{"lab": {"status": "current", "@type": ["Lab", "Item"], "correspondence": [{"contact_email": "YmlyZW5AdWNzZC5lZHU=", "@id": "/users/e3159ffc-a5a9-43a1-8cfa-90b776c39788/", "display_title": "Bing Ren"}], "title": "Bing Ren, UCSD", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "award": {"@id": "/awards/1U54DK107977-01/", "uuid": "4871e338-b07d-4665-a00a-357648e5bad6", "description": "NOFIC: The complete sequencing of the human genome has provided an unprecedented opportunity for the study of the structure and function of the human genome. While our genome has historically been viewed as a linear sequence of bases, it has progressively become clear that this is an inadequate way to represent our genetic information. Notably, research over the last 30 years has begun to shed light on the fact that the higher-order, 3-dimensional organization of our genome plays a critical role in the interpretation of the genetic information encoded in our genome. The structure of our genome in the nucleus has been clearly demonstrated to play influential roles in diverse nuclear processes including DNA replication and gene expression. Despite this, our understanding of the structure of our genome within the nucleus remains incomplete. The reasons for this include limitations in the resolution and throughput of existing tools in chromatin topology mapping, a scarcity of the analytical tools for studying genome structure datasets, and the difficulty to relate the nuclear structure to function. Due to recent advancements in molecular methods based on high-throughput DNA sequencing, single cell analytical approaches, and high-resolution microscopy, the time for breaking through these previous limitations has come. We will establish a highly collaborative, innovative team in order to develop the tools necessary to transform our understanding of chromatin architecture and function in mammalian cells. We will begin by developing datasets that establish gold standards for the study of nuclear structure and function using genetic, biochemical and imaging approaches. We will optimize current existing technologies for mapping genome wide chromatin interactions, while also developing novel, complementary approaches for studying chromatin structure. We will also develop innovative analytical methods to interpret the chromatin structural data, unraveling principles of structural- and temporal- chromatin organization. Our highly collaborative team will draw on the diverse experiences of its members to provide a synergistic environment to push the limits of our understanding of nuclear structure. We expect that the tools and datasets generated through the proposed research will dramatically advance our understanding of the chromatin structure and function in human cells.", "name": "1U54DK107977-01", "center_title": "NOFIC - Ren", "project": "4DN", "display_title": "SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH", "@type": ["Award", "Item"], "status": "current", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "badges": [{"badge": {"badge_icon": "/static/img/badges/replicates-orange-circle.svg", "description": "Issues with replicate numbers", "@id": "/badges/replicate-numbers/", "uuid": "24a64a84-3c33-4d76-aaf2-e5ef45eff347", "title": "Replicate Numbers", "@type": ["Badge", "Item"], "status": "released", "warning": "Replicate Numbers", "display_title": "Replicate Numbers", "badge_classification": "Warning", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "messages": ["Replicate set contains only a single biological replicate"]}], "status": "released", "aliases": ["bing-ren-lab:wtc11_aavs1_gfp_c28_snHiC"], "accession": "4DNESF829JOW", "condition": "clone 28", "description": "Single nucleus Hi-C on Modified WTC-11 (GM25236) with GFP tagged AAVS1 locus - clone 28, select nucleus from G1 phase only", "date_created": "2020-04-24T07:40:39.136744+00:00", "submitted_by": {"error": "no view permissions"}, "dataset_label": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2020-04-28T13:42:20.245441+00:00"}, "public_release": "2020-04-28", "replicate_exps": [{"bio_rep_no": 1, "tec_rep_no": 1, "replicate_exp": {"display_title": "sn-Hi-C on WTC-11 AAVS1-GFP C28 with MboI - 4DNEXRB545EQ", "uuid": "2be92e96-6776-429a-a228-347beca17f07", "@type": ["ExperimentHiC", "Experiment", "Item"], "accession": "4DNEXRB545EQ", "@id": "/experiments-hi-c/4DNEXRB545EQ/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "schema_version": "2", "static_headers": [{"lab": {"status": "current", "@id": "/labs/4dn-dcic-lab/", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "body": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "name": "item-page-headers.ExperimentSet.data-usage-guidelines", "award": {"@id": "/awards/1U01CA200059-01/", "status": "current", "@type": ["Award", "Item"], "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Data Usage Guidelines", "status": "released", "aliases": [], "options": {"filetype": "md", "title_icon": "exclamation-circle", "collapsible": false, "default_open": true}, "date_created": "2018-08-06T03:09:55.543206+00:00", "section_type": "Item Page Header", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2022-05-09T09:31:34.537494+00:00"}, "schema_version": "2", "@id": "/static-sections/621e8359-3885-40ce-965d-91894aa7b758/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "621e8359-3885-40ce-965d-91894aa7b758", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267228139"]}, "display_title": "Data Usage Guidelines", "external_references": [], "content": "\n**Data Use Guidelines:** This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) \nand the 4DN Data Portal paper \n([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org).", "filetype": "md", "content_as_html": "

Data Use Guidelines: This is a data set generated by the \n4DN Network and made freely available to the scientific \ncommunity. If you are intending to use these data for a \npublication, we ask that you please contact the data \ngenerating lab to discuss possible coordinated publication. \nIn your manuscript, please cite the 4DN White Paper \n(doi:10.1038/nature23884) \nand the 4DN Data Portal paper \n(doi:10.1038/s41467-022-29697-4), \nand please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

"}], "project_release": "2020-04-28", "experiments_in_set": [{"status": "released", "@id": "/experiments-hi-c/4DNEXRB545EQ/", "files": [{"file_size": 480417704, "@type": ["FileFastq", "File", "Item"], "upload_key": "4f0d2896-6ec8-4171-adc2-576f4684422d/4DNFIVHQ4UQB.fastq.gz", "@id": "/files-fastq/4DNFIVHQ4UQB/", "md5sum": "6ef6a5902741aaf7b52987f7ea83e6dd", "uuid": "4f0d2896-6ec8-4171-adc2-576f4684422d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIVHQ4UQB.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4f0d2896-6ec8-4171-adc2-576f4684422d/4DNFIVHQ4UQB.fastq.gz", "accession": "4DNFIVHQ4UQB", "href": "/files-fastq/4DNFIVHQ4UQB/@@download/4DNFIVHQ4UQB.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJGNJU3E/", "paired_end": "2", "uuid": "7293bd46-2417-4c54-84c9-bbd1fa4d4e39", "display_title": "4DNFIJGNJU3E.fastq.gz", "accession": "4DNFIJGNJU3E", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2b221e6f-9ceb-41a3-b64b-e87bc3d6fd97/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2b221e6f-9ceb-41a3-b64b-e87bc3d6fd97", "Total Sequences": 8132182, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVHQ4UQB/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 356288159, "@type": ["FileFastq", "File", "Item"], "upload_key": "0c804b93-4486-4aeb-84ca-c59e7267d5ce/4DNFIXETAAX9.fastq.gz", "@id": "/files-fastq/4DNFIXETAAX9/", "md5sum": "aaba04133977a4be0c63047d3642699d", "uuid": "0c804b93-4486-4aeb-84ca-c59e7267d5ce", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIXETAAX9.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c804b93-4486-4aeb-84ca-c59e7267d5ce/4DNFIXETAAX9.fastq.gz", "accession": "4DNFIXETAAX9", "href": "/files-fastq/4DNFIXETAAX9/@@download/4DNFIXETAAX9.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4M2LIR5/", "paired_end": "2", "uuid": "18331316-1e1d-4d78-91e6-20b4b2023c12", "display_title": "4DNFI4M2LIR5.fastq.gz", "accession": "4DNFI4M2LIR5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/68122e35-6e3b-42a9-a7b2-50f565eecd3a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "68122e35-6e3b-42a9-a7b2-50f565eecd3a", "Total Sequences": 6205259, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXETAAX9/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 643015316, "@type": ["FileFastq", "File", "Item"], "upload_key": "64929575-54c8-41c8-abc7-fa766f215fc4/4DNFISW5T5AG.fastq.gz", "@id": "/files-fastq/4DNFISW5T5AG/", "md5sum": "103d3be89909cb4410b04dc51bd64ddf", "uuid": "64929575-54c8-41c8-abc7-fa766f215fc4", "paired_end": "1", "file_type": "reads", "display_title": "4DNFISW5T5AG.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/64929575-54c8-41c8-abc7-fa766f215fc4/4DNFISW5T5AG.fastq.gz", "accession": "4DNFISW5T5AG", "href": "/files-fastq/4DNFISW5T5AG/@@download/4DNFISW5T5AG.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIVANU5QT/", "paired_end": "2", "uuid": "388ba5e1-e974-4ac6-a6b7-f686232b9416", "display_title": "4DNFIVANU5QT.fastq.gz", "accession": "4DNFIVANU5QT", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/dd26d80d-9750-4e1f-abc4-a12cea2e8c9a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "dd26d80d-9750-4e1f-abc4-a12cea2e8c9a", "Total Sequences": 10529256, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISW5T5AG/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 674337258, "@type": ["FileFastq", "File", "Item"], "upload_key": "ea863487-627e-4649-8bd2-bdb4c7e8259e/4DNFINUICIH1.fastq.gz", "@id": "/files-fastq/4DNFINUICIH1/", "md5sum": "39fb7cc6e3f06ccb3d8931c96a68069e", "uuid": "ea863487-627e-4649-8bd2-bdb4c7e8259e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFINUICIH1.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ea863487-627e-4649-8bd2-bdb4c7e8259e/4DNFINUICIH1.fastq.gz", "accession": "4DNFINUICIH1", "href": "/files-fastq/4DNFINUICIH1/@@download/4DNFINUICIH1.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIF27U5E8/", "paired_end": "2", "uuid": "d6be2eff-c070-4bc7-a058-d4c6a62c9d14", "display_title": "4DNFIF27U5E8.fastq.gz", "accession": "4DNFIF27U5E8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/99a152d7-d20a-41b4-bdd3-d5c5000ff85d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "99a152d7-d20a-41b4-bdd3-d5c5000ff85d", "Total Sequences": 11707271, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINUICIH1/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 760413841, "@type": ["FileFastq", "File", "Item"], "upload_key": "bb957942-d317-4e4a-ac98-9963c365395e/4DNFIL5M39MH.fastq.gz", "@id": "/files-fastq/4DNFIL5M39MH/", "md5sum": "9c965ca76ed4a803007f2752b6b3f737", "uuid": "bb957942-d317-4e4a-ac98-9963c365395e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIL5M39MH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bb957942-d317-4e4a-ac98-9963c365395e/4DNFIL5M39MH.fastq.gz", "accession": "4DNFIL5M39MH", "href": "/files-fastq/4DNFIL5M39MH/@@download/4DNFIL5M39MH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPLY79GK/", "paired_end": "2", "uuid": "8c53a413-ac47-4e8c-bb7c-69edea06fc00", "display_title": "4DNFIPLY79GK.fastq.gz", "accession": "4DNFIPLY79GK", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a8c8d1ac-bca6-4d6b-b9dd-5e491aa47f2b/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a8c8d1ac-bca6-4d6b-b9dd-5e491aa47f2b", "Total Sequences": 12783500, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIL5M39MH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 636367205, "@type": ["FileFastq", "File", "Item"], "upload_key": "2c9e7a25-7c78-4064-b7d6-ceed9f576923/4DNFIF39GWDT.fastq.gz", "@id": "/files-fastq/4DNFIF39GWDT/", "md5sum": "d15f2d34dd2484ae71f45a03463fac79", "uuid": "2c9e7a25-7c78-4064-b7d6-ceed9f576923", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIF39GWDT.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2c9e7a25-7c78-4064-b7d6-ceed9f576923/4DNFIF39GWDT.fastq.gz", "accession": "4DNFIF39GWDT", "href": "/files-fastq/4DNFIF39GWDT/@@download/4DNFIF39GWDT.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFICBDT4EW/", "paired_end": "2", "uuid": "a3e5feed-eea0-4541-9253-d8c6de8f379c", "display_title": "4DNFICBDT4EW.fastq.gz", "accession": "4DNFICBDT4EW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d6f8285f-2452-4f50-9f1e-4530b4337673/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d6f8285f-2452-4f50-9f1e-4530b4337673", "Total Sequences": 10854441, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF39GWDT/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 679504263, "@type": ["FileFastq", "File", "Item"], "upload_key": "16a728af-d514-4a10-a85f-004c62225fc7/4DNFI6MKOCCL.fastq.gz", "@id": "/files-fastq/4DNFI6MKOCCL/", "md5sum": "c1fcf81bee3891e3c8bc5c5c16bd0049", "uuid": "16a728af-d514-4a10-a85f-004c62225fc7", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI6MKOCCL.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/16a728af-d514-4a10-a85f-004c62225fc7/4DNFI6MKOCCL.fastq.gz", "accession": "4DNFI6MKOCCL", "href": "/files-fastq/4DNFI6MKOCCL/@@download/4DNFI6MKOCCL.