ab1f-4a4d-bad0-f0f582525e25", "display_title": "4DNFIDVMEGSA - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/2c9c5234-ab1f-4a4d-bad0-f0f582525e25/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:08.318669+00:00"}}, {"accession": "4DNFI5URJXC2", "file_size": 2412482, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/90d1ac46-34ed-43d2-9e94-6d4af971871a/4DNFI5URJXC2.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "90d1ac46-34ed-43d2-9e94-6d4af971871a", "status": "released", "higlass_uid": "44f94e60-0fc3-4eef-a0f6-39f81f6035d1", "@id": "/files-processed/4DNFI5URJXC2/", "display_title": "4DNFI5URJXC2.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "07ba8db1959aed1a6cf4e71ac4ba5f33", "href": "/files-processed/4DNFI5URJXC2/@@download/4DNFI5URJXC2.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "d4b5d3f0-4524-4812-b0a1-5c8c528a11e7", "display_title": "4DNFI5URJXC2 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/d4b5d3f0-4524-4812-b0a1-5c8c528a11e7/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:30.736536+00:00"}}, {"accession": "4DNFIFO1WP9Q", "file_size": 1200829, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6db4c018-b97d-4da5-8f0d-9338adba16d8/4DNFIFO1WP9Q.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "6db4c018-b97d-4da5-8f0d-9338adba16d8", "status": "released", "@id": "/files-processed/4DNFIFO1WP9Q/", "display_title": "4DNFIFO1WP9Q.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "0aa8fa4447e12a5b5d309405dee9c106", "href": "/files-processed/4DNFIFO1WP9Q/@@download/4DNFIFO1WP9Q.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:26:58.967760+00:00"}}, {"accession": "4DNFIYHHEMKW", "file_size": 13131, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/9f7a55c0-753c-414d-b6e1-69e97d666011/4DNFIYHHEMKW.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "9f7a55c0-753c-414d-b6e1-69e97d666011", "status": "released", "higlass_uid": "HmCS8HNUT2mRT8T2V14i1g", "@id": "/files-processed/4DNFIYHHEMKW/", "display_title": "4DNFIYHHEMKW.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "50381b6f37db1e341b476a7dd93b3642", "href": "/files-processed/4DNFIYHHEMKW/@@download/4DNFIYHHEMKW.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "5b1f8bfd-c116-48aa-92d2-12e3da983b61", "display_title": "4DNFIYHHEMKW - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/5b1f8bfd-c116-48aa-92d2-12e3da983b61/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "10 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:26.368501+00:00"}}]}, {"title": "Additional 5 kb binned files", "description": "Additional files associated with the 5 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFI4EVMS44", "file_size": 2951694, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f6925ff5-c311-4d3e-a33e-123638df8567/4DNFI4EVMS44.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "f6925ff5-c311-4d3e-a33e-123638df8567", "status": "released", "@id": "/files-processed/4DNFI4EVMS44/", "display_title": "4DNFI4EVMS44.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "3c78c4427a30e0d7d5b073205c2a20f1", "href": "/files-processed/4DNFI4EVMS44/@@download/4DNFI4EVMS44.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:25.517700+00:00"}}, {"accession": "4DNFINDWZ1AD", "file_size": 5241119, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/342be922-c878-4d05-82aa-10d4545d6424/4DNFINDWZ1AD.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "342be922-c878-4d05-82aa-10d4545d6424", "status": "released", "@id": "/files-processed/4DNFINDWZ1AD/", "display_title": "4DNFINDWZ1AD.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "d7a8f0422561eda8fc71c4a5f1f1e0be", "href": "/files-processed/4DNFINDWZ1AD/@@download/4DNFINDWZ1AD.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:47.508672+00:00"}}, {"accession": "4DNFIEA2EJGZ", "file_size": 3778875, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/3e9f5fa0-e874-4e9b-b2fd-324688e17153/4DNFIEA2EJGZ.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "3e9f5fa0-e874-4e9b-b2fd-324688e17153", "status": "released", "higlass_uid": "c6d972e9-d4be-4ef2-af2d-398e51c7b217", "@id": "/files-processed/4DNFIEA2EJGZ/", "display_title": "4DNFIEA2EJGZ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "5f8239481331e8b19117f2a5b2a4c21b", "href": "/files-processed/4DNFIEA2EJGZ/@@download/4DNFIEA2EJGZ.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "cfbc442c-f5b8-45a8-a701-04dde7fb161c", "display_title": "4DNFIEA2EJGZ - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/cfbc442c-f5b8-45a8-a701-04dde7fb161c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:12.225330+00:00"}}, {"accession": "4DNFID312QTU", "file_size": 2456994, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/8e39c59f-9503-4020-8b97-c353f0d4c939/4DNFID312QTU.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "8e39c59f-9503-4020-8b97-c353f0d4c939", "status": "released", "@id": "/files-processed/4DNFID312QTU/", "display_title": "4DNFID312QTU.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1a6e94448b8e21421ed14654c2674aa0", "href": "/files-processed/4DNFID312QTU/@@download/4DNFID312QTU.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "Additional 5 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:27:02.162115+00:00"}}]}, {"title": "2 kb binned files", "description": "The files associated with the 2 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFIJZ275KE", "file_size": 7123315, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/3ce253dd-e279-4d67-ba3e-3b3d7b7e1c44/4DNFIJZ275KE.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "3ce253dd-e279-4d67-ba3e-3b3d7b7e1c44", "status": "released", "@id": "/files-processed/4DNFIJZ275KE/", "display_title": "4DNFIJZ275KE.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4b990afde21748c76f292775730e5ed5", "href": "/files-processed/4DNFIJZ275KE/@@download/4DNFIJZ275KE.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:29.020621+00:00"}}, {"accession": "4DNFIFI4WJMC", "file_size": 9976928, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/499d1e9a-bdda-463c-9860-9151376bf62b/4DNFIFI4WJMC.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "499d1e9a-bdda-463c-9860-9151376bf62b", "status": "released", "@id": "/files-processed/4DNFIFI4WJMC/", "display_title": "4DNFIFI4WJMC.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "9e7fb7fbadd812ee50b4175ed8660f53", "href": "/files-processed/4DNFIFI4WJMC/@@download/4DNFIFI4WJMC.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:50.715197+00:00"}}, {"accession": "4DNFIH8T5ETT", "file_size": 8423044, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/aae60c16-fad1-4d5e-8926-e9e374aab956/4DNFIH8T5ETT.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "aae60c16-fad1-4d5e-8926-e9e374aab956", "status": "released", "higlass_uid": "898143b7-2bdf-4c8d-b654-841136500f44", "@id": "/files-processed/4DNFIH8T5ETT/", "display_title": "4DNFIH8T5ETT.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "cbdf2c369b664bbf1c7fe2137f9f2550", "href": "/files-processed/4DNFIH8T5ETT/@@download/4DNFIH8T5ETT.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "62a693e5-84f7-4e56-bdca-6328d8e715e1", "display_title": "4DNFIH8T5ETT - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/62a693e5-84f7-4e56-bdca-6328d8e715e1/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:15.813018+00:00"}}, {"accession": "4DNFIKN6GIWL", "file_size": 6716861, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/2adf5b6e-b548-419d-925c-79279a530ef7/4DNFIKN6GIWL.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "2adf5b6e-b548-419d-925c-79279a530ef7", "status": "released", "higlass_uid": "c644c14d-46dd-475d-8681-78ad967c2e77", "@id": "/files-processed/4DNFIKN6GIWL/", "display_title": "4DNFIKN6GIWL.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "03e722935d3a825c6751d5c15cb394d6", "href": "/files-processed/4DNFIKN6GIWL/@@download/4DNFIKN6GIWL.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "687affd3-9d57-4eb5-90a2-0d720adafd0c", "display_title": "4DNFIKN6GIWL - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/687affd3-9d57-4eb5-90a2-0d720adafd0c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:36.886985+00:00"}}, {"accession": "4DNFIJU5YP3O", "file_size": 6270751, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/cfba3162-49cb-4287-9bd1-8cd13b6282fb/4DNFIJU5YP3O.