ExperimentSetReplicate

ExperimentSet4DNESMBA9T3L
released

ATAC-seq on HFFc6 with 2 biological replicates

   May 25th, 2018 at 7:07pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Note: This Experiment Set Supersedes 4DNESGZ9A3FG  


This experiment set supercedes 4DNESGZ9A3FG because a new biological replicate was added.

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

11 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXF6RQQ27
Bio Rep 1, Tec Rep 1
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIZ114HJK
60.52%
0.86
0.88
24.37m
Experiment
4DNEXQUCGLW9
Bio Rep 1, Tec Rep 2
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIJC3CMMP
63.45%
0.87
0.89
19.76m
Experiment
4DNEXJGIUGRH
Bio Rep 1, Tec Rep 3
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFINEISP8C
61.1%
0.85
0.86
24.62m
Experiment
4DNEXBYHX8E4
Bio Rep 1, Tec Rep 4
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFISXAP8JT
55.81%
0.88
0.89
16.52m
Experiment
4DNEXMHGYBOJ
Bio Rep 2, Tec Rep 4
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFI7K4V7MV
23.06%
0.81
0.82
33.6m
Experiment
4DNEXN7N1U82
Bio Rep 2, Tec Rep 3
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIQ84JX9O
24.05%
0.8
0.81
36.66m
Experiment
4DNEX6C42Q5B
Bio Rep 2, Tec Rep 2
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIEZBX3YA
44.81%
0.22
0.25
10.99m
Experiment
4DNEX97A5KCP
Bio Rep 2, Tec Rep 1
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIROMMCG8
39.62%
0.83
0.84
28.26m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESMBA9T3L
Multiple Experiments
File
Peaks (bigbed)
4DNFI4R7BEGM
275.89k
1.03
1.05
0.54