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFICPFMTUP/", "paired_end": "2", "uuid": "f505d396-9cdb-4d53-a1fb-df3923fddb1d", "display_title": "4DNFICPFMTUP.fastq.gz", "accession": "4DNFICPFMTUP", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/ed2c65ff-9825-4556-ba6a-4fea9aafade6/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "ed2c65ff-9825-4556-ba6a-4fea9aafade6", "Total Sequences": 11598522, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6MKOCCL/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 723509017, "@type": ["FileFastq", "File", "Item"], "upload_key": "41ab906d-d068-4693-878c-e0594711e4b7/4DNFIXB1QMSM.fastq.gz", "@id": "/files-fastq/4DNFIXB1QMSM/", "md5sum": "e70405680de8c89b839400622ed494a3", "uuid": "41ab906d-d068-4693-878c-e0594711e4b7", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIXB1QMSM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/41ab906d-d068-4693-878c-e0594711e4b7/4DNFIXB1QMSM.fastq.gz", "accession": "4DNFIXB1QMSM", "href": "/files-fastq/4DNFIXB1QMSM/@@download/4DNFIXB1QMSM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIIWMQUUC/", "paired_end": "2", "uuid": "1d578e23-ab3c-4812-8de5-0e72476d7380", "display_title": "4DNFIIWMQUUC.fastq.gz", "accession": "4DNFIIWMQUUC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8480e830-0d87-4bc8-9e55-a3a674892069/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8480e830-0d87-4bc8-9e55-a3a674892069", "Total Sequences": 11771751, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXB1QMSM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 695913008, "@type": ["FileFastq", "File", "Item"], "upload_key": "51a193d7-5bb2-4b00-a404-6ae7816766bc/4DNFIA92J5FM.fastq.gz", "@id": "/files-fastq/4DNFIA92J5FM/", "md5sum": "eabf4cead7240ab3bc05488b7de00c95", "uuid": "51a193d7-5bb2-4b00-a404-6ae7816766bc", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIA92J5FM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/51a193d7-5bb2-4b00-a404-6ae7816766bc/4DNFIA92J5FM.fastq.gz", "accession": "4DNFIA92J5FM", "href": "/files-fastq/4DNFIA92J5FM/@@download/4DNFIA92J5FM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISG13WAZ/", "paired_end": "2", "uuid": "297b9376-a066-404d-be56-2acff4e2a143", "display_title": "4DNFISG13WAZ.fastq.gz", "accession": "4DNFISG13WAZ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/353f663f-5b70-4ffa-b744-3a3b3eef40db/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "353f663f-5b70-4ffa-b744-3a3b3eef40db", "Total Sequences": 11682638, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA92J5FM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 742064729, "@type": ["FileFastq", "File", "Item"], "upload_key": "42882c86-84f5-47eb-a625-d170fc47a578/4DNFIGGI2VZS.fastq.gz", "@id": "/files-fastq/4DNFIGGI2VZS/", "md5sum": "078c186272649b73aae7e0b1ebc8173f", "uuid": "42882c86-84f5-47eb-a625-d170fc47a578", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIGGI2VZS.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/42882c86-84f5-47eb-a625-d170fc47a578/4DNFIGGI2VZS.fastq.gz", "accession": "4DNFIGGI2VZS", "href": "/files-fastq/4DNFIGGI2VZS/@@download/4DNFIGGI2VZS.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFILH6VUF4/", "paired_end": "2", "uuid": "f73d3ed1-d40d-4dae-bcba-11cadd90d30a", "display_title": "4DNFILH6VUF4.fastq.gz", "accession": "4DNFILH6VUF4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b36f8c9b-1a40-400d-b8a1-e48d7b8e791f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b36f8c9b-1a40-400d-b8a1-e48d7b8e791f", "Total Sequences": 13095928, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGGI2VZS/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 384065052, "@type": ["FileFastq", "File", "Item"], "upload_key": "6411c68a-f706-4b71-84cd-13b4cd28ec85/4DNFIGHPCEO4.fastq.gz", "@id": "/files-fastq/4DNFIGHPCEO4/", "md5sum": "35e8826938c506bd0254248943444440", "uuid": "6411c68a-f706-4b71-84cd-13b4cd28ec85", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIGHPCEO4.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6411c68a-f706-4b71-84cd-13b4cd28ec85/4DNFIGHPCEO4.fastq.gz", "accession": "4DNFIGHPCEO4", "href": "/files-fastq/4DNFIGHPCEO4/@@download/4DNFIGHPCEO4.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIO9VJM4E/", "paired_end": "2", "uuid": "ef7530f5-2b23-452e-9692-364f1fef7ca8", "display_title": "4DNFIO9VJM4E.fastq.gz", "accession": "4DNFIO9VJM4E", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/03d16c54-79e1-4b3f-b670-24d119e5b5a5/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "03d16c54-79e1-4b3f-b670-24d119e5b5a5", "Total Sequences": 6152432, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGHPCEO4/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 401597163, "@type": ["FileFastq", "File", "Item"], "upload_key": "0811ffc9-cc18-4f0b-8fb5-18f1123f738f/4DNFIWDNC1CC.fastq.gz", "@id": "/files-fastq/4DNFIWDNC1CC/", "md5sum": "eef9c22d9c87fdf290c09a2c42bb1233", "uuid": "0811ffc9-cc18-4f0b-8fb5-18f1123f738f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIWDNC1CC.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0811ffc9-cc18-4f0b-8fb5-18f1123f738f/4DNFIWDNC1CC.fastq.gz", "accession": "4DNFIWDNC1CC", "href": "/files-fastq/4DNFIWDNC1CC/@@download/4DNFIWDNC1CC.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIAZCGSAE/", "paired_end": "2", "uuid": "c7cf2f91-2e6a-48da-a61b-12584ef66b8b", "display_title": "4DNFIAZCGSAE.fastq.gz", "accession": "4DNFIAZCGSAE", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/eb963d44-3b64-4d87-83fb-7ed6bf66f42e/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "eb963d44-3b64-4d87-83fb-7ed6bf66f42e", "Total Sequences": 7048735, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWDNC1CC/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 498361712, "@type": ["FileFastq", "File", "Item"], "upload_key": "c1f4bfa2-a8f3-4123-8bda-2666dd1b7164/4DNFIF5C13VS.fastq.gz", "@id": "/files-fastq/4DNFIF5C13VS/", "md5sum": "3dfebc916e551cf7eb8ac9ae7bd51ac6", "uuid": "c1f4bfa2-a8f3-4123-8bda-2666dd1b7164", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIF5C13VS.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c1f4bfa2-a8f3-4123-8bda-2666dd1b7164/4DNFIF5C13VS.fastq.gz", "accession": "4DNFIF5C13VS", "href": "/files-fastq/4DNFIF5C13VS/@@download/4DNFIF5C13VS.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIDMWVLKJ/", "paired_end": "2", "uuid": "3d518e00-8117-4828-8a85-47208effc04a", "display_title": "4DNFIDMWVLKJ.fastq.gz", "accession": "4DNFIDMWVLKJ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8f121206-56d3-4d92-8c51-e0df737d634d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8f121206-56d3-4d92-8c51-e0df737d634d", "Total Sequences": 9046290, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF5C13VS/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 385190302, "@type": ["FileFastq", "File", "Item"], "upload_key": "ca241f43-b86b-4cc0-9451-8c4c8b0c2b4e/4DNFI3BF5G6P.fastq.gz", "@id": "/files-fastq/4DNFI3BF5G6P/", "md5sum": "ce7385b3e5cfb717ec08d18f2e4f842b", "uuid": "ca241f43-b86b-4cc0-9451-8c4c8b0c2b4e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI3BF5G6P.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ca241f43-b86b-4cc0-9451-8c4c8b0c2b4e/4DNFI3BF5G6P.fastq.gz", "accession": "4DNFI3BF5G6P", "href": "/files-fastq/4DNFI3BF5G6P/@@download/4DNFI3BF5G6P.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJBIWUFW/", "paired_end": "2", "uuid": "88f7937c-4467-421c-81cc-b35b4e062a27", "display_title": "4DNFIJBIWUFW.fastq.gz", "accession": "4DNFIJBIWUFW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e86241de-12f8-4c32-a2b9-16ecdce99894/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e86241de-12f8-4c32-a2b9-16ecdce99894", "Total Sequences": 6967204, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3BF5G6P/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 529386541, "@type": ["FileFastq", "File", "Item"], "upload_key": "fc8e079f-e90c-4bf0-a613-7af586302399/4DNFIKXJUDWZ.fastq.gz", "@id": "/files-fastq/4DNFIKXJUDWZ/", "md5sum": "ba46b9d2729c0d9b269b16a675c5716e", "uuid": "fc8e079f-e90c-4bf0-a613-7af586302399", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIKXJUDWZ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fc8e079f-e90c-4bf0-a613-7af586302399/4DNFIKXJUDWZ.fastq.gz", "accession": "4DNFIKXJUDWZ", "href": "/files-fastq/4DNFIKXJUDWZ/@@download/4DNFIKXJUDWZ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2CT8TTD/", "paired_end": "2", "uuid": "873038d2-c665-4b97-9356-a50c94cbf379", "display_title": "4DNFI2CT8TTD.fastq.gz", "accession": "4DNFI2CT8TTD", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/968e992f-76f2-453f-8ee3-9935be747fb1/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "968e992f-76f2-453f-8ee3-9935be747fb1", "Total Sequences": 9318067, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKXJUDWZ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 752269725, "@type": ["FileFastq", "File", "Item"], "upload_key": "2249d314-00ef-4c5c-8663-673e9b92c2ec/4DNFIUH9GVOK.fastq.gz", "@id": "/files-fastq/4DNFIUH9GVOK/", "md5sum": "289de8d6475ccd791d75514b2c4b6ff8", "uuid": "2249d314-00ef-4c5c-8663-673e9b92c2ec", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIUH9GVOK.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2249d314-00ef-4c5c-8663-673e9b92c2ec/4DNFIUH9GVOK.fastq.gz", "accession": "4DNFIUH9GVOK", "href": "/files-fastq/4DNFIUH9GVOK/@@download/4DNFIUH9GVOK.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIM5TJ93A/", "paired_end": "2", "uuid": "4c291944-645c-4c08-a5fe-20e2f40b89b5", "display_title": "4DNFIM5TJ93A.fastq.gz", "accession": "4DNFIM5TJ93A", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9175c887-d34f-48b8-b144-f7e4493162a9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9175c887-d34f-48b8-b144-f7e4493162a9", "Total Sequences": 13740299, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUH9GVOK/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 203717751, "@type": ["FileFastq", "File", "Item"], "upload_key": "efee695c-ecef-4917-ba46-fbc2908666f4/4DNFIF6TJH8Z.fastq.gz", "@id": "/files-fastq/4DNFIF6TJH8Z/", "md5sum": "3bab48bd704ae324bbe22127b90b0270", "uuid": "efee695c-ecef-4917-ba46-fbc2908666f4", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIF6TJH8Z.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/efee695c-ecef-4917-ba46-fbc2908666f4/4DNFIF6TJH8Z.fastq.gz", "accession": "4DNFIF6TJH8Z", "href": "/files-fastq/4DNFIF6TJH8Z/@@download/4DNFIF6TJH8Z.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIR2I8619/", "paired_end": "2", "uuid": "f5d8d88e-d7ab-4ef9-86e0-0230d21e0271", "display_title": "4DNFIR2I8619.fastq.gz", "accession": "4DNFIR2I8619", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9d42b73b-7716-4e58-bef4-8bdd6852d41a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9d42b73b-7716-4e58-bef4-8bdd6852d41a", "Total Sequences": 3702129, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF6TJH8Z/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 71894215, "@type": ["FileFastq", "File", "Item"], "upload_key": "9fd5fb02-0259-4a17-8f97-a44278b6d8ee/4DNFIH9Z7BFF.fastq.gz", "@id": "/files-fastq/4DNFIH9Z7BFF/", "md5sum": "846d10e7955d4b370ec955446eab271c", "uuid": "9fd5fb02-0259-4a17-8f97-a44278b6d8ee", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIH9Z7BFF.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9fd5fb02-0259-4a17-8f97-a44278b6d8ee/4DNFIH9Z7BFF.fastq.gz", "accession": "4DNFIH9Z7BFF", "href": "/files-fastq/4DNFIH9Z7BFF/@@download/4DNFIH9Z7BFF.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUCK9M4J/", "paired_end": "2", "uuid": "c8d23429-ac2d-44a3-a3d0-d333eb8ac2a5", "display_title": "4DNFIUCK9M4J.fastq.gz", "accession": "4DNFIUCK9M4J", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8d54632c-08f6-4c77-8997-fdebe2075504/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8d54632c-08f6-4c77-8997-fdebe2075504", "Total Sequences": 1316568, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIH9Z7BFF/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 822007610, "@type": ["FileFastq", "File", "Item"], "upload_key": "04a1e5fa-18ce-47d3-a59c-b71fef8ee67f/4DNFIXP8NPCO.fastq.gz", "@id": "/files-fastq/4DNFIXP8NPCO/", "md5sum": "adbc574be95da74ab9fc44922c4c8878", "uuid": "04a1e5fa-18ce-47d3-a59c-b71fef8ee67f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIXP8NPCO.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/04a1e5fa-18ce-47d3-a59c-b71fef8ee67f/4DNFIXP8NPCO.fastq.gz", "accession": "4DNFIXP8NPCO", "href": "/files-fastq/4DNFIXP8NPCO/@@download/4DNFIXP8NPCO.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2GKJ5FV/", "paired_end": "2", "uuid": "bf0e9fb8-fdfe-472e-9354-3a8a3712decc", "display_title": "4DNFI2GKJ5FV.fastq.gz", "accession": "4DNFI2GKJ5FV", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1f6e9288-1ef9-4c71-9827-c82cd46c4916/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1f6e9288-1ef9-4c71-9827-c82cd46c4916", "Total Sequences": 15002795, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXP8NPCO/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 757945757, "@type": ["FileFastq", "File", "Item"], "upload_key": "080fc533-1efc-4073-9f9a-498c2685ea8b/4DNFIMMLFIBS.fastq.gz", "@id": "/files-fastq/4DNFIMMLFIBS/", "md5sum": "7dbc73253de36050ee53861fc8edd7de", "uuid": "080fc533-1efc-4073-9f9a-498c2685ea8b", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIMMLFIBS.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/080fc533-1efc-4073-9f9a-498c2685ea8b/4DNFIMMLFIBS.fastq.gz", "accession": "4DNFIMMLFIBS", "href": "/files-fastq/4DNFIMMLFIBS/@@download/4DNFIMMLFIBS.