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "cfba3162-49cb-4287-9bd1-8cd13b6282fb", "status": "released", "@id": "/files-processed/4DNFIJU5YP3O/", "display_title": "4DNFIJU5YP3O.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "1e0fcc17c641c833e9db5c7f6b58f573", "href": "/files-processed/4DNFIJU5YP3O/@@download/4DNFIJU5YP3O.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:27:05.238410+00:00"}}, {"accession": "4DNFIXI5D1XH", "file_size": 13366, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/7977f153-b666-4c43-b4ed-565346b3a074/4DNFIXI5D1XH.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "7977f153-b666-4c43-b4ed-565346b3a074", "status": "released", "higlass_uid": "ZWy_D3naQdSVPQ0Co9Csiw", "@id": "/files-processed/4DNFIXI5D1XH/", "display_title": "4DNFIXI5D1XH.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "4b671137efc29ce2d3c97aab111463ef", "href": "/files-processed/4DNFIXI5D1XH/@@download/4DNFIXI5D1XH.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "a88d7ba3-5639-49c3-ac3d-d4cbc1c042eb", "display_title": "4DNFIXI5D1XH - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/a88d7ba3-5639-49c3-ac3d-d4cbc1c042eb/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "2 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:33.108585+00:00"}}]}, {"title": "1 kb binned files", "description": "The files associated with the 1 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFICTRZANN", "file_size": 13964609, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fe73657a-c67e-4124-8717-6bfae07654a3/4DNFICTRZANN.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "fe73657a-c67e-4124-8717-6bfae07654a3", "status": "released", "@id": "/files-processed/4DNFICTRZANN/", "display_title": "4DNFICTRZANN.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "5c9c5a5a1d2fc099e1854f5b9fb1a228", "href": "/files-processed/4DNFICTRZANN/@@download/4DNFICTRZANN.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:32.388387+00:00"}}, {"accession": "4DNFIKLDRIXK", "file_size": 16613437, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/7210a0ad-83c3-410a-b569-c40ac39b05a4/4DNFIKLDRIXK.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "7210a0ad-83c3-410a-b569-c40ac39b05a4", "status": "released", "@id": "/files-processed/4DNFIKLDRIXK/", "display_title": "4DNFIKLDRIXK.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ff0bc4f3cc3a63cca03eedfb32ba3a92", "href": "/files-processed/4DNFIKLDRIXK/@@download/4DNFIKLDRIXK.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:53.768770+00:00"}}, {"accession": "4DNFINEES6YO", "file_size": 15850316, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/425cfbd2-63eb-4264-8637-2acd6ebb7047/4DNFINEES6YO.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "425cfbd2-63eb-4264-8637-2acd6ebb7047", "status": "released", "higlass_uid": "e0e190ac-f879-46ec-afa2-707933c2b16e", "@id": "/files-processed/4DNFINEES6YO/", "display_title": "4DNFINEES6YO.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "b5807150d801e368788a67d0b528298d", "href": "/files-processed/4DNFINEES6YO/@@download/4DNFINEES6YO.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "d0c89a65-33aa-4ffd-b7a5-430fbb4c7077", "display_title": "4DNFINEES6YO - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/d0c89a65-33aa-4ffd-b7a5-430fbb4c7077/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:19.269475+00:00"}}, {"accession": "4DNFI94IN8XQ", "file_size": 9008197, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/624cec13-9624-436e-960b-a06ead9f19f0/4DNFI94IN8XQ.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "624cec13-9624-436e-960b-a06ead9f19f0", "status": "released", "higlass_uid": "264af739-7f8d-445f-8e11-7c4a3f4c0cc0", "@id": "/files-processed/4DNFI94IN8XQ/", "display_title": "4DNFI94IN8XQ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "7a560bc443555cc6b2d3113376b8c247", "href": "/files-processed/4DNFI94IN8XQ/@@download/4DNFI94IN8XQ.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "a52f088b-378c-4130-995c-8982451f5dd4", "display_title": "4DNFI94IN8XQ - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/a52f088b-378c-4130-995c-8982451f5dd4/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:40.141565+00:00"}}, {"accession": "4DNFIJ8XVL6H", "file_size": 12655524, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/acec59f7-3028-4c23-a64b-2f87ad445cac/4DNFIJ8XVL6H.txt.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "acec59f7-3028-4c23-a64b-2f87ad445cac", "status": "released", "@id": "/files-processed/4DNFIJ8XVL6H/", "display_title": "4DNFIJ8XVL6H.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "ed5cb9787a8865d18898158af4eca9fd", "href": "/files-processed/4DNFIJ8XVL6H/@@download/4DNFIJ8XVL6H.txt.gz", "file_type_detailed": "LADs (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2023-01-26T18:27:39.625156+00:00"}}, {"accession": "4DNFIGNXS9HH", "file_size": 8008, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/143bd0ab-9e0c-4ee9-b1a9-1070a95433ba/4DNFIGNXS9HH.bed.gz", "genome_assembly": "GRCm38", "file_type": "LADs", "uuid": "143bd0ab-9e0c-4ee9-b1a9-1070a95433ba", "status": "released", "higlass_uid": "NpJhOkjSTli_JldAqNXmeg", "@id": "/files-processed/4DNFIGNXS9HH/", "display_title": "4DNFIGNXS9HH.bed.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c739ac4d0305c9447146450ea53948d9", "href": "/files-processed/4DNFIGNXS9HH/@@download/4DNFIGNXS9HH.bed.gz", "file_type_detailed": "LADs (bed)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "e5fd82bb-441f-4f83-8772-7fdd6ec8b85c", "display_title": "4DNFIGNXS9HH - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/e5fd82bb-441f-4f83-8772-7fdd6ec8b85c/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bed/", "file_format": "bed", "status": "released", "uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "1 kb binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:26:36.704766+00:00"}}]}, {"title": "GATC binned files", "description": "The files associated with the GATC bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Replicate 2.", "type": "supplementary", "files": [{"accession": "4DNFITU5YI3S", "file_size": 45823338, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1d1bf944-81b3-4265-9dad-2dad4b4bce10/4DNFITU5YI3S.txt.gz", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "1d1bf944-81b3-4265-9dad-2dad4b4bce10", "status": "released", "@id": "/files-processed/4DNFITU5YI3S/", "display_title": "4DNFITU5YI3S.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "6188314930935bdbaca3e3d390b1c9f2", "href": "/files-processed/4DNFITU5YI3S/@@download/4DNFITU5YI3S.txt.gz", "file_type_detailed": "counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:29:35.791704+00:00"}}, {"accession": "4DNFIOXPU732", "file_size": 47697634, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/0bad8b32-7a6a-44a0-be99-0ea77b4a1c91/4DNFIOXPU732.txt.gz", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "0bad8b32-7a6a-44a0-be99-0ea77b4a1c91", "status": "released", "@id": "/files-processed/4DNFIOXPU732/", "display_title": "4DNFIOXPU732.txt.gz", "@type": ["FileProcessed", "File", "Item"], "md5sum": "65878d9dc69cc49bc547b9cef9e15051", "href": "/files-processed/4DNFIOXPU732/@@download/4DNFIOXPU732.txt.gz", "file_type_detailed": "normalized counts (compressed_txt)", "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/compressed_txt/", "file_format": "compressed_txt", "status": "released", "uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "last_modified": {"date_modified": "2021-12-16T08:28:56.729836+00:00"}}, {"accession": "4DNFITK6PNPZ", "file_size": 35503608, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/05021b16-aaf1-4e7f-b3b6-e3d65730689f/4DNFITK6PNPZ.bw", "genome_assembly": "GRCm38", "file_type": "counts", "uuid": "05021b16-aaf1-4e7f-b3b6-e3d65730689f", "status": "released", "higlass_uid": "6bcb18f3-9dd0-4e0d-b9ed-5ee7b6dd33c7", "@id": "/files-processed/4DNFITK6PNPZ/", "display_title": "4DNFITK6PNPZ.