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIG7PPMXC/", "paired_end": "2", "uuid": "d78a37ad-611d-45c0-863e-f6bf5eb27d90", "display_title": "4DNFIG7PPMXC.fastq.gz", "accession": "4DNFIG7PPMXC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7a065cf8-95fe-4371-9270-7cbdadbfd543/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7a065cf8-95fe-4371-9270-7cbdadbfd543", "Total Sequences": 13674124, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMMLFIBS/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 890511568, "@type": ["FileFastq", "File", "Item"], "upload_key": "5d1a339c-1072-432b-b449-54bcef61b120/4DNFI6SNLOGM.fastq.gz", "@id": "/files-fastq/4DNFI6SNLOGM/", "md5sum": "25f529c75fcdd44b87b8a33a595f85a6", "uuid": "5d1a339c-1072-432b-b449-54bcef61b120", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI6SNLOGM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5d1a339c-1072-432b-b449-54bcef61b120/4DNFI6SNLOGM.fastq.gz", "accession": "4DNFI6SNLOGM", "href": "/files-fastq/4DNFI6SNLOGM/@@download/4DNFI6SNLOGM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFITTFPZ9F/", "paired_end": "2", "uuid": "178e0c9f-6e14-417c-8030-fe8cb7944210", "display_title": "4DNFITTFPZ9F.fastq.gz", "accession": "4DNFITTFPZ9F", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4469b02a-c699-4391-9871-c3312c61271e/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4469b02a-c699-4391-9871-c3312c61271e", "Total Sequences": 15993981, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6SNLOGM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 775706455, "@type": ["FileFastq", "File", "Item"], "upload_key": "490bdd3b-0b4b-4010-afa5-238de9f3e83b/4DNFIXYNTMJ7.fastq.gz", "@id": "/files-fastq/4DNFIXYNTMJ7/", "md5sum": "b7f44bfcb9ce006a0fc400d5aa8f3746", "uuid": "490bdd3b-0b4b-4010-afa5-238de9f3e83b", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIXYNTMJ7.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/490bdd3b-0b4b-4010-afa5-238de9f3e83b/4DNFIXYNTMJ7.fastq.gz", "accession": "4DNFIXYNTMJ7", "href": "/files-fastq/4DNFIXYNTMJ7/@@download/4DNFIXYNTMJ7.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIT6VVZCH/", "paired_end": "2", "uuid": "502b540d-7205-4e34-bf9b-b932479ad050", "display_title": "4DNFIT6VVZCH.fastq.gz", "accession": "4DNFIT6VVZCH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/0e0494f4-426e-453e-977c-00c021c581b1/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "0e0494f4-426e-453e-977c-00c021c581b1", "Total Sequences": 13479968, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXYNTMJ7/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 233611309, "@type": ["FileFastq", "File", "Item"], "upload_key": "6c70dad7-089a-4b3c-a36e-0e7c0c9ebf00/4DNFIPRIY9KU.fastq.gz", "@id": "/files-fastq/4DNFIPRIY9KU/", "md5sum": "ea51a99c61f249782c7c045d3998ac18", "uuid": "6c70dad7-089a-4b3c-a36e-0e7c0c9ebf00", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIPRIY9KU.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6c70dad7-089a-4b3c-a36e-0e7c0c9ebf00/4DNFIPRIY9KU.fastq.gz", "accession": "4DNFIPRIY9KU", "href": "/files-fastq/4DNFIPRIY9KU/@@download/4DNFIPRIY9KU.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINCI1I7R/", "paired_end": "2", "uuid": "037818c9-27e6-49ec-a6cb-0e2dfccefe9e", "display_title": "4DNFINCI1I7R.fastq.gz", "accession": "4DNFINCI1I7R", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a9a4bc26-72d1-4768-9acd-6e9bd663ede2/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a9a4bc26-72d1-4768-9acd-6e9bd663ede2", "Total Sequences": 4077177, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPRIY9KU/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 590969138, "@type": ["FileFastq", "File", "Item"], "upload_key": "1fb7cdb3-b57c-49ed-91a5-c13a79509d0f/4DNFIN8LHLCW.fastq.gz", "@id": "/files-fastq/4DNFIN8LHLCW/", "md5sum": "77cd102d0fc007967fb69fa447d18923", "uuid": "1fb7cdb3-b57c-49ed-91a5-c13a79509d0f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIN8LHLCW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1fb7cdb3-b57c-49ed-91a5-c13a79509d0f/4DNFIN8LHLCW.fastq.gz", "accession": "4DNFIN8LHLCW", "href": "/files-fastq/4DNFIN8LHLCW/@@download/4DNFIN8LHLCW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIB17QVFC/", "paired_end": "2", "uuid": "463fb804-22c2-4f71-9670-87c6681f3301", "display_title": "4DNFIB17QVFC.fastq.gz", "accession": "4DNFIB17QVFC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d531ad53-3666-410f-8c5c-ef56dfa17fa1/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d531ad53-3666-410f-8c5c-ef56dfa17fa1", "Total Sequences": 9118739, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIN8LHLCW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 558829259, "@type": ["FileFastq", "File", "Item"], "upload_key": "26a5002f-7586-43fa-b3fe-a375c1ba574f/4DNFI1XHDX15.fastq.gz", "@id": "/files-fastq/4DNFI1XHDX15/", "md5sum": "f211e31afb3d3628b22aa737beb2af54", "uuid": "26a5002f-7586-43fa-b3fe-a375c1ba574f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI1XHDX15.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/26a5002f-7586-43fa-b3fe-a375c1ba574f/4DNFI1XHDX15.fastq.gz", "accession": "4DNFI1XHDX15", "href": "/files-fastq/4DNFI1XHDX15/@@download/4DNFI1XHDX15.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI9432Y1T/", "paired_end": "2", "uuid": "b2c4d889-0495-4d8c-97ad-670434271fd5", "display_title": "4DNFI9432Y1T.fastq.gz", "accession": "4DNFI9432Y1T", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/afe0a9af-ff1e-4cce-b564-c0e52504d44c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "afe0a9af-ff1e-4cce-b564-c0e52504d44c", "Total Sequences": 10143575, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1XHDX15/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 544476550, "@type": ["FileFastq", "File", "Item"], "upload_key": "822fb630-417c-4a25-b596-f7f16834c126/4DNFIC1ZTY7T.fastq.gz", "@id": "/files-fastq/4DNFIC1ZTY7T/", "md5sum": "cbde75ba5629a95580b8586be05e28d3", "uuid": "822fb630-417c-4a25-b596-f7f16834c126", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIC1ZTY7T.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/822fb630-417c-4a25-b596-f7f16834c126/4DNFIC1ZTY7T.fastq.gz", "accession": "4DNFIC1ZTY7T", "href": "/files-fastq/4DNFIC1ZTY7T/@@download/4DNFIC1ZTY7T.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIWS6CPCO/", "paired_end": "2", "uuid": "0d6c7484-de8f-45aa-9336-550d43886e06", "display_title": "4DNFIWS6CPCO.fastq.gz", "accession": "4DNFIWS6CPCO", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/28eb2ffa-90e2-41c8-b317-7a8f65d01402/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "28eb2ffa-90e2-41c8-b317-7a8f65d01402", "Total Sequences": 9939745, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIC1ZTY7T/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 400054304, "@type": ["FileFastq", "File", "Item"], "upload_key": "65ed36d6-5609-4345-bf84-6e060d4010a8/4DNFI3QUHMIO.fastq.gz", "@id": "/files-fastq/4DNFI3QUHMIO/", "md5sum": "e91c58ef92ade0b4ebdc7f609863cd8f", "uuid": "65ed36d6-5609-4345-bf84-6e060d4010a8", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI3QUHMIO.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/65ed36d6-5609-4345-bf84-6e060d4010a8/4DNFI3QUHMIO.fastq.gz", "accession": "4DNFI3QUHMIO", "href": "/files-fastq/4DNFI3QUHMIO/@@download/4DNFI3QUHMIO.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIYB7671S/", "paired_end": "2", "uuid": "150de83d-64d5-4d01-9c59-c37dc0b329a0", "display_title": "4DNFIYB7671S.fastq.gz", "accession": "4DNFIYB7671S", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/354fe2fb-adb0-4ce0-86c4-661e1100a763/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "354fe2fb-adb0-4ce0-86c4-661e1100a763", "Total Sequences": 7203022, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3QUHMIO/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 366807028, "@type": ["FileFastq", "File", "Item"], "upload_key": "9b605b24-6403-4af9-82a2-3a2118625ba6/4DNFIJF61QFI.fastq.gz", "@id": "/files-fastq/4DNFIJF61QFI/", "md5sum": "c59c6ad413fcc2fb41ad31b01aeb632a", "uuid": "9b605b24-6403-4af9-82a2-3a2118625ba6", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIJF61QFI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9b605b24-6403-4af9-82a2-3a2118625ba6/4DNFIJF61QFI.fastq.gz", "accession": "4DNFIJF61QFI", "href": "/files-fastq/4DNFIJF61QFI/@@download/4DNFIJF61QFI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI455HRUW/", "paired_end": "2", "uuid": "6aac0e6d-cc0e-4e0d-8354-661907978ce9", "display_title": "4DNFI455HRUW.fastq.gz", "accession": "4DNFI455HRUW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/ca36a370-2a36-427f-bc8e-74fccacee6c8/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "ca36a370-2a36-427f-bc8e-74fccacee6c8", "Total Sequences": 6706184, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJF61QFI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 733475566, "@type": ["FileFastq", "File", "Item"], "upload_key": "1b659c03-adbe-4092-ad96-dc59df4db9ff/4DNFIQ986X4R.fastq.gz", "@id": "/files-fastq/4DNFIQ986X4R/", "md5sum": "c033308fb4e0ea32ea236b2f149b894d", "uuid": "1b659c03-adbe-4092-ad96-dc59df4db9ff", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIQ986X4R.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1b659c03-adbe-4092-ad96-dc59df4db9ff/4DNFIQ986X4R.fastq.gz", "accession": "4DNFIQ986X4R", "href": "/files-fastq/4DNFIQ986X4R/@@download/4DNFIQ986X4R.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIAF6O7PY/", "paired_end": "2", "uuid": "fe644bd3-bad1-4539-93de-461483324b05", "display_title": "4DNFIAF6O7PY.fastq.gz", "accession": "4DNFIAF6O7PY", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/40af8e08-fc0b-4313-ade3-f7296e913538/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "40af8e08-fc0b-4313-ade3-f7296e913538", "Total Sequences": 13347974, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQ986X4R/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 473456795, "@type": ["FileFastq", "File", "Item"], "upload_key": "b8b9e72d-91bd-407e-ae6f-ca4483d1632d/4DNFIU4LCC32.fastq.gz", "@id": "/files-fastq/4DNFIU4LCC32/", "md5sum": "88d6600d2fa5ee41f727d79b53d74218", "uuid": "b8b9e72d-91bd-407e-ae6f-ca4483d1632d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIU4LCC32.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b8b9e72d-91bd-407e-ae6f-ca4483d1632d/4DNFIU4LCC32.fastq.gz", "accession": "4DNFIU4LCC32", "href": "/files-fastq/4DNFIU4LCC32/@@download/4DNFIU4LCC32.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2NQEUXW/", "paired_end": "2", "uuid": "fed30076-fd96-4828-8458-92d860a1754c", "display_title": "4DNFI2NQEUXW.fastq.gz", "accession": "4DNFI2NQEUXW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2745468e-1f32-4c2e-8e05-11214e7093d9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2745468e-1f32-4c2e-8e05-11214e7093d9", "Total Sequences": 8663171, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIU4LCC32/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 314386887, "@type": ["FileFastq", "File", "Item"], "upload_key": "31e99752-46ef-41ca-8fae-d970172c6c8a/4DNFINPJVJR3.fastq.gz", "@id": "/files-fastq/4DNFINPJVJR3/", "md5sum": "266083e4f8acb105c6845b61f3d59625", "uuid": "31e99752-46ef-41ca-8fae-d970172c6c8a", "paired_end": "1", "file_type": "reads", "display_title": "4DNFINPJVJR3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/31e99752-46ef-41ca-8fae-d970172c6c8a/4DNFINPJVJR3.fastq.gz", "accession": "4DNFINPJVJR3", "href": "/files-fastq/4DNFINPJVJR3/@@download/4DNFINPJVJR3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJ4E3V5U/", "paired_end": "2", "uuid": "15bf9e3d-eaa2-4bba-9fd9-1f77e1ea0769", "display_title": "4DNFIJ4E3V5U.fastq.gz", "accession": "4DNFIJ4E3V5U", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f5ce7fad-6066-4181-8b6e-514ae5d96b78/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f5ce7fad-6066-4181-8b6e-514ae5d96b78", "Total Sequences": 5731206, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINPJVJR3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 226077770, "@type": ["FileFastq", "File", "Item"], "upload_key": "5ae9a47e-8c52-403a-9c1b-bcbc33c5fe3f/4DNFI9UILHG2.fastq.gz", "@id": "/files-fastq/4DNFI9UILHG2/", "md5sum": "7d521019fcd65db113617ca134f0dcf6", "uuid": "5ae9a47e-8c52-403a-9c1b-bcbc33c5fe3f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI9UILHG2.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5ae9a47e-8c52-403a-9c1b-bcbc33c5fe3f/4DNFI9UILHG2.fastq.gz", "accession": "4DNFI9UILHG2", "href": "/files-fastq/4DNFI9UILHG2/@@download/4DNFI9UILHG2.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4VJHGL5/", "paired_end": "2", "uuid": "262c3e26-3d6f-4dcf-b1aa-43faab50e2e6", "display_title": "4DNFI4VJHGL5.fastq.gz", "accession": "4DNFI4VJHGL5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c244646d-566a-493a-9cf9-db2c14108e40/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c244646d-566a-493a-9cf9-db2c14108e40", "Total Sequences": 4092845, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9UILHG2/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 646287364, "@type": ["FileFastq", "File", "Item"], "upload_key": "beccef04-3fce-455e-b554-8915ec889c45/4DNFIDEYJAHF.fastq.gz", "@id": "/files-fastq/4DNFIDEYJAHF/", "md5sum": "3bad002fa59202681972ebef61108bed", "uuid": "beccef04-3fce-455e-b554-8915ec889c45", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIDEYJAHF.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/beccef04-3fce-455e-b554-8915ec889c45/4DNFIDEYJAHF.fastq.gz", "accession": "4DNFIDEYJAHF", "href": "/files-fastq/4DNFIDEYJAHF/@@download/4DNFIDEYJAHF.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI3PP2434/", "paired_end": "2", "uuid": "999f1016-7987-40ed-b40d-0a0d42b120cb", "display_title": "4DNFI3PP2434.fastq.gz", "accession": "4DNFI3PP2434", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/56ad9881-bd94-4f67-ad9b-2a323a4a688a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "56ad9881-bd94-4f67-ad9b-2a323a4a688a", "Total Sequences": 11800620, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDEYJAHF/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 722645667, "@type": ["FileFastq", "File", "Item"], "upload_key": "38dc5479-5d7c-4cf7-835c-83e743fd16ca/4DNFIOUUY98K.fastq.gz", "@id": "/files-fastq/4DNFIOUUY98K/", "md5sum": "0820e5e8156c9cf1440d39116d008acc", "uuid": "38dc5479-5d7c-4cf7-835c-83e743fd16ca", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIOUUY98K.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/38dc5479-5d7c-4cf7-835c-83e743fd16ca/4DNFIOUUY98K.fastq.gz", "accession": "4DNFIOUUY98K", "href": "/files-fastq/4DNFIOUUY98K/@@download/4DNFIOUUY98K.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQULZPIY/", "paired_end": "2", "uuid": "a2aee686-4909-4d22-ad9b-3ba9d9e72d09", "display_title": "4DNFIQULZPIY.fastq.gz", "accession": "4DNFIQULZPIY", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/434a52e0-564a-413d-a9c9-421427ea3251/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "434a52e0-564a-413d-a9c9-421427ea3251", "Total Sequences": 13314336, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOUUY98K/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 335658477, "@type": ["FileFastq", "File", "Item"], "upload_key": "6012fb35-4bc2-409b-9cd5-f941e7d796a1/4DNFIRKXBEOP.fastq.gz", "@id": "/files-fastq/4DNFIRKXBEOP/", "md5sum": "25651ff91654bbfc89b839996b43a6c7", "uuid": "6012fb35-4bc2-409b-9cd5-f941e7d796a1", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIRKXBEOP.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6012fb35-4bc2-409b-9cd5-f941e7d796a1/4DNFIRKXBEOP.fastq.gz", "accession": "4DNFIRKXBEOP", "href": "/files-fastq/4DNFIRKXBEOP/@@download/4DNFIRKXBEOP.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIRYWH6I8/", "paired_end": "2", "uuid": "80b2f65d-ebdd-4ebb-ae60-e22589756876", "display_title": "4DNFIRYWH6I8.fastq.gz", "accession": "4DNFIRYWH6I8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/965e493e-99f5-4019-adfb-6528e2db9c0f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "965e493e-99f5-4019-adfb-6528e2db9c0f", "Total Sequences": 6106001, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRKXBEOP/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 555927230, "@type": ["FileFastq", "File", "Item"], "upload_key": "d9a0cb3e-a4a2-4c75-9fa8-db944be6aab2/4DNFISPM4XIB.fastq.gz", "@id": "/files-fastq/4DNFISPM4XIB/", "md5sum": "7024d33fb46a66d22fb53b7eabb78b37", "uuid": "d9a0cb3e-a4a2-4c75-9fa8-db944be6aab2", "paired_end": "1", "file_type": "reads", "display_title": "4DNFISPM4XIB.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d9a0cb3e-a4a2-4c75-9fa8-db944be6aab2/4DNFISPM4XIB.fastq.gz", "accession": "4DNFISPM4XIB", "href": "/files-fastq/4DNFISPM4XIB/@@download/4DNFISPM4XIB.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2TFZMTY/", "paired_end": "2", "uuid": "67ba74f7-025f-4b05-871f-aec1c30992ba", "display_title": "4DNFI2TFZMTY.fastq.gz", "accession": "4DNFI2TFZMTY", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/332ffbeb-be7d-469b-ab5b-b8475596d3da/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "332ffbeb-be7d-469b-ab5b-b8475596d3da", "Total Sequences": 10222671, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISPM4XIB/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 623601834, "@type": ["FileFastq", "File", "Item"], "upload_key": "0d72c975-c291-49b6-8fa7-68faf93f4c28/4DNFI5ZF6P2V.fastq.gz", "@id": "/files-fastq/4DNFI5ZF6P2V/", "md5sum": "fbec04b2e4179ea277df0cff07138872", "uuid": "0d72c975-c291-49b6-8fa7-68faf93f4c28", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI5ZF6P2V.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0d72c975-c291-49b6-8fa7-68faf93f4c28/4DNFI5ZF6P2V.fastq.gz", "accession": "4DNFI5ZF6P2V", "href": "/files-fastq/4DNFI5ZF6P2V/@@download/4DNFI5ZF6P2V.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI3R6VXSI/", "paired_end": "2", "uuid": "50d56b62-be5d-4941-bafd-e3ef91d9424a", "display_title": "4DNFI3R6VXSI.fastq.gz", "accession": "4DNFI3R6VXSI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8ae564cd-61ae-4a00-8cf0-79126ec8bb2c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8ae564cd-61ae-4a00-8cf0-79126ec8bb2c", "Total Sequences": 11301856, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5ZF6P2V/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 716941625, "@type": ["FileFastq", "File", "Item"], "upload_key": "062a2077-10b8-4b0c-b260-fb2d2b014ce8/4DNFI88TYQ7G.fastq.gz", "@id": "/files-fastq/4DNFI88TYQ7G/", "md5sum": "552d1897141e55ec83d759701b887417", "uuid": "062a2077-10b8-4b0c-b260-fb2d2b014ce8", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI88TYQ7G.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/062a2077-10b8-4b0c-b260-fb2d2b014ce8/4DNFI88TYQ7G.fastq.gz", "accession": "4DNFI88TYQ7G", "href": "/files-fastq/4DNFI88TYQ7G/@@download/4DNFI88TYQ7G.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIATKFZ9K/", "paired_end": "2", "uuid": "de3ffc27-b65b-4dda-9fa0-5ebfa108da62", "display_title": "4DNFIATKFZ9K.fastq.gz", "accession": "4DNFIATKFZ9K", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c5d9aebc-83b2-4df7-8e3d-3425e7977bf6/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c5d9aebc-83b2-4df7-8e3d-3425e7977bf6", "Total Sequences": 13122528, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI88TYQ7G/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 713895344, "@type": ["FileFastq", "File", "Item"], "upload_key": "6e21651a-8992-4cf0-859e-994e236b471d/4DNFIBLXNB5W.fastq.gz", "@id": "/files-fastq/4DNFIBLXNB5W/", "md5sum": "ef50140e08cd2ae5783eb868bbd04e5b", "uuid": "6e21651a-8992-4cf0-859e-994e236b471d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIBLXNB5W.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6e21651a-8992-4cf0-859e-994e236b471d/4DNFIBLXNB5W.fastq.gz", "accession": "4DNFIBLXNB5W", "href": "/files-fastq/4DNFIBLXNB5W/@@download/4DNFIBLXNB5W.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHRDK73Z/", "paired_end": "2", "uuid": "8ccfbfae-622d-4db4-ae36-afafc5f05b30", "display_title": "4DNFIHRDK73Z.fastq.gz", "accession": "4DNFIHRDK73Z", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7d63ecd8-c599-4ccd-a9c2-4c796e10dbe4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7d63ecd8-c599-4ccd-a9c2-4c796e10dbe4", "Total Sequences": 12743790, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBLXNB5W/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 789181270, "@type": ["FileFastq", "File", "Item"], "upload_key": "05b6f190-88bf-4e8f-a4b8-8334364fe81d/4DNFIJJQCAJ7.fastq.gz", "@id": "/files-fastq/4DNFIJJQCAJ7/", "md5sum": "7b9628b5a3d61435134d8f56748e9f06", "uuid": "05b6f190-88bf-4e8f-a4b8-8334364fe81d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIJJQCAJ7.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/05b6f190-88bf-4e8f-a4b8-8334364fe81d/4DNFIJJQCAJ7.fastq.gz", "accession": "4DNFIJJQCAJ7", "href": "/files-fastq/4DNFIJJQCAJ7/@@download/4DNFIJJQCAJ7.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFITV8F4UG/", "paired_end": "2", "uuid": "425313b5-bd3b-45a5-96bd-9a3b42c646e4", "display_title": "4DNFITV8F4UG.fastq.gz", "accession": "4DNFITV8F4UG", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c817c673-87d1-40e5-bad7-e74d3374254d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c817c673-87d1-40e5-bad7-e74d3374254d", "Total Sequences": 14403965, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJJQCAJ7/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 829626394, "@type": ["FileFastq", "File", "Item"], "upload_key": "ebb5b54d-d4bc-47ad-bf60-f63e9fed9684/4DNFIBUS7ZM2.fastq.gz", "@id": "/files-fastq/4DNFIBUS7ZM2/", "md5sum": "7f5ca735b18c756be034a7d7fdd7504e", "uuid": "ebb5b54d-d4bc-47ad-bf60-f63e9fed9684", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIBUS7ZM2.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ebb5b54d-d4bc-47ad-bf60-f63e9fed9684/4DNFIBUS7ZM2.fastq.gz", "accession": "4DNFIBUS7ZM2", "href": "/files-fastq/4DNFIBUS7ZM2/@@download/4DNFIBUS7ZM2.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIAOVAH82/", "paired_end": "2", "uuid": "bdca3b1b-be1c-4948-98bd-f12a53ce50ed", "display_title": "4DNFIAOVAH82.fastq.gz", "accession": "4DNFIAOVAH82", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/19e0a639-b849-4cbb-b6d4-efc8e3ebc982/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "19e0a639-b849-4cbb-b6d4-efc8e3ebc982", "Total Sequences": 14970442, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBUS7ZM2/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 845985926, "@type": ["FileFastq", "File", "Item"], "upload_key": "7db616b4-ba2e-4187-9c67-7617009941d7/4DNFISUUKKA3.fastq.gz", "@id": "/files-fastq/4DNFISUUKKA3/", "md5sum": "01bfd4a47ac3af9d37617996761430cd", "uuid": "7db616b4-ba2e-4187-9c67-7617009941d7", "paired_end": "1", "file_type": "reads", "display_title": "4DNFISUUKKA3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7db616b4-ba2e-4187-9c67-7617009941d7/4DNFISUUKKA3.fastq.gz", "accession": "4DNFISUUKKA3", "href": "/files-fastq/4DNFISUUKKA3/@@download/4DNFISUUKKA3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIODCEJZ4/", "paired_end": "2", "uuid": "96f2bde1-d8eb-4ff7-b918-f53fd227b8ff", "display_title": "4DNFIODCEJZ4.fastq.gz", "accession": "4DNFIODCEJZ4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/14acd2a4-b777-4895-a3d8-2238b20fe7a2/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "14acd2a4-b777-4895-a3d8-2238b20fe7a2", "Total Sequences": 15422767, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISUUKKA3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 870880829, "@type": ["FileFastq", "File", "Item"], "upload_key": "a935e0ee-da14-42ec-bfde-0d23b68a03fc/4DNFI5PNFSFO.fastq.gz", "@id": "/files-fastq/4DNFI5PNFSFO/", "md5sum": "6015b689b06e7c45872db4650c160972", "uuid": "a935e0ee-da14-42ec-bfde-0d23b68a03fc", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI5PNFSFO.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a935e0ee-da14-42ec-bfde-0d23b68a03fc/4DNFI5PNFSFO.fastq.gz", "accession": "4DNFI5PNFSFO", "href": "/files-fastq/4DNFI5PNFSFO/@@download/4DNFI5PNFSFO.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIWFOUXCV/", "paired_end": "2", "uuid": "42964e5c-6af1-4262-b132-6403d227213c", "display_title": "4DNFIWFOUXCV.fastq.gz", "accession": "4DNFIWFOUXCV", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/31a17043-10c9-4333-84e0-700a24496532/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "31a17043-10c9-4333-84e0-700a24496532", "Total Sequences": 15843389, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5PNFSFO/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 827576087, "@type": ["FileFastq", "File", "Item"], "upload_key": "7c82e81d-0687-46d7-924e-f2ce83297b88/4DNFID3GCCEF.fastq.gz", "@id": "/files-fastq/4DNFID3GCCEF/", "md5sum": "ef166f77f7c85ed899ee32b138163c3b", "uuid": "7c82e81d-0687-46d7-924e-f2ce83297b88", "paired_end": "1", "file_type": "reads", "display_title": "4DNFID3GCCEF.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7c82e81d-0687-46d7-924e-f2ce83297b88/4DNFID3GCCEF.fastq.gz", "accession": "4DNFID3GCCEF", "href": "/files-fastq/4DNFID3GCCEF/@@download/4DNFID3GCCEF.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIROIMSA1/", "paired_end": "2", "uuid": "3256602d-df10-4f18-addc-e26e1ae282f6", "display_title": "4DNFIROIMSA1.fastq.gz", "accession": "4DNFIROIMSA1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b712fc8c-975d-4b90-97b6-85e95c17e8b9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b712fc8c-975d-4b90-97b6-85e95c17e8b9", "Total Sequences": 14948660, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFID3GCCEF/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 344531613, "@type": ["FileFastq", "File", "Item"], "upload_key": "c63864aa-577f-4b5f-bf08-447bfdc5a355/4DNFIBANC17L.fastq.gz", "@id": "/files-fastq/4DNFIBANC17L/", "md5sum": "bceeac67999a02ddd38c3c43f32c8ded", "uuid": "c63864aa-577f-4b5f-bf08-447bfdc5a355", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIBANC17L.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c63864aa-577f-4b5f-bf08-447bfdc5a355/4DNFIBANC17L.fastq.gz", "accession": "4DNFIBANC17L", "href": "/files-fastq/4DNFIBANC17L/@@download/4DNFIBANC17L.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIYEL2EAE/", "paired_end": "2", "uuid": "6bc980f0-8844-4a65-9150-0f1046b605c5", "display_title": "4DNFIYEL2EAE.fastq.gz", "accession": "4DNFIYEL2EAE", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3ef8060d-fe9b-452b-ab80-0fc71d93c0a4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3ef8060d-fe9b-452b-ab80-0fc71d93c0a4", "Total Sequences": 4981209, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBANC17L/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 455826998, "@type": ["FileFastq", "File", "Item"], "upload_key": "e85fd4b1-a63d-4ade-b351-b18bfc9dfcf8/4DNFIRO26OB3.fastq.gz", "@id": "/files-fastq/4DNFIRO26OB3/", "md5sum": "8fc71a716e7f3737967f02c3fe1bc727", "uuid": "e85fd4b1-a63d-4ade-b351-b18bfc9dfcf8", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIRO26OB3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e85fd4b1-a63d-4ade-b351-b18bfc9dfcf8/4DNFIRO26OB3.fastq.gz", "accession": "4DNFIRO26OB3", "href": "/files-fastq/4DNFIRO26OB3/@@download/4DNFIRO26OB3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFICYXOFNZ/", "paired_end": "2", "uuid": "be858359-511b-4ce4-b520-4f1cd8d0fb11", "display_title": "4DNFICYXOFNZ.fastq.gz", "accession": "4DNFICYXOFNZ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/30376d09-47b4-448f-a137-33b32e32c037/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "30376d09-47b4-448f-a137-33b32e32c037", "Total Sequences": 8349690, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRO26OB3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 452739655, "@type": ["FileFastq", "File", "Item"], "upload_key": "d0e34a6b-e1f8-466b-b171-72e27dec18bf/4DNFIK47VJPH.fastq.gz", "@id": "/files-fastq/4DNFIK47VJPH/", "md5sum": "f03ca60fd282e43a1d42326fedc2054d", "uuid": "d0e34a6b-e1f8-466b-b171-72e27dec18bf", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIK47VJPH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d0e34a6b-e1f8-466b-b171-72e27dec18bf/4DNFIK47VJPH.fastq.gz", "accession": "4DNFIK47VJPH", "href": "/files-fastq/4DNFIK47VJPH/@@download/4DNFIK47VJPH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI624S4MN/", "paired_end": "2", "uuid": "15fe4ad8-e0b2-4463-891d-31db323976b7", "display_title": "4DNFI624S4MN.fastq.gz", "accession": "4DNFI624S4MN", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9ae5909a-e956-4be6-87f7-7a4abec391ff/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9ae5909a-e956-4be6-87f7-7a4abec391ff", "Total Sequences": 8088764, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK47VJPH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 422501682, "@type": ["FileFastq", "File", "Item"], "upload_key": "4c433365-a42d-4295-b37d-b127cf3a293f/4DNFI6SLMPKG.fastq.gz", "@id": "/files-fastq/4DNFI6SLMPKG/", "md5sum": "99cdcbfed9291267049f5acfd33a4565", "uuid": "4c433365-a42d-4295-b37d-b127cf3a293f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI6SLMPKG.