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "52052196f1d851317fc3436638302173", "href": "/files-processed/4DNFITK6PNPZ/@@download/4DNFITK6PNPZ.bw", "file_type_detailed": "counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "0b627ae3-f11d-44a9-a0ca-9034515d6312", "display_title": "4DNFITK6PNPZ - counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/0b627ae3-f11d-44a9-a0ca-9034515d6312/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:28:22.884156+00:00"}}, {"accession": "4DNFIP5E35A2", "file_size": 7823064, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/27c743a9-7c5e-4c0a-849f-4cf823d0c5e8/4DNFIP5E35A2.bw", "genome_assembly": "GRCm38", "file_type": "normalized counts", "uuid": "27c743a9-7c5e-4c0a-849f-4cf823d0c5e8", "status": "released", "higlass_uid": "b9ce83f3-b16b-46ba-9eb3-f53ab15239cc", "@id": "/files-processed/4DNFIP5E35A2/", "display_title": "4DNFIP5E35A2.bw", "@type": ["FileProcessed", "File", "Item"], "md5sum": "c051b1e9f35dcb8af6643151b193b8f7", "href": "/files-processed/4DNFIP5E35A2/@@download/4DNFIP5E35A2.bw", "file_type_detailed": "normalized counts (bw)", "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"uuid": "21f2aa79-7d32-4d85-a348-ae03439004a1", "display_title": "4DNFIP5E35A2 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "@id": "/higlass-view-configs/21f2aa79-7d32-4d85-a348-ae03439004a1/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "lab": {"display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "name": "bas-van-steensel-lab", "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"@id": "/file-formats/bw/", "file_format": "bw", "status": "released", "uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "GATC binned files", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2021-12-16T08:27:43.111602+00:00"}}]}], "processed_files": [{"href": "/files-processed/4DNFIXQH3ZSC/@@download/4DNFIXQH3ZSC.bam", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 1185106111, "file_type_detailed": "alignments (bam)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/cfa2cac2-b147-47d6-b46c-c1d993be7fb6/4DNFIXQH3ZSC.bam", "file_classification": "processed file", "accession": "4DNFIXQH3ZSC", "file_type": "alignments", "display_title": "4DNFIXQH3ZSC.bam", "upload_key": "cfa2cac2-b147-47d6-b46c-c1d993be7fb6/4DNFIXQH3ZSC.bam", "status": "released", "genome_assembly": "GRCm38", "md5sum": "be1ff11284b22ab58b862042e0f0ad5d", "uuid": "cfa2cac2-b147-47d6-b46c-c1d993be7fb6", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIXQH3ZSC/", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "display_title": "bam", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:29:39.357373+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}}, {"href": "/files-processed/4DNFIPP3AW72/@@download/4DNFIPP3AW72.bw", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 4093668, "file_type_detailed": "normalized counts (bw)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e14ff29d-e5ba-444b-a8ca-0c1d722d1f46/4DNFIPP3AW72.bw", "file_classification": "processed file", "accession": "4DNFIPP3AW72", "file_type": "normalized counts", "display_title": "4DNFIPP3AW72.bw", "upload_key": "e14ff29d-e5ba-444b-a8ca-0c1d722d1f46/4DNFIPP3AW72.bw", "status": "released", "genome_assembly": "GRCm38", "md5sum": "d8e1e3a7bd89078828f2176a13dc4430", "uuid": "e14ff29d-e5ba-444b-a8ca-0c1d722d1f46", "higlass_uid": "84bd7fce-4672-4782-af38-4403ef97327d", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPP3AW72/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/bw/", "display_title": "bw", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"status": "released", "uuid": "887972d7-ed5c-4d7e-9082-e4a99aaec982", "@id": "/higlass-view-configs/887972d7-ed5c-4d7e-9082-e4a99aaec982/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "display_title": "4DNFIPP3AW72 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:27:33.623405+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}}, {"href": "/files-processed/4DNFIKMRS5KD/@@download/4DNFIKMRS5KD.bed.gz", "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "file_size": 9167, "file_type_detailed": "LADs (bed)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/1924917e-c7e0-4271-ab6c-0ffecc9276d4/4DNFIKMRS5KD.bed.gz", "file_classification": "processed file", "accession": "4DNFIKMRS5KD", "file_type": "LADs", "display_title": "4DNFIKMRS5KD.bed.gz", "upload_key": "1924917e-c7e0-4271-ab6c-0ffecc9276d4/4DNFIKMRS5KD.bed.gz", "status": "released", "genome_assembly": "GRCm38", "md5sum": "4f535363f12b19e60ca86e64fc978caa", "uuid": "1924917e-c7e0-4271-ab6c-0ffecc9276d4", "higlass_uid": "Y_7-QBrWQK-V2cWfRKiyUA", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIKMRS5KD/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@id": "/file-formats/bed/", "display_title": "bed", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "status": "current", "display_title": "Bas van Steensel, NKI", "@id": "/labs/bas-van-steensel-lab/", "name": "bas-van-steensel-lab", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "extra_files": [{"md5sum": "ef16616772d3c7c6c70622f103924735", "use_for": "visualization", "href": "/files-processed/4DNFIKMRS5KD/@@download/4DNFIKMRS5KD.beddb", "file_format": {"uuid": "76dc8c06-67d8-487b-8fc8-d841752a0b60", "status": "released", "file_format": "beddb", "@id": "/file-formats/beddb/", "@type": ["FileFormat", "Item"], "display_title": "beddb", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "static_content": [{"description": "auto_generated_higlass_view_config", "location": "tab:higlass", "content": {"status": "released", "uuid": "87431789-0fa9-4fd1-bfb7-b728588a92f7", "@id": "/higlass-view-configs/87431789-0fa9-4fd1-bfb7-b728588a92f7/", "@type": ["HiglassViewConfig", "UserContent", "Item"], "display_title": "4DNFIKMRS5KD - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2021-12-16T08:26:29.713948+00:00"}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bas van Steensel, NKI", "experiment_type": "DamID-seq", "experiment_bucket": "processed file", "assay_info": "Lmnb1 mouse protein", "dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}}], "external_references": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "experiment_categorizer": {"value": "Lmnb1 mouse protein", "field": "Target", "combined": "Target: Lmnb1 mouse protein"}, "last_modified": {"date_modified": "2019-10-10T20:53:23.154510+00:00"}}], "experimentset_type": "replicate", "other_processed_files": [{"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIPLAIGBT/", "file_format": {"uuid": "8bd6fe41-6af8-43c9-b24a-d74241898f09", "@type": ["FileFormat", "Item"], "display_title": "html", "status": "released", "@id": "/file-formats/html/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "f90802b3-f48b-4457-bd14-bc4a2808975d", "file_type_detailed": "other (html)", "file_size": 5213760, "href": "/files-processed/4DNFIPLAIGBT/@@download/4DNFIPLAIGBT.html", "accession": "4DNFIPLAIGBT", "file_type": "other", "display_title": "4DNFIPLAIGBT.html", "md5sum": "848c0ef04c567029fba630fad943ca77", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f90802b3-f48b-4457-bd14-bc4a2808975d/4DNFIPLAIGBT.html", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2019-10-10T20:50:20.830665+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "Other files - non-binned", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "Other files - non-binned", "description": "Non-bin specific files for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset."}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIJWXRS7F/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "16525ad7-ac81-4cc2-94e7-83580ef18e6f", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 138107, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIJWXRS7F/@@download/4DNFIJWXRS7F.txt.gz", "accession": "4DNFIJWXRS7F", "file_type": "normalized counts", "display_title": "4DNFIJWXRS7F.txt.gz", "md5sum": "e861a44e20a15a90a1f2965d62baf0e6", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/16525ad7-ac81-4cc2-94e7-83580ef18e6f/4DNFIJWXRS7F.