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4c433365-a42d-4295-b37d-b127cf3a293f/4DNFI6SLMPKG.fastq.gz", "accession": "4DNFI6SLMPKG", "href": "/files-fastq/4DNFI6SLMPKG/@@download/4DNFI6SLMPKG.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIWMTF7LH/", "paired_end": "2", "uuid": "c6ed7037-db04-4e56-877b-9f2791071a91", "display_title": "4DNFIWMTF7LH.fastq.gz", "accession": "4DNFIWMTF7LH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f9588084-175a-4742-8ee5-00da8f4a8463/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f9588084-175a-4742-8ee5-00da8f4a8463", "Total Sequences": 7685108, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6SLMPKG/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 854207493, "@type": ["FileFastq", "File", "Item"], "upload_key": "5c93258a-619a-4699-8656-e711b3c9354d/4DNFI89IZLP3.fastq.gz", "@id": "/files-fastq/4DNFI89IZLP3/", "md5sum": "901d22002fbea016c3cc5f4956e41c6b", "uuid": "5c93258a-619a-4699-8656-e711b3c9354d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI89IZLP3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5c93258a-619a-4699-8656-e711b3c9354d/4DNFI89IZLP3.fastq.gz", "accession": "4DNFI89IZLP3", "href": "/files-fastq/4DNFI89IZLP3/@@download/4DNFI89IZLP3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIGXR92HN/", "paired_end": "2", "uuid": "3808dfd1-474d-4e38-8f45-f25393fcc2f2", "display_title": "4DNFIGXR92HN.fastq.gz", "accession": "4DNFIGXR92HN", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/ebba6fdb-9f60-4bf4-91ce-fd3f77ddf1dc/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "ebba6fdb-9f60-4bf4-91ce-fd3f77ddf1dc", "Total Sequences": 15449010, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI89IZLP3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 931561872, "@type": ["FileFastq", "File", "Item"], "upload_key": "a9815da4-2b2a-46c5-85fe-26f28ee840f7/4DNFIT8XS62Z.fastq.gz", "@id": "/files-fastq/4DNFIT8XS62Z/", "md5sum": "9ea71c33a8abc41b90c4dbd0f58b1c36", "uuid": "a9815da4-2b2a-46c5-85fe-26f28ee840f7", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIT8XS62Z.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a9815da4-2b2a-46c5-85fe-26f28ee840f7/4DNFIT8XS62Z.fastq.gz", "accession": "4DNFIT8XS62Z", "href": "/files-fastq/4DNFIT8XS62Z/@@download/4DNFIT8XS62Z.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFILWMVDG5/", "paired_end": "2", "uuid": "7f0e0fe8-7471-4ad2-9d21-2ff98ab01d2a", "display_title": "4DNFILWMVDG5.fastq.gz", "accession": "4DNFILWMVDG5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2d3753c4-dc76-48fb-80d7-f5c522995a57/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2d3753c4-dc76-48fb-80d7-f5c522995a57", "Total Sequences": 17036224, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT8XS62Z/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 917592218, "@type": ["FileFastq", "File", "Item"], "upload_key": "1653a5d5-7f34-4fdc-a23e-664d05b3d938/4DNFIZ7NHARU.fastq.gz", "@id": "/files-fastq/4DNFIZ7NHARU/", "md5sum": "ecda1f9b275a1fb0b72efb1798acda1e", "uuid": "1653a5d5-7f34-4fdc-a23e-664d05b3d938", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIZ7NHARU.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1653a5d5-7f34-4fdc-a23e-664d05b3d938/4DNFIZ7NHARU.fastq.gz", "accession": "4DNFIZ7NHARU", "href": "/files-fastq/4DNFIZ7NHARU/@@download/4DNFIZ7NHARU.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI9VMSV4Z/", "paired_end": "2", "uuid": "fed02d99-9a63-4e87-b910-0fc40a49639e", "display_title": "4DNFI9VMSV4Z.fastq.gz", "accession": "4DNFI9VMSV4Z", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4c91da36-5a38-4b52-985d-20dd8043fab9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4c91da36-5a38-4b52-985d-20dd8043fab9", "Total Sequences": 16344151, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZ7NHARU/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 980730227, "@type": ["FileFastq", "File", "Item"], "upload_key": "39c34796-e6ce-428e-914e-c85115ef68b6/4DNFI976FG5K.fastq.gz", "@id": "/files-fastq/4DNFI976FG5K/", "md5sum": "d5a38218a95e85c471ea0fb0fa847cd4", "uuid": "39c34796-e6ce-428e-914e-c85115ef68b6", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI976FG5K.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/39c34796-e6ce-428e-914e-c85115ef68b6/4DNFI976FG5K.fastq.gz", "accession": "4DNFI976FG5K", "href": "/files-fastq/4DNFI976FG5K/@@download/4DNFI976FG5K.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI75X13Y4/", "paired_end": "2", "uuid": "358f14f0-fdd8-4e90-9f50-dc6f904f951e", "display_title": "4DNFI75X13Y4.fastq.gz", "accession": "4DNFI75X13Y4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/04edd1cf-40de-4404-9be8-a9e1afcda257/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "04edd1cf-40de-4404-9be8-a9e1afcda257", "Total Sequences": 17975897, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI976FG5K/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1026242693, "@type": ["FileFastq", "File", "Item"], "upload_key": "0c0e3aac-45c8-4bf0-8876-45b06a1f7d6b/4DNFIRQO2SXH.fastq.gz", "@id": "/files-fastq/4DNFIRQO2SXH/", "md5sum": "2393ff3cbcdd1eba0fcfd5b2d5578dbc", "uuid": "0c0e3aac-45c8-4bf0-8876-45b06a1f7d6b", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIRQO2SXH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c0e3aac-45c8-4bf0-8876-45b06a1f7d6b/4DNFIRQO2SXH.fastq.gz", "accession": "4DNFIRQO2SXH", "href": "/files-fastq/4DNFIRQO2SXH/@@download/4DNFIRQO2SXH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIKYKRIQL/", "paired_end": "2", "uuid": "000b875c-0b5a-40d4-ac5e-9b0740076e70", "display_title": "4DNFIKYKRIQL.fastq.gz", "accession": "4DNFIKYKRIQL", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/0ac16caa-3143-4c8b-8f53-3a6abaab7988/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "0ac16caa-3143-4c8b-8f53-3a6abaab7988", "Total Sequences": 18471370, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRQO2SXH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 749036743, "@type": ["FileFastq", "File", "Item"], "upload_key": "a5c0a84a-b209-4d43-a367-8dfb9072f2ce/4DNFI8MJLI24.fastq.gz", "@id": "/files-fastq/4DNFI8MJLI24/", "md5sum": "355be650a513ed06ea178746e6596bfa", "uuid": "a5c0a84a-b209-4d43-a367-8dfb9072f2ce", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI8MJLI24.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a5c0a84a-b209-4d43-a367-8dfb9072f2ce/4DNFI8MJLI24.fastq.gz", "accession": "4DNFI8MJLI24", "href": "/files-fastq/4DNFI8MJLI24/@@download/4DNFI8MJLI24.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUQNIAVM/", "paired_end": "2", "uuid": "f899e7c7-ab47-4382-a689-2b0b20652c3b", "display_title": "4DNFIUQNIAVM.fastq.gz", "accession": "4DNFIUQNIAVM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d2d09f24-f2cb-4f94-9d25-c25dcd9a93f9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d2d09f24-f2cb-4f94-9d25-c25dcd9a93f9", "Total Sequences": 13758244, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8MJLI24/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 295303025, "@type": ["FileFastq", "File", "Item"], "upload_key": "fd10bfcc-f488-4bc5-b739-3c9114d09c0e/4DNFIQKZ4DEV.fastq.gz", "@id": "/files-fastq/4DNFIQKZ4DEV/", "md5sum": "c44d506b6acee37f5d2989b5f5b045e2", "uuid": "fd10bfcc-f488-4bc5-b739-3c9114d09c0e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIQKZ4DEV.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fd10bfcc-f488-4bc5-b739-3c9114d09c0e/4DNFIQKZ4DEV.fastq.gz", "accession": "4DNFIQKZ4DEV", "href": "/files-fastq/4DNFIQKZ4DEV/@@download/4DNFIQKZ4DEV.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINBOYE79/", "paired_end": "2", "uuid": "58fc77dd-7ebf-49a0-b249-d2a80f0fa5ae", "display_title": "4DNFINBOYE79.fastq.gz", "accession": "4DNFINBOYE79", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8ba24961-4614-4fce-93d5-e585f1779c40/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8ba24961-4614-4fce-93d5-e585f1779c40", "Total Sequences": 5413629, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQKZ4DEV/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 771772698, "@type": ["FileFastq", "File", "Item"], "upload_key": "ee879220-6617-4d27-8686-df2a72404fde/4DNFI4SPFM5N.fastq.gz", "@id": "/files-fastq/4DNFI4SPFM5N/", "md5sum": "d98254a8f7f9cb36cbee491795d9b232", "uuid": "ee879220-6617-4d27-8686-df2a72404fde", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI4SPFM5N.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ee879220-6617-4d27-8686-df2a72404fde/4DNFI4SPFM5N.fastq.gz", "accession": "4DNFI4SPFM5N", "href": "/files-fastq/4DNFI4SPFM5N/@@download/4DNFI4SPFM5N.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6HWSW36/", "paired_end": "2", "uuid": "faed5e2c-fee9-469d-af66-33b8af22130e", "display_title": "4DNFI6HWSW36.fastq.gz", "accession": "4DNFI6HWSW36", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d88a1d91-ffd3-4fff-8f11-ccd0f028f352/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d88a1d91-ffd3-4fff-8f11-ccd0f028f352", "Total Sequences": 13986809, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4SPFM5N/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 739098325, "@type": ["FileFastq", "File", "Item"], "upload_key": "f92aa915-c2b6-48bf-901b-42a4fafb1def/4DNFI91J78V6.fastq.gz", "@id": "/files-fastq/4DNFI91J78V6/", "md5sum": "40e67bce7c58ef2cb3aa04493509bd81", "uuid": "f92aa915-c2b6-48bf-901b-42a4fafb1def", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI91J78V6.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f92aa915-c2b6-48bf-901b-42a4fafb1def/4DNFI91J78V6.fastq.gz", "accession": "4DNFI91J78V6", "href": "/files-fastq/4DNFI91J78V6/@@download/4DNFI91J78V6.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPCTTKNW/", "paired_end": "2", "uuid": "2c1ab810-d9b7-454f-9273-3ea793bd6bdb", "display_title": "4DNFIPCTTKNW.fastq.gz", "accession": "4DNFIPCTTKNW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6009bb57-2a6d-4868-adf7-95792e2453c5/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6009bb57-2a6d-4868-adf7-95792e2453c5", "Total Sequences": 13477824, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI91J78V6/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 867570556, "@type": ["FileFastq", "File", "Item"], "upload_key": "4b1c208d-3144-4561-956f-9ab0e8bdbcee/4DNFIYBLVKBA.fastq.gz", "@id": "/files-fastq/4DNFIYBLVKBA/", "md5sum": "d763ee4af6367b3df0d583823eb64788", "uuid": "4b1c208d-3144-4561-956f-9ab0e8bdbcee", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIYBLVKBA.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4b1c208d-3144-4561-956f-9ab0e8bdbcee/4DNFIYBLVKBA.fastq.gz", "accession": "4DNFIYBLVKBA", "href": "/files-fastq/4DNFIYBLVKBA/@@download/4DNFIYBLVKBA.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI45S96QI/", "paired_end": "2", "uuid": "a895e2f3-d5ea-4a3e-97f0-8f90ed74561b", "display_title": "4DNFI45S96QI.fastq.gz", "accession": "4DNFI45S96QI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4b9631a3-4275-4899-88d3-94c313126d26/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4b9631a3-4275-4899-88d3-94c313126d26", "Total Sequences": 15845914, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYBLVKBA/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 517367184, "@type": ["FileFastq", "File", "Item"], "upload_key": "36a615b8-47fc-4cc1-b4c8-2ab616557593/4DNFIUR4VCOJ.fastq.gz", "@id": "/files-fastq/4DNFIUR4VCOJ/", "md5sum": "526df657f9224d36de2de8ada5790b54", "uuid": "36a615b8-47fc-4cc1-b4c8-2ab616557593", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIUR4VCOJ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/36a615b8-47fc-4cc1-b4c8-2ab616557593/4DNFIUR4VCOJ.fastq.gz", "accession": "4DNFIUR4VCOJ", "href": "/files-fastq/4DNFIUR4VCOJ/@@download/4DNFIUR4VCOJ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFICIZKG5B/", "paired_end": "2", "uuid": "37359b07-41a1-496d-92fe-6b16517c4114", "display_title": "4DNFICIZKG5B.fastq.gz", "accession": "4DNFICIZKG5B", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/437b4ff9-e702-4783-8d7e-15ca98432a70/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "437b4ff9-e702-4783-8d7e-15ca98432a70", "Total Sequences": 9320894, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUR4VCOJ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 634062404, "@type": ["FileFastq", "File", "Item"], "upload_key": "4a6b9749-59e3-44c4-ac8e-1f90ac83aa94/4DNFIMOD1ZGL.fastq.gz", "@id": "/files-fastq/4DNFIMOD1ZGL/", "md5sum": "d7c18eb2097261dc867c6f2f41b94cd4", "uuid": "4a6b9749-59e3-44c4-ac8e-1f90ac83aa94", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIMOD1ZGL.