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:24.895625+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "250 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIKW7OPQJ/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "6b5a8b1a-2754-4707-9daa-6334db7a8f13", "file_type_detailed": "normalized counts (bw)", "file_size": 195114, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIKW7OPQJ/@@download/4DNFIKW7OPQJ.bw", "accession": "4DNFIKW7OPQJ", "file_type": "normalized counts", "display_title": "4DNFIKW7OPQJ.bw", "higlass_uid": "a7088c89-6c32-4d1c-80c0-956ce20ac520", "md5sum": "260c45baa5ce1e6b2388eb159b1c23ab", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6b5a8b1a-2754-4707-9daa-6334db7a8f13/4DNFIKW7OPQJ.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:09.922167+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "250 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "c97db07e-1d9d-4a62-925e-ef4a7fc9f6db", "display_title": "4DNFIKW7OPQJ - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/c97db07e-1d9d-4a62-925e-ef4a7fc9f6db/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIX646AN1/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "56d538e2-807b-4c18-9956-da5c3b188fa6", "file_type_detailed": "LADs (compressed_txt)", "file_size": 40622, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIX646AN1/@@download/4DNFIX646AN1.txt.gz", "accession": "4DNFIX646AN1", "file_type": "LADs", "display_title": "4DNFIX646AN1.txt.gz", "md5sum": "7a79fd73f94c0c543dad808e4a9a63eb", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/56d538e2-807b-4c18-9956-da5c3b188fa6/4DNFIX646AN1.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:38.649588+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "250 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI32K5L77/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "c1e61283-22b3-4343-ae94-1a905cd9562d", "file_type_detailed": "LADs (bed)", "file_size": 2073, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI32K5L77/@@download/4DNFI32K5L77.bed.gz", "accession": "4DNFI32K5L77", "file_type": "LADs", "display_title": "4DNFI32K5L77.bed.gz", "higlass_uid": "PYTeePInT7W-Wfw2VlQBkA", "md5sum": "6642745845d48118774add37948b06a0", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/c1e61283-22b3-4343-ae94-1a905cd9562d/4DNFI32K5L77.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:04.566972+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "250 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "acc6bd55-56f0-432a-8f6c-11ce7862febf", "display_title": "4DNFI32K5L77 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/acc6bd55-56f0-432a-8f6c-11ce7862febf/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "250 kb binned files", "description": "The files associated with the 250 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (250 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIKW7OPQJ, 4DNFI32K5L77", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "02c5b051-0c74-44c0-b690-d710c11fdfce", "@id": "/higlass-view-configs/02c5b051-0c74-44c0-b690-d710c11fdfce/", "display_title": "4DNESYPMROEJ - 250 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:04.738831+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIO4UJSD2/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "33dceec0-a368-4c11-bd4d-6030cf25de0c", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 358816, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIO4UJSD2/@@download/4DNFIO4UJSD2.txt.gz", "accession": "4DNFIO4UJSD2", "file_type": "normalized counts", "display_title": "4DNFIO4UJSD2.txt.gz", "md5sum": "24aa5cf1414b74164e9b68e02d6af35a", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/33dceec0-a368-4c11-bd4d-6030cf25de0c/4DNFIO4UJSD2.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:27.991939+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "100 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIM59XVB7/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "bbfdf083-3384-419a-beb7-d64a4daf6e36", "file_type_detailed": "normalized counts (bw)", "file_size": 435801, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIM59XVB7/@@download/4DNFIM59XVB7.bw", "accession": "4DNFIM59XVB7", "file_type": "normalized counts", "display_title": "4DNFIM59XVB7.bw", "higlass_uid": "8ccc8179-daaf-4ecb-baa9-d5c019b56795", "md5sum": "ac324178839b9bb43fe4d44995157d14", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bbfdf083-3384-419a-beb7-d64a4daf6e36/4DNFIM59XVB7.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:13.051162+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "100 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "d9117fa6-5b9c-410b-a8fd-63594536bc8d", "display_title": "4DNFIM59XVB7 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/d9117fa6-5b9c-410b-a8fd-63594536bc8d/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIV5KE192/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "56935add-0f50-4f06-9864-fd27d890f599", "file_type_detailed": "LADs (compressed_txt)", "file_size": 112816, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIV5KE192/@@download/4DNFIV5KE192.txt.gz", "accession": "4DNFIV5KE192", "file_type": "LADs", "display_title": "4DNFIV5KE192.txt.gz", "md5sum": "669d4ecef220995eb377b20651e3cbb0", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/56935add-0f50-4f06-9864-fd27d890f599/4DNFIV5KE192.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:41.674992+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "100 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIURDOOPA/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "a91e7afe-be5f-44f7-b16a-e2fbcc5b3517", "file_type_detailed": "LADs (bed)", "file_size": 3256, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIURDOOPA/@@download/4DNFIURDOOPA.bed.gz", "accession": "4DNFIURDOOPA", "file_type": "LADs", "display_title": "4DNFIURDOOPA.bed.gz", "higlass_uid": "YIDzs9O-Qt2VkMy_4Nup_Q", "md5sum": "e0b5a58848981c937f4d56bcbee71e6b", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a91e7afe-be5f-44f7-b16a-e2fbcc5b3517/4DNFIURDOOPA.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:07.787140+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "100 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "350e2919-fbfe-4539-a158-e3aa8b8f7094", "display_title": "4DNFIURDOOPA - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/350e2919-fbfe-4539-a158-e3aa8b8f7094/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "100 kb binned files", "description": "The files associated with the 100 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (100 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIM59XVB7, 4DNFIURDOOPA", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "fc0a681c-4b6f-4d6e-824d-3109ce4e2e02", "@id": "/higlass-view-configs/fc0a681c-4b6f-4d6e-824d-3109ce4e2e02/", "display_title": "4DNESYPMROEJ - 100 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:05.927718+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIO4D98QD/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "b1a78306-94bb-46f2-9a35-7e6411a53af3", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 452318, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIO4D98QD/@@download/4DNFIO4D98QD.txt.gz", "accession": "4DNFIO4D98QD", "file_type": "normalized counts", "display_title": "4DNFIO4D98QD.txt.gz", "md5sum": "6bcfa2e29afd509f77235d2d6053b9ef", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/b1a78306-94bb-46f2-9a35-7e6411a53af3/4DNFIO4D98QD.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:31.151344+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "80 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI4ZWFJ5B/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "c88ed6ce-959e-4879-ad80-2d0d73e65490", "file_type_detailed": "normalized counts (bw)", "file_size": 531241, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI4ZWFJ5B/@@download/4DNFI4ZWFJ5B.bw", "accession": "4DNFI4ZWFJ5B", "file_type": "normalized counts", "display_title": "4DNFI4ZWFJ5B.bw", "higlass_uid": "73e1d016-5a4a-4c52-8711-5deec4aebb2b", "md5sum": "3c1fbbef34756e1e439dfffb255a76f8", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/c88ed6ce-959e-4879-ad80-2d0d73e65490/4DNFI4ZWFJ5B.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:16.190944+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "80 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "8976f4cb-7ce1-4ae7-abc0-1e0727e63763", "display_title": "4DNFI4ZWFJ5B - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/8976f4cb-7ce1-4ae7-abc0-1e0727e63763/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFISL2WY5O/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "382b6e6f-d1df-4c55-88d4-d0aa37a8a460", "file_type_detailed": "LADs (compressed_txt)", "file_size": 143479, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFISL2WY5O/@@download/4DNFISL2WY5O.txt.gz", "accession": "4DNFISL2WY5O", "file_type": "LADs", "display_title": "4DNFISL2WY5O.txt.gz", "md5sum": "33fad4d6ed08ace737116f98e4cc7e8f", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/382b6e6f-d1df-4c55-88d4-d0aa37a8a460/4DNFISL2WY5O.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:45.019276+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "80 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI4INXOU3/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "a84f6a8a-2d17-4ab6-9caa-b033e3705871", "file_type_detailed": "LADs (bed)", "file_size": 3762, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI4INXOU3/@@download/4DNFI4INXOU3.bed.gz", "accession": "4DNFI4INXOU3", "file_type": "LADs", "display_title": "4DNFI4INXOU3.bed.gz", "higlass_uid": "aExt0FXPQsWGdRD653jkAg", "md5sum": "1b656396506e04449499b331597026fb", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a84f6a8a-2d17-4ab6-9caa-b033e3705871/4DNFI4INXOU3.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:11.726053+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "80 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "656961a6-793e-43e3-9dee-2ec0d3f65bcb", "display_title": "4DNFI4INXOU3 - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/656961a6-793e-43e3-9dee-2ec0d3f65bcb/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "80 kb binned files", "description": "The files associated with the 80 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (80 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFI4ZWFJ5B, 4DNFI4INXOU3", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "a232ed9b-effe-4e20-9216-c2e5eb54329f", "@id": "/higlass-view-configs/a232ed9b-effe-4e20-9216-c2e5eb54329f/", "display_title": "4DNESYPMROEJ - 80 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:07.167323+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFI8E9L66T/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "9ea70123-d519-497f-8ffa-e813e2b5ee19", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 714428, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI8E9L66T/@@download/4DNFI8E9L66T.txt.gz", "accession": "4DNFI8E9L66T", "file_type": "normalized counts", "display_title": "4DNFI8E9L66T.txt.gz", "md5sum": "4620546e7c58178aeaaf48e4c6af2c22", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/9ea70123-d519-497f-8ffa-e813e2b5ee19/4DNFI8E9L66T.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:34.510384+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "50 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIM2EG6N9/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "218b2d00-a607-4b45-81be-b1893c431679", "file_type_detailed": "normalized counts (bw)", "file_size": 828694, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIM2EG6N9/@@download/4DNFIM2EG6N9.bw", "accession": "4DNFIM2EG6N9", "file_type": "normalized counts", "display_title": "4DNFIM2EG6N9.bw", "higlass_uid": "3fcea505-668c-48a0-b810-24742dab9c84", "md5sum": "002513cf1cf572caf58cf6f55d36d01d", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/218b2d00-a607-4b45-81be-b1893c431679/4DNFIM2EG6N9.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:19.630326+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "50 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "9b954078-d79d-450f-8220-74a59c41e44d", "display_title": "4DNFIM2EG6N9 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/9b954078-d79d-450f-8220-74a59c41e44d/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI2UKARZX/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "6f4c3f35-433e-4e46-ac03-05d923dc2ac3", "file_type_detailed": "LADs (compressed_txt)", "file_size": 221950, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI2UKARZX/@@download/4DNFI2UKARZX.txt.gz", "accession": "4DNFI2UKARZX", "file_type": "LADs", "display_title": "4DNFI2UKARZX.txt.gz", "md5sum": "731617765525b0278c3e8e2e1b64837c", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/6f4c3f35-433e-4e46-ac03-05d923dc2ac3/4DNFI2UKARZX.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:48.416310+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "50 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIT58RVOB/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "4d3e3da7-d16e-4551-9eee-2bbfe1f5153b", "file_type_detailed": "LADs (bed)", "file_size": 4369, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIT58RVOB/@@download/4DNFIT58RVOB.bed.gz", "accession": "4DNFIT58RVOB", "file_type": "LADs", "display_title": "4DNFIT58RVOB.bed.gz", "higlass_uid": "RG5mndrFRlmDsJOtgRywhg", "md5sum": "c58621f755cea2390ebcd8a0c5a0c7b7", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4d3e3da7-d16e-4551-9eee-2bbfe1f5153b/4DNFIT58RVOB.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:14.927572+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "50 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "d3c42f17-6b82-4ca9-9885-7f7796c35741", "display_title": "4DNFIT58RVOB - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/d3c42f17-6b82-4ca9-9885-7f7796c35741/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "50 kb binned files", "description": "The files associated with the 50 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (50 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIM2EG6N9, 4DNFIT58RVOB", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "931fa205-10e3-4d76-8937-77ac0a8c0299", "@id": "/higlass-view-configs/931fa205-10e3-4d76-8937-77ac0a8c0299/", "display_title": "4DNESYPMROEJ - 50 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:08.435588+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFI2O2HS9B/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "e535b52e-45e1-4aed-b6fc-bb3045521ea3", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 1433214, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI2O2HS9B/@@download/4DNFI2O2HS9B.txt.gz", "accession": "4DNFI2O2HS9B", "file_type": "normalized counts", "display_title": "4DNFI2O2HS9B.txt.gz", "md5sum": "8ce1b155f01f9e882c865d5a2db98517", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/e535b52e-45e1-4aed-b6fc-bb3045521ea3/4DNFI2O2HS9B.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:37.735013+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "25 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIBYC1M2R/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "4a55db98-481c-4354-96aa-7c677ebf75d3", "file_type_detailed": "normalized counts (bw)", "file_size": 1622103, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIBYC1M2R/@@download/4DNFIBYC1M2R.bw", "accession": "4DNFIBYC1M2R", "file_type": "normalized counts", "display_title": "4DNFIBYC1M2R.bw", "higlass_uid": "da3b62e5-44a9-419b-85f2-185f5760d939", "md5sum": "6b0cb944861ba66cba25c2be92ab5b74", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4a55db98-481c-4354-96aa-7c677ebf75d3/4DNFIBYC1M2R.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:22.906582+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "25 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "14c86985-d4ed-4d8a-8411-4a10b6bbb49e", "display_title": "4DNFIBYC1M2R - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/14c86985-d4ed-4d8a-8411-4a10b6bbb49e/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIABOMCLH/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "4216c3ef-833e-4299-9753-b607279ecf53", "file_type_detailed": "LADs (compressed_txt)", "file_size": 455712, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIABOMCLH/@@download/4DNFIABOMCLH.txt.gz", "accession": "4DNFIABOMCLH", "file_type": "LADs", "display_title": "4DNFIABOMCLH.txt.gz", "md5sum": "1c748c88b2a1dcf097394eeeb6211306", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4216c3ef-833e-4299-9753-b607279ecf53/4DNFIABOMCLH.