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4a6b9749-59e3-44c4-ac8e-1f90ac83aa94/4DNFIMOD1ZGL.fastq.gz", "accession": "4DNFIMOD1ZGL", "href": "/files-fastq/4DNFIMOD1ZGL/@@download/4DNFIMOD1ZGL.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI81CZU6M/", "paired_end": "2", "uuid": "a5b212fd-659e-4414-a72c-7d2bbf6a4dc9", "display_title": "4DNFI81CZU6M.fastq.gz", "accession": "4DNFI81CZU6M", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b74766d9-6aeb-4650-bed0-be14fef0c68e/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b74766d9-6aeb-4650-bed0-be14fef0c68e", "Total Sequences": 11579879, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMOD1ZGL/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 539856471, "@type": ["FileFastq", "File", "Item"], "upload_key": "ac978af9-171b-47cc-abd1-b3fb2d0a3a65/4DNFIOLQDEXE.fastq.gz", "@id": "/files-fastq/4DNFIOLQDEXE/", "md5sum": "9c4f83e208098af7d7712fcbc6823c13", "uuid": "ac978af9-171b-47cc-abd1-b3fb2d0a3a65", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIOLQDEXE.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ac978af9-171b-47cc-abd1-b3fb2d0a3a65/4DNFIOLQDEXE.fastq.gz", "accession": "4DNFIOLQDEXE", "href": "/files-fastq/4DNFIOLQDEXE/@@download/4DNFIOLQDEXE.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4L1JFP5/", "paired_end": "2", "uuid": "4aaadfcb-bfe2-4f95-b05d-1bff64bceffa", "display_title": "4DNFI4L1JFP5.fastq.gz", "accession": "4DNFI4L1JFP5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a8987867-7732-4139-ae39-d0118aaf5bb1/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a8987867-7732-4139-ae39-d0118aaf5bb1", "Total Sequences": 9723439, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOLQDEXE/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 664307606, "@type": ["FileFastq", "File", "Item"], "upload_key": "1be75b4b-fef2-48bb-bc3b-353ea1241568/4DNFID4RLOIZ.fastq.gz", "@id": "/files-fastq/4DNFID4RLOIZ/", "md5sum": "4a7dd3e5123653a91b24277582cf34e4", "uuid": "1be75b4b-fef2-48bb-bc3b-353ea1241568", "paired_end": "1", "file_type": "reads", "display_title": "4DNFID4RLOIZ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1be75b4b-fef2-48bb-bc3b-353ea1241568/4DNFID4RLOIZ.fastq.gz", "accession": "4DNFID4RLOIZ", "href": "/files-fastq/4DNFID4RLOIZ/@@download/4DNFID4RLOIZ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4SZIPHI/", "paired_end": "2", "uuid": "705a0bf3-96ab-4078-bb01-1d822bd81c18", "display_title": "4DNFI4SZIPHI.fastq.gz", "accession": "4DNFI4SZIPHI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/04bf0bde-244d-431f-b82e-f44c5884e04c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "04bf0bde-244d-431f-b82e-f44c5884e04c", "Total Sequences": 12078696, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFID4RLOIZ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 944150259, "@type": ["FileFastq", "File", "Item"], "upload_key": "6208133b-fc28-4845-84b7-9685efc9da04/4DNFI8P6QFAH.fastq.gz", "@id": "/files-fastq/4DNFI8P6QFAH/", "md5sum": "7133ceaf26f8c50c250436b1f1377963", "uuid": "6208133b-fc28-4845-84b7-9685efc9da04", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI8P6QFAH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6208133b-fc28-4845-84b7-9685efc9da04/4DNFI8P6QFAH.fastq.gz", "accession": "4DNFI8P6QFAH", "href": "/files-fastq/4DNFI8P6QFAH/@@download/4DNFI8P6QFAH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIKDXMRSU/", "paired_end": "2", "uuid": "d5743c18-67d3-412d-aa24-cb8774ecf43b", "display_title": "4DNFIKDXMRSU.fastq.gz", "accession": "4DNFIKDXMRSU", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c37e44f3-88dd-441f-956a-82269fb71624/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c37e44f3-88dd-441f-956a-82269fb71624", "Total Sequences": 16670899, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8P6QFAH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 827868490, "@type": ["FileFastq", "File", "Item"], "upload_key": "08b9d594-4d42-4cf8-8223-76c930a5b0bc/4DNFIBH2LK6P.fastq.gz", "@id": "/files-fastq/4DNFIBH2LK6P/", "md5sum": "f7651d5c297c0d1925970644446a1240", "uuid": "08b9d594-4d42-4cf8-8223-76c930a5b0bc", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIBH2LK6P.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/08b9d594-4d42-4cf8-8223-76c930a5b0bc/4DNFIBH2LK6P.fastq.gz", "accession": "4DNFIBH2LK6P", "href": "/files-fastq/4DNFIBH2LK6P/@@download/4DNFIBH2LK6P.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUKUC2F1/", "paired_end": "2", "uuid": "a9b92fa4-9d0c-4df2-b7be-5a68d45bc2f2", "display_title": "4DNFIUKUC2F1.fastq.gz", "accession": "4DNFIUKUC2F1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1ea80fa0-0c68-4b29-acd7-a196af98f5de/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1ea80fa0-0c68-4b29-acd7-a196af98f5de", "Total Sequences": 15100100, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBH2LK6P/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 900826518, "@type": ["FileFastq", "File", "Item"], "upload_key": "93104856-1bb8-47d5-bdbc-964e5a7157ca/4DNFIAW3CFLX.fastq.gz", "@id": "/files-fastq/4DNFIAW3CFLX/", "md5sum": "2eddadc391c58cdd5e1ff9b0df191564", "uuid": "93104856-1bb8-47d5-bdbc-964e5a7157ca", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIAW3CFLX.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/93104856-1bb8-47d5-bdbc-964e5a7157ca/4DNFIAW3CFLX.fastq.gz", "accession": "4DNFIAW3CFLX", "href": "/files-fastq/4DNFIAW3CFLX/@@download/4DNFIAW3CFLX.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFID8XMZPQ/", "paired_end": "2", "uuid": "1492f0c1-86ac-4029-9a21-27ce3752408b", "display_title": "4DNFID8XMZPQ.fastq.gz", "accession": "4DNFID8XMZPQ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/41dd3619-f244-47b5-afd1-901fc28998fe/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "41dd3619-f244-47b5-afd1-901fc28998fe", "Total Sequences": 16176916, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAW3CFLX/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 800909660, "@type": ["FileFastq", "File", "Item"], "upload_key": "3021bb03-6bd4-42df-babf-3a949365caed/4DNFIN2YORBI.fastq.gz", "@id": "/files-fastq/4DNFIN2YORBI/", "md5sum": "9a84674edb1ee98192544d8034c05a24", "uuid": "3021bb03-6bd4-42df-babf-3a949365caed", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIN2YORBI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3021bb03-6bd4-42df-babf-3a949365caed/4DNFIN2YORBI.fastq.gz", "accession": "4DNFIN2YORBI", "href": "/files-fastq/4DNFIN2YORBI/@@download/4DNFIN2YORBI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPOROHBK/", "paired_end": "2", "uuid": "ea9ab621-93ae-4cbe-8570-3d968dda9979", "display_title": "4DNFIPOROHBK.fastq.gz", "accession": "4DNFIPOROHBK", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/cd133d8c-c9aa-401a-9128-2f1bd4544a89/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "cd133d8c-c9aa-401a-9128-2f1bd4544a89", "Total Sequences": 14233696, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIN2YORBI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 855869112, "@type": ["FileFastq", "File", "Item"], "upload_key": "909bd70d-b510-4d5d-b09d-95db685f5958/4DNFIQ414RFM.fastq.gz", "@id": "/files-fastq/4DNFIQ414RFM/", "md5sum": "6c36e4e598517c76e121db0b2c53ee77", "uuid": "909bd70d-b510-4d5d-b09d-95db685f5958", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIQ414RFM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/909bd70d-b510-4d5d-b09d-95db685f5958/4DNFIQ414RFM.fastq.gz", "accession": "4DNFIQ414RFM", "href": "/files-fastq/4DNFIQ414RFM/@@download/4DNFIQ414RFM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIX6RUI36/", "paired_end": "2", "uuid": "f17f3b40-2cf0-4072-82b1-7819c8df67ff", "display_title": "4DNFIX6RUI36.fastq.gz", "accession": "4DNFIX6RUI36", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1d61262f-9eac-4654-95f6-da0fa1749f65/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1d61262f-9eac-4654-95f6-da0fa1749f65", "Total Sequences": 15602159, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQ414RFM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 725359308, "@type": ["FileFastq", "File", "Item"], "upload_key": "2f9e6d6d-b96c-4629-9716-06c1d7ddafdd/4DNFI29BBHCV.fastq.gz", "@id": "/files-fastq/4DNFI29BBHCV/", "md5sum": "4421e741918adc20e52f7a3d917d4911", "uuid": "2f9e6d6d-b96c-4629-9716-06c1d7ddafdd", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI29BBHCV.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2f9e6d6d-b96c-4629-9716-06c1d7ddafdd/4DNFI29BBHCV.fastq.gz", "accession": "4DNFI29BBHCV", "href": "/files-fastq/4DNFI29BBHCV/@@download/4DNFI29BBHCV.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIAP3Q9O8/", "paired_end": "2", "uuid": "727adcd3-771b-4acb-a5cd-08d8ff864859", "display_title": "4DNFIAP3Q9O8.fastq.gz", "accession": "4DNFIAP3Q9O8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3b560c43-db56-4167-929a-9bfcfb30e5af/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3b560c43-db56-4167-929a-9bfcfb30e5af", "Total Sequences": 13258763, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI29BBHCV/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 903756727, "@type": ["FileFastq", "File", "Item"], "upload_key": "baaa260c-46e5-490a-9311-1ba0315d06cb/4DNFIQBBOXAB.fastq.gz", "@id": "/files-fastq/4DNFIQBBOXAB/", "md5sum": "8d159091e7056e76f219d925fe6827e8", "uuid": "baaa260c-46e5-490a-9311-1ba0315d06cb", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIQBBOXAB.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/baaa260c-46e5-490a-9311-1ba0315d06cb/4DNFIQBBOXAB.fastq.gz", "accession": "4DNFIQBBOXAB", "href": "/files-fastq/4DNFIQBBOXAB/@@download/4DNFIQBBOXAB.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIT4Q2HO6/", "paired_end": "2", "uuid": "b85cd69f-a5af-42e6-a8b2-9c9cb24520c0", "display_title": "4DNFIT4Q2HO6.fastq.gz", "accession": "4DNFIT4Q2HO6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/82f92b2d-1f8a-4f81-9faf-2f4869525386/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "82f92b2d-1f8a-4f81-9faf-2f4869525386", "Total Sequences": 16556973, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQBBOXAB/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 275237437, "@type": ["FileFastq", "File", "Item"], "upload_key": "07a14391-6f5c-406c-b80b-d86f0ab3c403/4DNFIVKT91BY.fastq.gz", "@id": "/files-fastq/4DNFIVKT91BY/", "md5sum": "78491bb309bc2f9ed4e876a605a5d6e5", "uuid": "07a14391-6f5c-406c-b80b-d86f0ab3c403", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIVKT91BY.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/07a14391-6f5c-406c-b80b-d86f0ab3c403/4DNFIVKT91BY.fastq.gz", "accession": "4DNFIVKT91BY", "href": "/files-fastq/4DNFIVKT91BY/@@download/4DNFIVKT91BY.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISAZ11UT/", "paired_end": "2", "uuid": "b02e809f-65dd-47ed-890b-f078cccb9189", "display_title": "4DNFISAZ11UT.fastq.gz", "accession": "4DNFISAZ11UT", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/fc2d5ebf-60b9-4072-9828-edceeadc8b17/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "fc2d5ebf-60b9-4072-9828-edceeadc8b17", "Total Sequences": 5044870, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVKT91BY/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 481625739, "@type": ["FileFastq", "File", "Item"], "upload_key": "71dfaa51-1101-4118-a5e0-042b008c6598/4DNFI41RRMFW.fastq.gz", "@id": "/files-fastq/4DNFI41RRMFW/", "md5sum": "0ccfb0e17113eaf112330758680f07bf", "uuid": "71dfaa51-1101-4118-a5e0-042b008c6598", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI41RRMFW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/71dfaa51-1101-4118-a5e0-042b008c6598/4DNFI41RRMFW.fastq.gz", "accession": "4DNFI41RRMFW", "href": "/files-fastq/4DNFI41RRMFW/@@download/4DNFI41RRMFW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIYXX5XOA/", "paired_end": "2", "uuid": "f7ef771f-5509-4d2d-a916-43234e5e25df", "display_title": "4DNFIYXX5XOA.fastq.gz", "accession": "4DNFIYXX5XOA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1e3f298c-28e1-40fb-b55f-27789467b8a6/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1e3f298c-28e1-40fb-b55f-27789467b8a6", "Total Sequences": 8723597, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI41RRMFW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 865546544, "@type": ["FileFastq", "File", "Item"], "upload_key": "ebeeb067-9845-40d1-8400-3e6a2ef8c4e4/4DNFISJLJIAM.fastq.gz", "@id": "/files-fastq/4DNFISJLJIAM/", "md5sum": "3bf369dfd0974f12a4b4ea4841784756", "uuid": "ebeeb067-9845-40d1-8400-3e6a2ef8c4e4", "paired_end": "1", "file_type": "reads", "display_title": "4DNFISJLJIAM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ebeeb067-9845-40d1-8400-3e6a2ef8c4e4/4DNFISJLJIAM.fastq.gz", "accession": "4DNFISJLJIAM", "href": "/files-fastq/4DNFISJLJIAM/@@download/4DNFISJLJIAM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINBT6ZEK/", "paired_end": "2", "uuid": "fe2829a5-949c-4a71-bf00-9f1b221aa926", "display_title": "4DNFINBT6ZEK.fastq.gz", "accession": "4DNFINBT6ZEK", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f2141e58-a077-4e1e-8e01-e8c69a5ae785/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f2141e58-a077-4e1e-8e01-e8c69a5ae785", "Total Sequences": 15960205, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISJLJIAM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 509037763, "@type": ["FileFastq", "File", "Item"], "upload_key": "358dea80-77b7-4f28-9c48-384e69f825cf/4DNFI7VZ91E2.fastq.gz", "@id": "/files-fastq/4DNFI7VZ91E2/", "md5sum": "ef82f8b9aa5433a1fd02cbe1480e8307", "uuid": "358dea80-77b7-4f28-9c48-384e69f825cf", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI7VZ91E2.