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:51.700282+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "25 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI16AGJVE/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "15f294a5-0a2a-41fb-ac3a-e5d25bca12f2", "file_type_detailed": "LADs (bed)", "file_size": 5953, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI16AGJVE/@@download/4DNFI16AGJVE.bed.gz", "accession": "4DNFI16AGJVE", "file_type": "LADs", "display_title": "4DNFI16AGJVE.bed.gz", "higlass_uid": "JwfAtjCBTCqR2jMwpOt90w", "md5sum": "ab5088a60cbbcaac5a3b4dd2183035fc", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/15f294a5-0a2a-41fb-ac3a-e5d25bca12f2/4DNFI16AGJVE.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:18.127788+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "25 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "fe2c38b4-26db-46f9-b37b-5b5c474f3d5a", "display_title": "4DNFI16AGJVE - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/fe2c38b4-26db-46f9-b37b-5b5c474f3d5a/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "25 kb binned files", "description": "The files associated with the 25 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (25 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIBYC1M2R, 4DNFI16AGJVE", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "0783bfc8-7598-4618-91d2-3728fa5e8bd5", "@id": "/higlass-view-configs/0783bfc8-7598-4618-91d2-3728fa5e8bd5/", "display_title": "4DNESYPMROEJ - 25 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:09.647368+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFILCWKC2V/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "989b73d2-7754-4481-9fc6-afc28f7b8193", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 1794357, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFILCWKC2V/@@download/4DNFILCWKC2V.txt.gz", "accession": "4DNFILCWKC2V", "file_type": "normalized counts", "display_title": "4DNFILCWKC2V.txt.gz", "md5sum": "8dc854b2a61d1200ca0800fd01040f28", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/989b73d2-7754-4481-9fc6-afc28f7b8193/4DNFILCWKC2V.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:40.740577+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "20 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIIBQ4CRX/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "67fc3392-f33c-4376-bec6-6045a7cd5135", "file_type_detailed": "normalized counts (bw)", "file_size": 1983800, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIIBQ4CRX/@@download/4DNFIIBQ4CRX.bw", "accession": "4DNFIIBQ4CRX", "file_type": "normalized counts", "display_title": "4DNFIIBQ4CRX.bw", "higlass_uid": "da7b18e9-e8dc-49db-b030-d91300a26805", "md5sum": "6322b428d4f79bd53e811f02b8b21338", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/67fc3392-f33c-4376-bec6-6045a7cd5135/4DNFIIBQ4CRX.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:26.457492+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "20 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "e156bb4b-88a4-4fcf-a495-4f6805ba1e62", "display_title": "4DNFIIBQ4CRX - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/e156bb4b-88a4-4fcf-a495-4f6805ba1e62/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFICOY7AE2/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "0776811c-aef4-4875-a64a-b9e6ad77e18c", "file_type_detailed": "LADs (compressed_txt)", "file_size": 571948, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFICOY7AE2/@@download/4DNFICOY7AE2.txt.gz", "accession": "4DNFICOY7AE2", "file_type": "LADs", "display_title": "4DNFICOY7AE2.txt.gz", "md5sum": "bae55603747a2ce92b0f636367d579e5", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/0776811c-aef4-4875-a64a-b9e6ad77e18c/4DNFICOY7AE2.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:54.831830+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "20 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIR9PSIGZ/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "654d87b6-0928-4b04-b801-fdc03b2a05ec", "file_type_detailed": "LADs (bed)", "file_size": 6700, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIR9PSIGZ/@@download/4DNFIR9PSIGZ.bed.gz", "accession": "4DNFIR9PSIGZ", "file_type": "LADs", "display_title": "4DNFIR9PSIGZ.bed.gz", "higlass_uid": "TwZY24q0QfGRdxv_4g8ZyA", "md5sum": "26c04a7e55d56912c693576dfcc3365f", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/654d87b6-0928-4b04-b801-fdc03b2a05ec/4DNFIR9PSIGZ.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:21.657639+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "20 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "6de01d4b-8b4b-4f3e-bc50-b7bac12c9446", "display_title": "4DNFIR9PSIGZ - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/6de01d4b-8b4b-4f3e-bc50-b7bac12c9446/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "20 kb binned files", "description": "The files associated with the 20 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (20 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIIBQ4CRX, 4DNFIR9PSIGZ", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "d0ea2990-8fdb-464c-806b-f70d33093573", "@id": "/higlass-view-configs/d0ea2990-8fdb-464c-806b-f70d33093573/", "display_title": "4DNESYPMROEJ - 20 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:10.817940+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIM8F7DX4/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "f7a67a97-309d-42e0-9459-cf083a641853", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 3534892, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIM8F7DX4/@@download/4DNFIM8F7DX4.txt.gz", "accession": "4DNFIM8F7DX4", "file_type": "normalized counts", "display_title": "4DNFIM8F7DX4.txt.gz", "md5sum": "7f00fc5e09d55b1d3486b4d044a3b716", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/f7a67a97-309d-42e0-9459-cf083a641853/4DNFIM8F7DX4.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:43.519605+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "10 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIUGMQA48/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "44a57fbd-2d6a-48ff-b746-ce03f52c5543", "file_type_detailed": "normalized counts (bw)", "file_size": 2514015, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIUGMQA48/@@download/4DNFIUGMQA48.bw", "accession": "4DNFIUGMQA48", "file_type": "normalized counts", "display_title": "4DNFIUGMQA48.bw", "higlass_uid": "a8f943d1-b4ed-4552-bca2-181495f2b4c9", "md5sum": "4b9ae1522f9c938508c48d1419f53b76", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/44a57fbd-2d6a-48ff-b746-ce03f52c5543/4DNFIUGMQA48.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:29.631157+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "10 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "1bdf2df2-1eb3-4563-9b28-ca6fd75e3382", "display_title": "4DNFIUGMQA48 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/1bdf2df2-1eb3-4563-9b28-ca6fd75e3382/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI1BQQ2AR/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "d306021e-c651-4f7a-b71a-1f2aeba62c90", "file_type_detailed": "LADs (compressed_txt)", "file_size": 1191796, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI1BQQ2AR/@@download/4DNFI1BQQ2AR.txt.gz", "accession": "4DNFI1BQQ2AR", "file_type": "LADs", "display_title": "4DNFI1BQQ2AR.txt.gz", "md5sum": "807368b86eb24fa4144727120e61fafc", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d306021e-c651-4f7a-b71a-1f2aeba62c90/4DNFI1BQQ2AR.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:57.916242+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "10 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIVPTGVKK/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "12e375a5-e8cb-43ae-a9c7-921b7ad4750b", "file_type_detailed": "LADs (bed)", "file_size": 8844, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIVPTGVKK/@@download/4DNFIVPTGVKK.bed.gz", "accession": "4DNFIVPTGVKK", "file_type": "LADs", "display_title": "4DNFIVPTGVKK.bed.gz", "higlass_uid": "WLHFutdbTqyzwAsi9JwITg", "md5sum": "226ca4c1b6d81d325e6d511bcb37cb84", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/12e375a5-e8cb-43ae-a9c7-921b7ad4750b/4DNFIVPTGVKK.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:25.144883+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "10 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "5f5a7654-1041-4d36-bd61-72c1c74d2bd5", "display_title": "4DNFIVPTGVKK - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/5f5a7654-1041-4d36-bd61-72c1c74d2bd5/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "10 kb binned files", "description": "The files associated with the 10 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (10 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIUGMQA48, 4DNFIVPTGVKK", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "051b27c2-d844-48dc-9e6e-ab713f234a4e", "@id": "/higlass-view-configs/051b27c2-d844-48dc-9e6e-ab713f234a4e/", "display_title": "4DNESYPMROEJ - 10 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:11.935413+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIL2D578W/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "c821421e-aa36-416e-9b49-49e5dc399068", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 6253034, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIL2D578W/@@download/4DNFIL2D578W.txt.gz", "accession": "4DNFIL2D578W", "file_type": "normalized counts", "display_title": "4DNFIL2D578W.txt.gz", "md5sum": "b6d45f5d73a3a4f89419445172e02b99", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/c821421e-aa36-416e-9b49-49e5dc399068/4DNFIL2D578W.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:46.498155+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "Additional 5 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIJ9CN7BQ/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "2d14d8b9-5877-487f-b161-af84ba98b7d2", "file_type_detailed": "LADs (compressed_txt)", "file_size": 2452272, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIJ9CN7BQ/@@download/4DNFIJ9CN7BQ.txt.gz", "accession": "4DNFIJ9CN7BQ", "file_type": "LADs", "display_title": "4DNFIJ9CN7BQ.txt.gz", "md5sum": "cebb03f0a4723e751d4afe8c557a6d37", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/2d14d8b9-5877-487f-b161-af84ba98b7d2/4DNFIJ9CN7BQ.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:01.157616+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "Additional 5 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "Additional 5 kb binned files", "description": "Additional files associated with the 5 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (Additional 5 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIUYWH82U, 4DNFIEA2EJGZ", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "5a81e89a-79ec-4de1-aa06-dbb10bbf1a36", "@id": "/higlass-view-configs/5a81e89a-79ec-4de1-aa06-dbb10bbf1a36/", "display_title": "4DNESYPMROEJ - Additional 5 kb binned files", "last_modified": {"date_modified": "2020-10-30T17:14:29.273202+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIONA55OH/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "5c29a136-7fb2-472e-960d-6464ed9e7170", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 11859930, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIONA55OH/@@download/4DNFIONA55OH.txt.gz", "accession": "4DNFIONA55OH", "file_type": "normalized counts", "display_title": "4DNFIONA55OH.txt.gz", "md5sum": "32ef734ffc76e8cb6665a99e257d686c", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/5c29a136-7fb2-472e-960d-6464ed9e7170/4DNFIONA55OH.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:49.720641+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "2 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFILHU9XP4/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "4b617298-e68b-459e-94fb-27c1e5908952", "file_type_detailed": "normalized counts (bw)", "file_size": 7764049, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFILHU9XP4/@@download/4DNFILHU9XP4.bw", "accession": "4DNFILHU9XP4", "file_type": "normalized counts", "display_title": "4DNFILHU9XP4.bw", "higlass_uid": "594f3862-ffe9-492c-b4f4-49af5a440f99", "md5sum": "8690c5feeb3fb29d8cd8b1832bc54f75", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4b617298-e68b-459e-94fb-27c1e5908952/4DNFILHU9XP4.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:35.809914+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "2 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "ee28c85d-7990-4e2f-b7bd-0fcf5b8f860d", "display_title": "4DNFILHU9XP4 - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/ee28c85d-7990-4e2f-b7bd-0fcf5b8f860d/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFI7TAUKHY/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "00d4bff2-2ec5-4dc7-af5a-39560ac6d22c", "file_type_detailed": "LADs (compressed_txt)", "file_size": 6291946, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI7TAUKHY/@@download/4DNFI7TAUKHY.txt.gz", "accession": "4DNFI7TAUKHY", "file_type": "LADs", "display_title": "4DNFI7TAUKHY.txt.gz", "md5sum": "6b91c15fd42a045aa58ff38467c463c4", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/00d4bff2-2ec5-4dc7-af5a-39560ac6d22c/4DNFI7TAUKHY.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:04.157937+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "2 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIJ95KMRW/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "4880fe5c-3a92-4be7-933c-809137edc34f", "file_type_detailed": "LADs (bed)", "file_size": 9035, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIJ95KMRW/@@download/4DNFIJ95KMRW.bed.gz", "accession": "4DNFIJ95KMRW", "file_type": "LADs", "display_title": "4DNFIJ95KMRW.bed.gz", "higlass_uid": "GpOOfMfbSeeGQusZ3EWg7Q", "md5sum": "7e49f79165ccdb43fe476c18784c66cb", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/4880fe5c-3a92-4be7-933c-809137edc34f/4DNFIJ95KMRW.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:32.086914+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "2 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "94af8029-0d15-4841-af90-477631145414", "display_title": "4DNFIJ95KMRW - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/94af8029-0d15-4841-af90-477631145414/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "2 kb binned files", "description": "The files associated with the 2 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (2 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFILHU9XP4, 4DNFIJ95KMRW", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "1da838e2-97e0-4b26-86ed-9ea1fe9822f9", "@id": "/higlass-view-configs/1da838e2-97e0-4b26-86ed-9ea1fe9822f9/", "display_title": "4DNESYPMROEJ - 2 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:13.121049+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFI68ZHIZQ/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "bf3e67e3-f6e8-4678-a642-8d94224f5347", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 18825486, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFI68ZHIZQ/@@download/4DNFI68ZHIZQ.txt.gz", "accession": "4DNFI68ZHIZQ", "file_type": "normalized counts", "display_title": "4DNFI68ZHIZQ.txt.gz", "md5sum": "773fc8d2187f6d95bcbd669a264270fa", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/bf3e67e3-f6e8-4678-a642-8d94224f5347/4DNFI68ZHIZQ.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:52.614591+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "1 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIVH8H8GF/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "3ebc2c92-b2a3-4be0-8ccd-e14249a8c653", "file_type_detailed": "normalized counts (bw)", "file_size": 10586479, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIVH8H8GF/@@download/4DNFIVH8H8GF.bw", "accession": "4DNFIVH8H8GF", "file_type": "normalized counts", "display_title": "4DNFIVH8H8GF.bw", "higlass_uid": "62bd722a-815e-49a2-b5a4-a1188f96fc9e", "md5sum": "0147f7471bde9fa8fe03edd567a60ca7", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/3ebc2c92-b2a3-4be0-8ccd-e14249a8c653/4DNFIVH8H8GF.