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/358dea80-77b7-4f28-9c48-384e69f825cf/4DNFI7VZ91E2.fastq.gz", "accession": "4DNFI7VZ91E2", "href": "/files-fastq/4DNFI7VZ91E2/@@download/4DNFI7VZ91E2.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIZXX9A5O/", "paired_end": "2", "uuid": "bb90af39-ca92-4a1f-849b-e65b5b83a3aa", "display_title": "4DNFIZXX9A5O.fastq.gz", "accession": "4DNFIZXX9A5O", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/5bdcddac-819f-4ab0-a9b3-5e8d5bc5383d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "5bdcddac-819f-4ab0-a9b3-5e8d5bc5383d", "Total Sequences": 9247145, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7VZ91E2/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 629560513, "@type": ["FileFastq", "File", "Item"], "upload_key": "613a6abf-a3db-42a8-949d-799008f08016/4DNFIPY3UHP3.fastq.gz", "@id": "/files-fastq/4DNFIPY3UHP3/", "md5sum": "00bc32f6ab31a558aa92710a00f633d7", "uuid": "613a6abf-a3db-42a8-949d-799008f08016", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIPY3UHP3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/613a6abf-a3db-42a8-949d-799008f08016/4DNFIPY3UHP3.fastq.gz", "accession": "4DNFIPY3UHP3", "href": "/files-fastq/4DNFIPY3UHP3/@@download/4DNFIPY3UHP3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXQB3TV2/", "paired_end": "2", "uuid": "a3a2a92d-a5ba-4836-b5e1-f61968faf1e4", "display_title": "4DNFIXQB3TV2.fastq.gz", "accession": "4DNFIXQB3TV2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6bf61b97-58b0-46ad-ad64-260e25030413/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6bf61b97-58b0-46ad-ad64-260e25030413", "Total Sequences": 11499139, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPY3UHP3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 507529857, "@type": ["FileFastq", "File", "Item"], "upload_key": "a12b00bb-9947-4b08-ad59-a29687d14f58/4DNFIDZC7X68.fastq.gz", "@id": "/files-fastq/4DNFIDZC7X68/", "md5sum": "f5d789a0974a1db823fba02696fb3b0c", "uuid": "a12b00bb-9947-4b08-ad59-a29687d14f58", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIDZC7X68.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a12b00bb-9947-4b08-ad59-a29687d14f58/4DNFIDZC7X68.fastq.gz", "accession": "4DNFIDZC7X68", "href": "/files-fastq/4DNFIDZC7X68/@@download/4DNFIDZC7X68.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIGT2NJEA/", "paired_end": "2", "uuid": "0a6271d5-4488-4502-a132-2d6c9f3d3162", "display_title": "4DNFIGT2NJEA.fastq.gz", "accession": "4DNFIGT2NJEA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b65e33c2-28b4-4962-bb3d-991f6c711817/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b65e33c2-28b4-4962-bb3d-991f6c711817", "Total Sequences": 9084226, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDZC7X68/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1031788012, "@type": ["FileFastq", "File", "Item"], "upload_key": "5ebe6c0f-1a35-4c03-b00a-98476a9bf23d/4DNFIHQTKGMW.fastq.gz", "@id": "/files-fastq/4DNFIHQTKGMW/", "md5sum": "c60bdd754553841bd35388bce2061c38", "uuid": "5ebe6c0f-1a35-4c03-b00a-98476a9bf23d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIHQTKGMW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5ebe6c0f-1a35-4c03-b00a-98476a9bf23d/4DNFIHQTKGMW.fastq.gz", "accession": "4DNFIHQTKGMW", "href": "/files-fastq/4DNFIHQTKGMW/@@download/4DNFIHQTKGMW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQQOOHV5/", "paired_end": "2", "uuid": "81611f4e-50c1-4255-8363-c8b983a089f3", "display_title": "4DNFIQQOOHV5.fastq.gz", "accession": "4DNFIQQOOHV5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1e40d246-96e4-4097-82b1-88c3a7f0072c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1e40d246-96e4-4097-82b1-88c3a7f0072c", "Total Sequences": 18902935, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHQTKGMW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 553089549, "@type": ["FileFastq", "File", "Item"], "upload_key": "64b88f75-4725-47f1-b185-9a7e317fff8b/4DNFILNJYYKG.fastq.gz", "@id": "/files-fastq/4DNFILNJYYKG/", "md5sum": "e379d1741b83932c5c4239a63a22f58a", "uuid": "64b88f75-4725-47f1-b185-9a7e317fff8b", "paired_end": "1", "file_type": "reads", "display_title": "4DNFILNJYYKG.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/64b88f75-4725-47f1-b185-9a7e317fff8b/4DNFILNJYYKG.fastq.gz", "accession": "4DNFILNJYYKG", "href": "/files-fastq/4DNFILNJYYKG/@@download/4DNFILNJYYKG.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI5BL92MC/", "paired_end": "2", "uuid": "2eab08e5-9b08-40c2-8f8f-c8ecea5b30a3", "display_title": "4DNFI5BL92MC.fastq.gz", "accession": "4DNFI5BL92MC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b8957906-28bb-476b-ba80-f0487c8d0052/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b8957906-28bb-476b-ba80-f0487c8d0052", "Total Sequences": 10003148, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILNJYYKG/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 719628940, "@type": ["FileFastq", "File", "Item"], "upload_key": "accdbf67-6f08-4e43-82d6-176d88ea7ed9/4DNFIPVWGK7P.fastq.gz", "@id": "/files-fastq/4DNFIPVWGK7P/", "md5sum": "1a155856d7bae8cb1bdd7121350adfbf", "uuid": "accdbf67-6f08-4e43-82d6-176d88ea7ed9", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIPVWGK7P.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/accdbf67-6f08-4e43-82d6-176d88ea7ed9/4DNFIPVWGK7P.fastq.gz", "accession": "4DNFIPVWGK7P", "href": "/files-fastq/4DNFIPVWGK7P/@@download/4DNFIPVWGK7P.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIMESNLX6/", "paired_end": "2", "uuid": "1f847aba-2e1d-4bcc-99f6-b3cf6407737c", "display_title": "4DNFIMESNLX6.fastq.gz", "accession": "4DNFIMESNLX6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/cd08e8e9-7727-4ce8-9b57-ad8b37570cc4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "cd08e8e9-7727-4ce8-9b57-ad8b37570cc4", "Total Sequences": 13124740, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPVWGK7P/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 829868748, "@type": ["FileFastq", "File", "Item"], "upload_key": "40d91afa-118e-494a-9387-fbb4b08446e7/4DNFITHDMBDH.fastq.gz", "@id": "/files-fastq/4DNFITHDMBDH/", "md5sum": "cbfd138762ab02601d6e0d9887843c2c", "uuid": "40d91afa-118e-494a-9387-fbb4b08446e7", "paired_end": "1", "file_type": "reads", "display_title": "4DNFITHDMBDH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/40d91afa-118e-494a-9387-fbb4b08446e7/4DNFITHDMBDH.fastq.gz", "accession": "4DNFITHDMBDH", "href": "/files-fastq/4DNFITHDMBDH/@@download/4DNFITHDMBDH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIIZA5RW2/", "paired_end": "2", "uuid": "1e3a1718-3650-4e82-847f-2e744020d7e7", "display_title": "4DNFIIZA5RW2.fastq.gz", "accession": "4DNFIIZA5RW2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4f1fc8e8-3c1a-40c1-8983-135b0c7b8c23/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4f1fc8e8-3c1a-40c1-8983-135b0c7b8c23", "Total Sequences": 15192739, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITHDMBDH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 619122387, "@type": ["FileFastq", "File", "Item"], "upload_key": "ec627d6a-850a-4d0e-991c-7c96af93fe41/4DNFIHNPS5DX.fastq.gz", "@id": "/files-fastq/4DNFIHNPS5DX/", "md5sum": "42598b058c79d1b190deca3a8ed0e92c", "uuid": "ec627d6a-850a-4d0e-991c-7c96af93fe41", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIHNPS5DX.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ec627d6a-850a-4d0e-991c-7c96af93fe41/4DNFIHNPS5DX.fastq.gz", "accession": "4DNFIHNPS5DX", "href": "/files-fastq/4DNFIHNPS5DX/@@download/4DNFIHNPS5DX.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBWCH8X8/", "paired_end": "2", "uuid": "e50f8e21-ef6c-4c74-8aa6-b3d28360a36e", "display_title": "4DNFIBWCH8X8.fastq.gz", "accession": "4DNFIBWCH8X8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/39ad2088-52b6-45cd-8ad1-2064d0ba8d0a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "39ad2088-52b6-45cd-8ad1-2064d0ba8d0a", "Total Sequences": 11252163, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHNPS5DX/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 772057026, "@type": ["FileFastq", "File", "Item"], "upload_key": "cb3cfa91-42d2-41c1-abdc-5a3b9e76612e/4DNFIQ8FYDYZ.fastq.gz", "@id": "/files-fastq/4DNFIQ8FYDYZ/", "md5sum": "411e475892b7604a92dd82069764a9c3", "uuid": "cb3cfa91-42d2-41c1-abdc-5a3b9e76612e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIQ8FYDYZ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cb3cfa91-42d2-41c1-abdc-5a3b9e76612e/4DNFIQ8FYDYZ.fastq.gz", "accession": "4DNFIQ8FYDYZ", "href": "/files-fastq/4DNFIQ8FYDYZ/@@download/4DNFIQ8FYDYZ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIX3NAJT8/", "paired_end": "2", "uuid": "d817d092-c5b2-4a69-95e0-eb27e2589df9", "display_title": "4DNFIX3NAJT8.fastq.gz", "accession": "4DNFIX3NAJT8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d5313244-94f5-4117-9290-82aaa9d1e0c5/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d5313244-94f5-4117-9290-82aaa9d1e0c5", "Total Sequences": 14058714, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQ8FYDYZ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1042630775, "@type": ["FileFastq", "File", "Item"], "upload_key": "f312a496-c47b-46a1-b613-b76e7276b824/4DNFI32XG1TD.fastq.gz", "@id": "/files-fastq/4DNFI32XG1TD/", "md5sum": "4084155bb88e1a3ee04c0c574ad97a2a", "uuid": "f312a496-c47b-46a1-b613-b76e7276b824", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI32XG1TD.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f312a496-c47b-46a1-b613-b76e7276b824/4DNFI32XG1TD.fastq.gz", "accession": "4DNFI32XG1TD", "href": "/files-fastq/4DNFI32XG1TD/@@download/4DNFI32XG1TD.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI9G8ZOB9/", "paired_end": "2", "uuid": "5f37cbda-1802-4fb3-8480-3fbb42c87ed4", "display_title": "4DNFI9G8ZOB9.fastq.gz", "accession": "4DNFI9G8ZOB9", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3a828540-beb7-40fd-b92f-9073ed9bff30/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3a828540-beb7-40fd-b92f-9073ed9bff30", "Total Sequences": 19062433, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI32XG1TD/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 678467847, "@type": ["FileFastq", "File", "Item"], "upload_key": "d63d2269-7bf4-4d18-a029-29f2499fc03e/4DNFIKD3W5IS.fastq.gz", "@id": "/files-fastq/4DNFIKD3W5IS/", "md5sum": "a10b554ea889c7e3690a5262d16d01b4", "uuid": "d63d2269-7bf4-4d18-a029-29f2499fc03e", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIKD3W5IS.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d63d2269-7bf4-4d18-a029-29f2499fc03e/4DNFIKD3W5IS.fastq.gz", "accession": "4DNFIKD3W5IS", "href": "/files-fastq/4DNFIKD3W5IS/@@download/4DNFIKD3W5IS.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIITUTFU4/", "paired_end": "2", "uuid": "830d9057-3551-4579-bede-40eb7ee86342", "display_title": "4DNFIITUTFU4.fastq.gz", "accession": "4DNFIITUTFU4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8d658da1-4b8c-479f-a3ca-daa36f38054b/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8d658da1-4b8c-479f-a3ca-daa36f38054b", "Total Sequences": 12250865, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKD3W5IS/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 719127012, "@type": ["FileFastq", "File", "Item"], "upload_key": "41fb567a-7d1c-4fc6-a2d3-af9a6c2c1774/4DNFIC1S9QIQ.fastq.gz", "@id": "/files-fastq/4DNFIC1S9QIQ/", "md5sum": "3c1e8ad72970c8473686505514b90a4a", "uuid": "41fb567a-7d1c-4fc6-a2d3-af9a6c2c1774", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIC1S9QIQ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/41fb567a-7d1c-4fc6-a2d3-af9a6c2c1774/4DNFIC1S9QIQ.fastq.gz", "accession": "4DNFIC1S9QIQ", "href": "/files-fastq/4DNFIC1S9QIQ/@@download/4DNFIC1S9QIQ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4Q37KQ9/", "paired_end": "2", "uuid": "a2d971b9-9aab-47a5-872d-bd6c70d3a7e7", "display_title": "4DNFI4Q37KQ9.fastq.gz", "accession": "4DNFI4Q37KQ9", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6077fd36-0b08-4331-a0e7-d10084ccf67a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6077fd36-0b08-4331-a0e7-d10084ccf67a", "Total Sequences": 12970189, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIC1S9QIQ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 468876741, "@type": ["FileFastq", "File", "Item"], "upload_key": "896e7903-5d3e-44f8-8a2d-c1af3a8a0c02/4DNFI2KXF1UQ.fastq.gz", "@id": "/files-fastq/4DNFI2KXF1UQ/", "md5sum": "3f89d373d14f898d606cbc08dbf99b5d", "uuid": "896e7903-5d3e-44f8-8a2d-c1af3a8a0c02", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI2KXF1UQ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/896e7903-5d3e-44f8-8a2d-c1af3a8a0c02/4DNFI2KXF1UQ.fastq.gz", "accession": "4DNFI2KXF1UQ", "href": "/files-fastq/4DNFI2KXF1UQ/@@download/4DNFI2KXF1UQ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINF5H5O9/", "paired_end": "2", "uuid": "749b5452-4187-426f-87a6-fba66f610176", "display_title": "4DNFINF5H5O9.fastq.gz", "accession": "4DNFINF5H5O9", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c1e77830-79fb-4351-bb06-703ba72ac944/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c1e77830-79fb-4351-bb06-703ba72ac944", "Total Sequences": 7888808, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2KXF1UQ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 590015983, "@type": ["FileFastq", "File", "Item"], "upload_key": "a9a1cff3-dbed-4195-a388-ea008a394acc/4DNFIGV5YDEJ.fastq.gz", "@id": "/files-fastq/4DNFIGV5YDEJ/", "md5sum": "c471d9f8688d71420dea9bdf0c576e7b", "uuid": "a9a1cff3-dbed-4195-a388-ea008a394acc", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIGV5YDEJ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a9a1cff3-dbed-4195-a388-ea008a394acc/4DNFIGV5YDEJ.fastq.gz", "accession": "4DNFIGV5YDEJ", "href": "/files-fastq/4DNFIGV5YDEJ/@@download/4DNFIGV5YDEJ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFII5Q2R1X/", "paired_end": "2", "uuid": "433bab81-b67e-4bdf-9651-f7ca6fe4c982", "display_title": "4DNFII5Q2R1X.fastq.gz", "accession": "4DNFII5Q2R1X", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c6f950e5-f9f6-4eb5-9d12-beb12c609009/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c6f950e5-f9f6-4eb5-9d12-beb12c609009", "Total Sequences": 9097617, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGV5YDEJ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 597432812, "@type": ["FileFastq", "File", "Item"], "upload_key": "de51c745-e848-4285-93fc-1fecba6d180f/4DNFI2YWIQHD.fastq.gz", "@id": "/files-fastq/4DNFI2YWIQHD/", "md5sum": "b51739ea704d29c5d2eb7103fbc5ca53", "uuid": "de51c745-e848-4285-93fc-1fecba6d180f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI2YWIQHD.