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:39.150999+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "1 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "0d62f860-a02c-4eeb-aa39-2dae8ed9c15b", "display_title": "4DNFIVH8H8GF - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/0d62f860-a02c-4eeb-aa39-2dae8ed9c15b/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIS5DJKEC/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "32cd37e9-3d09-4399-bce9-9a9cdc7ce6c9", "file_type_detailed": "LADs (compressed_txt)", "file_size": 12751322, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIS5DJKEC/@@download/4DNFIS5DJKEC.txt.gz", "accession": "4DNFIS5DJKEC", "file_type": "LADs", "display_title": "4DNFIS5DJKEC.txt.gz", "md5sum": "2b87e4917981a7505d1bc46a781ac87a", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/32cd37e9-3d09-4399-bce9-9a9cdc7ce6c9/4DNFIS5DJKEC.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:07.024220+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "1 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFICQECYLB/", "file_format": {"uuid": "69f6d609-f2ac-4c82-9472-1a13331b5ce9", "@type": ["FileFormat", "Item"], "display_title": "bed", "status": "released", "@id": "/file-formats/bed/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "d702e945-4f84-4467-b9e7-882733d1b39c", "file_type_detailed": "LADs (bed)", "file_size": 8515, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFICQECYLB/@@download/4DNFICQECYLB.bed.gz", "accession": "4DNFICQECYLB", "file_type": "LADs", "display_title": "4DNFICQECYLB.bed.gz", "higlass_uid": "BTFPAQ01Q1y2JLTQvkHA6A", "md5sum": "589f076b77143fbe0df6ed5eadd73094", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d702e945-4f84-4467-b9e7-882733d1b39c/4DNFICQECYLB.bed.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:26:35.624015+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "1 kb binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "039e9f82-06f3-41c6-8b72-ee6115b52ecd", "display_title": "4DNFICQECYLB - LADs for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/039e9f82-06f3-41c6-8b72-ee6115b52ecd/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "1 kb binned files", "description": "The files associated with the 1 kb bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (1 kb binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIVH8H8GF, 4DNFICQECYLB", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "a1d4296c-83fd-4a77-9dc0-95f6a9bd7a1d", "@id": "/higlass-view-configs/a1d4296c-83fd-4a77-9dc0-95f6a9bd7a1d/", "display_title": "4DNESYPMROEJ - 1 kb binned files", "last_modified": {"date_modified": "2021-12-17T06:06:14.453403+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}, {"type": "supplementary", "files": [{"status": "released", "@id": "/files-processed/4DNFIWWOV8GZ/", "file_format": {"uuid": "dba26778-f40a-4561-a552-65539702ded4", "@type": ["FileFormat", "Item"], "display_title": "compressed_txt", "status": "released", "@id": "/file-formats/compressed_txt/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "13a6e546-d47f-40d5-9c12-c5d2b4d76945", "file_type_detailed": "normalized counts (compressed_txt)", "file_size": 49833863, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIWWOV8GZ/@@download/4DNFIWWOV8GZ.txt.gz", "accession": "4DNFIWWOV8GZ", "file_type": "normalized counts", "display_title": "4DNFIWWOV8GZ.txt.gz", "md5sum": "435adf80dd3a4d14b05fb13aed6d7c47", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/13a6e546-d47f-40d5-9c12-c5d2b4d76945/4DNFIWWOV8GZ.txt.gz", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:28:55.829307+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "GATC binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/files-processed/4DNFIIRO3UOS/", "file_format": {"uuid": "d1311111-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "display_title": "bw", "status": "released", "@id": "/file-formats/bw/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "uuid": "dc0ef39c-2c87-45d2-82fa-e835a4d91959", "file_type_detailed": "normalized counts (bw)", "file_size": 9433785, "notes_to_tsv": ["This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available."], "href": "/files-processed/4DNFIIRO3UOS/@@download/4DNFIIRO3UOS.bw", "accession": "4DNFIIRO3UOS", "file_type": "normalized counts", "display_title": "4DNFIIRO3UOS.bw", "higlass_uid": "8fdc5d17-3a81-41d8-ba26-f035fd54c189", "md5sum": "5e832cd14890b90c52371bf9adf2ae1c", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/dc0ef39c-2c87-45d2-82fa-e835a4d91959/4DNFIIRO3UOS.bw", "@type": ["FileProcessed", "File", "Item"], "genome_assembly": "GRCm38", "lab": {"status": "current", "@id": "/labs/bas-van-steensel-lab/", "display_title": "Bas van Steensel, NKI", "name": "bas-van-steensel-lab", "uuid": "6343d57a-213e-4ac7-89ec-8b5e74c21bd2", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.6343d57a-213e-4ac7-89ec-8b5e74c21bd2"]}}, "last_modified": {"date_modified": "2021-12-16T08:27:42.138562+00:00"}, "track_and_facet_info": {"dataset": "DamID-seq on F121-9 cells (2018-10-22)", "condition": "LaminB1-Dam", "experimental_lab": "Bas van Steensel, NKI", "replicate_info": "merged replicates", "experiment_bucket": "GATC binned files", "experiment_type": "DamID-seq", "assay_info": "Lmnb1 mouse protein", "biosource_name": "F121-9-CASTx129 (Tier 2)", "lab_name": "Bas van Steensel, NKI", "track_title": "normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein"}, "static_content": [{"location": "tab:higlass", "description": "auto_generated_higlass_view_config", "content": {"uuid": "9b956d45-6870-45df-8fac-071fd30a5f82", "display_title": "4DNFIIRO3UOS - normalized counts for F121-9-CASTx129 (Tier 2) DamID-seq Lmnb1 mouse protein", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "@id": "/higlass-view-configs/9b956d45-6870-45df-8fac-071fd30a5f82/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "title": "GATC binned files", "description": "The files associated with the GATC bin size processing of data for the DAM ID seq F121-9-CASTx129 Lamin-B1 Dataset.", "higlass_view_config": {"description": "Supplementary Files (GATC binned files) for 4DNESYPMROEJ (LaminB1 DamID of f1219castx129T2 Tier 2 cells \u2013 cells were transduced with virus expressing Dam-LaminB1, gDNA was harvested after 4 days and processed for DamID-seq): 4DNFIIRO3UOS", "status": "released", "@type": ["HiglassViewConfig", "UserContent", "Item"], "uuid": "e38b6cf4-d66d-49d9-8511-2e01d641f51b", "@id": "/higlass-view-configs/e38b6cf4-d66d-49d9-8511-2e01d641f51b/", "display_title": "4DNESYPMROEJ - GATC binned files", "last_modified": {"date_modified": "2021-12-17T06:06:15.577654+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.7677f8a8-79d2-4cff-ab0a-a967a2a68e39"]}}}], "@id": "/experiment-set-replicates/4DNESYPMROEJ/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "d3f552b2-deeb-4415-a6fe-93f5431ca9b1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNESYPMROEJ", "external_references": [], "pubs_using": [], "publications_of_set": [], "number_of_experiments": 2, "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/biosamples/4DNBS2PUM1JI/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample receives gold status for being a 4DN Tier 1 or Tier 2 cell line that follows the approved SOP and contains all of the pertinent metadata information as required by the 4DN Samples working group."], "badge": {"commendation": "Gold Biosample", "warning": null, "uuid": "6c2b7409-4478-4e15-aabc-1a0df6b883e9", "@id": "/badges/gold-biosample/", "badge_icon": "/static/img/badges/biosample-badge-gold-star.svg", "description": "Gold biosample"}}}, {"parent": "/biosamples/4DNBSSHJYUZT/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample receives gold status for being a 4DN Tier 1 or Tier 2 cell line that follows the approved SOP and contains all of the pertinent metadata information as required by the 4DN Samples working group."], "badge": {"commendation": "Gold Biosample", "warning": null, "uuid": "6c2b7409-4478-4e15-aabc-1a0df6b883e9", "@id": "/badges/gold-biosample/", "badge_icon": "/static/img/badges/biosample-badge-gold-star.svg", "description": "Gold biosample"}}}]}, "validation-errors": []}