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/de51c745-e848-4285-93fc-1fecba6d180f/4DNFI2YWIQHD.fastq.gz", "accession": "4DNFI2YWIQHD", "href": "/files-fastq/4DNFI2YWIQHD/@@download/4DNFI2YWIQHD.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIH9RHYPP/", "paired_end": "2", "uuid": "b6ccfd37-fb45-441a-a34f-bceaff7de8a0", "display_title": "4DNFIH9RHYPP.fastq.gz", "accession": "4DNFIH9RHYPP", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/293dfaa2-40d4-4a13-bab4-b06a8ff10dd8/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "293dfaa2-40d4-4a13-bab4-b06a8ff10dd8", "Total Sequences": 9640420, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2YWIQHD/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 983244899, "@type": ["FileFastq", "File", "Item"], "upload_key": "f941ed3d-62f8-486d-a442-33d955005212/4DNFIDQR6G95.fastq.gz", "@id": "/files-fastq/4DNFIDQR6G95/", "md5sum": "ab4824176cf9a159f8a1419dcff12ff9", "uuid": "f941ed3d-62f8-486d-a442-33d955005212", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIDQR6G95.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f941ed3d-62f8-486d-a442-33d955005212/4DNFIDQR6G95.fastq.gz", "accession": "4DNFIDQR6G95", "href": "/files-fastq/4DNFIDQR6G95/@@download/4DNFIDQR6G95.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIO6XRP7A/", "paired_end": "2", "uuid": "070ff1b8-1c8a-4bd6-a732-644c077ef3be", "display_title": "4DNFIO6XRP7A.fastq.gz", "accession": "4DNFIO6XRP7A", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f00d4f46-467b-4219-be44-4b8c2a08f2a9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f00d4f46-467b-4219-be44-4b8c2a08f2a9", "Total Sequences": 16712610, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDQR6G95/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 559035336, "@type": ["FileFastq", "File", "Item"], "upload_key": "8c08abb9-8cd9-4950-b62d-3b0cacc09344/4DNFIIHRTOSI.fastq.gz", "@id": "/files-fastq/4DNFIIHRTOSI/", "md5sum": "835f125d9cd76a2034ebbb2ced21c0cb", "uuid": "8c08abb9-8cd9-4950-b62d-3b0cacc09344", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIIHRTOSI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8c08abb9-8cd9-4950-b62d-3b0cacc09344/4DNFIIHRTOSI.fastq.gz", "accession": "4DNFIIHRTOSI", "href": "/files-fastq/4DNFIIHRTOSI/@@download/4DNFIIHRTOSI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIR6Z6DZU/", "paired_end": "2", "uuid": "b9ef5361-c4fa-4439-b64b-9ccca67a1712", "display_title": "4DNFIR6Z6DZU.fastq.gz", "accession": "4DNFIR6Z6DZU", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/ba265e27-2826-4a20-ab0e-a3b84a645d77/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "ba265e27-2826-4a20-ab0e-a3b84a645d77", "Total Sequences": 9315159, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIHRTOSI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 390169086, "@type": ["FileFastq", "File", "Item"], "upload_key": "61f15d9d-9e55-4233-988f-0b51ae893ca3/4DNFIXCZ6KDM.fastq.gz", "@id": "/files-fastq/4DNFIXCZ6KDM/", "md5sum": "38a459c0d423f9b80c237871a9abc812", "uuid": "61f15d9d-9e55-4233-988f-0b51ae893ca3", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIXCZ6KDM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/61f15d9d-9e55-4233-988f-0b51ae893ca3/4DNFIXCZ6KDM.fastq.gz", "accession": "4DNFIXCZ6KDM", "href": "/files-fastq/4DNFIXCZ6KDM/@@download/4DNFIXCZ6KDM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIS5EG2P3/", "paired_end": "2", "uuid": "776c8e48-9210-4a3c-97fe-8548e7b55851", "display_title": "4DNFIS5EG2P3.fastq.gz", "accession": "4DNFIS5EG2P3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/33934339-0b8b-41b0-8e72-3ca80e8b9782/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "33934339-0b8b-41b0-8e72-3ca80e8b9782", "Total Sequences": 5837968, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXCZ6KDM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 503386842, "@type": ["FileFastq", "File", "Item"], "upload_key": "d0793069-a121-4b59-be52-1669bafb4f61/4DNFI3ULR8ZP.fastq.gz", "@id": "/files-fastq/4DNFI3ULR8ZP/", "md5sum": "030c0fda6aa63fabe52b60c3383975cc", "uuid": "d0793069-a121-4b59-be52-1669bafb4f61", "paired_end": "1", "file_type": "reads", "display_title": "4DNFI3ULR8ZP.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d0793069-a121-4b59-be52-1669bafb4f61/4DNFI3ULR8ZP.fastq.gz", "accession": "4DNFI3ULR8ZP", "href": "/files-fastq/4DNFI3ULR8ZP/@@download/4DNFI3ULR8ZP.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI5NF6VKM/", "paired_end": "2", "uuid": "04f56c34-a624-44ed-a171-d67850ce44cd", "display_title": "4DNFI5NF6VKM.fastq.gz", "accession": "4DNFI5NF6VKM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6dde4ef7-417a-4c4f-9337-f59000712240/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6dde4ef7-417a-4c4f-9337-f59000712240", "Total Sequences": 8605147, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3ULR8ZP/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 714894111, "@type": ["FileFastq", "File", "Item"], "upload_key": "a7f45429-b8a0-493f-a293-c8eb42db842f/4DNFIW8E69YQ.fastq.gz", "@id": "/files-fastq/4DNFIW8E69YQ/", "md5sum": "75c280b9e9568d73f606fd132c755b0b", "uuid": "a7f45429-b8a0-493f-a293-c8eb42db842f", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIW8E69YQ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a7f45429-b8a0-493f-a293-c8eb42db842f/4DNFIW8E69YQ.fastq.gz", "accession": "4DNFIW8E69YQ", "href": "/files-fastq/4DNFIW8E69YQ/@@download/4DNFIW8E69YQ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI7YA17BV/", "paired_end": "2", "uuid": "a11b3a5c-22e9-43d4-8376-eb2435507429", "display_title": "4DNFI7YA17BV.fastq.gz", "accession": "4DNFI7YA17BV", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6c9342ec-622f-4f39-a7aa-9510bf001e11/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6c9342ec-622f-4f39-a7aa-9510bf001e11", "Total Sequences": 12056043, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW8E69YQ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 703779490, "@type": ["FileFastq", "File", "Item"], "upload_key": "d33ff33d-2128-4c56-8923-987796c99a6d/4DNFIZHGHNU8.fastq.gz", "@id": "/files-fastq/4DNFIZHGHNU8/", "md5sum": "ce7d06fe7d6fd5edba8caa7e6d4b1c8b", "uuid": "d33ff33d-2128-4c56-8923-987796c99a6d", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIZHGHNU8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d33ff33d-2128-4c56-8923-987796c99a6d/4DNFIZHGHNU8.fastq.gz", "accession": "4DNFIZHGHNU8", "href": "/files-fastq/4DNFIZHGHNU8/@@download/4DNFIZHGHNU8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIKMROLDM/", "paired_end": "2", "uuid": "d4a38106-8ebe-4894-8bd2-5bb3c6bbc5b2", "display_title": "4DNFIKMROLDM.fastq.gz", "accession": "4DNFIKMROLDM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/febcee93-ea8e-48bf-8101-9ef49f92ae07/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "febcee93-ea8e-48bf-8101-9ef49f92ae07", "Total Sequences": 11930395, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZHGHNU8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 909772527, "@type": ["FileFastq", "File", "Item"], "upload_key": "843857ab-a1a2-4b10-8cba-74b22c9fb8b5/4DNFIC967CJS.fastq.gz", "@id": "/files-fastq/4DNFIC967CJS/", "md5sum": "fefa64a0195ba3de29bdc97d81ea55ab", "uuid": "843857ab-a1a2-4b10-8cba-74b22c9fb8b5", "paired_end": "1", "file_type": "reads", "display_title": "4DNFIC967CJS.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/843857ab-a1a2-4b10-8cba-74b22c9fb8b5/4DNFIC967CJS.fastq.gz", "accession": "4DNFIC967CJS", "href": "/files-fastq/4DNFIC967CJS/@@download/4DNFIC967CJS.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIVLA4NHA/", "paired_end": "2", "uuid": "5560122a-b689-436f-8e79-7b84233f30ef", "display_title": "4DNFIVLA4NHA.fastq.gz", "accession": "4DNFIVLA4NHA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7050999d-f9ca-461f-b719-aa6d324ba445/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7050999d-f9ca-461f-b719-aa6d324ba445", "Total Sequences": 14532066, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIC967CJS/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 467411712, "@type": ["FileFastq", "File", "Item"], "upload_key": "7293bd46-2417-4c54-84c9-bbd1fa4d4e39/4DNFIJGNJU3E.fastq.gz", "@id": "/files-fastq/4DNFIJGNJU3E/", "md5sum": "eaf49cb46ad5128923ab24aeb462ae8d", "uuid": "7293bd46-2417-4c54-84c9-bbd1fa4d4e39", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIJGNJU3E.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7293bd46-2417-4c54-84c9-bbd1fa4d4e39/4DNFIJGNJU3E.fastq.gz", "accession": "4DNFIJGNJU3E", "href": "/files-fastq/4DNFIJGNJU3E/@@download/4DNFIJGNJU3E.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIVHQ4UQB/", "paired_end": "1", "uuid": "4f0d2896-6ec8-4171-adc2-576f4684422d", "display_title": "4DNFIVHQ4UQB.fastq.gz", "accession": "4DNFIVHQ4UQB", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e436ef51-12c4-4178-996f-9f706f4447d1/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e436ef51-12c4-4178-996f-9f706f4447d1", "Total Sequences": 8132182, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJGNJU3E/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 362798342, "@type": ["FileFastq", "File", "Item"], "upload_key": "18331316-1e1d-4d78-91e6-20b4b2023c12/4DNFI4M2LIR5.fastq.gz", "@id": "/files-fastq/4DNFI4M2LIR5/", "md5sum": "788b9c7adfca1c13de9aed8a42239777", "uuid": "18331316-1e1d-4d78-91e6-20b4b2023c12", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI4M2LIR5.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/18331316-1e1d-4d78-91e6-20b4b2023c12/4DNFI4M2LIR5.fastq.gz", "accession": "4DNFI4M2LIR5", "href": "/files-fastq/4DNFI4M2LIR5/@@download/4DNFI4M2LIR5.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXETAAX9/", "paired_end": "1", "uuid": "0c804b93-4486-4aeb-84ca-c59e7267d5ce", "display_title": "4DNFIXETAAX9.fastq.gz", "accession": "4DNFIXETAAX9", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e9bf5db7-ad3c-4c5c-ba5b-8bef0c4251c7/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e9bf5db7-ad3c-4c5c-ba5b-8bef0c4251c7", "Total Sequences": 6205259, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4M2LIR5/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 619891003, "@type": ["FileFastq", "File", "Item"], "upload_key": "388ba5e1-e974-4ac6-a6b7-f686232b9416/4DNFIVANU5QT.fastq.gz", "@id": "/files-fastq/4DNFIVANU5QT/", "md5sum": "ef0c02b09e024266e390f4958d7d69ba", "uuid": "388ba5e1-e974-4ac6-a6b7-f686232b9416", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIVANU5QT.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/388ba5e1-e974-4ac6-a6b7-f686232b9416/4DNFIVANU5QT.fastq.gz", "accession": "4DNFIVANU5QT", "href": "/files-fastq/4DNFIVANU5QT/@@download/4DNFIVANU5QT.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISW5T5AG/", "paired_end": "1", "uuid": "64929575-54c8-41c8-abc7-fa766f215fc4", "display_title": "4DNFISW5T5AG.fastq.gz", "accession": "4DNFISW5T5AG", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/65a02c48-0428-4f62-bdcd-8bade4d9aec7/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "65a02c48-0428-4f62-bdcd-8bade4d9aec7", "Total Sequences": 10529256, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVANU5QT/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 672734167, "@type": ["FileFastq", "File", "Item"], "upload_key": "d6be2eff-c070-4bc7-a058-d4c6a62c9d14/4DNFIF27U5E8.fastq.gz", "@id": "/files-fastq/4DNFIF27U5E8/", "md5sum": "465d7c8146b020d70d3625a35fdbf372", "uuid": "d6be2eff-c070-4bc7-a058-d4c6a62c9d14", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIF27U5E8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d6be2eff-c070-4bc7-a058-d4c6a62c9d14/4DNFIF27U5E8.fastq.gz", "accession": "4DNFIF27U5E8", "href": "/files-fastq/4DNFIF27U5E8/@@download/4DNFIF27U5E8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINUICIH1/", "paired_end": "1", "uuid": "ea863487-627e-4649-8bd2-bdb4c7e8259e", "display_title": "4DNFINUICIH1.fastq.gz", "accession": "4DNFINUICIH1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2cb57e24-f285-4b29-8711-a99ff96d6e48/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2cb57e24-f285-4b29-8711-a99ff96d6e48", "Total Sequences": 11707271, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF27U5E8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 738664767, "@type": ["FileFastq", "File", "Item"], "upload_key": "8c53a413-ac47-4e8c-bb7c-69edea06fc00/4DNFIPLY79GK.fastq.gz", "@id": "/files-fastq/4DNFIPLY79GK/", "md5sum": "11ba23f0f9ce594b16123ced4d3d5ece", "uuid": "8c53a413-ac47-4e8c-bb7c-69edea06fc00", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIPLY79GK.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8c53a413-ac47-4e8c-bb7c-69edea06fc00/4DNFIPLY79GK.fastq.gz", "accession": "4DNFIPLY79GK", "href": "/files-fastq/4DNFIPLY79GK/@@download/4DNFIPLY79GK.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIL5M39MH/", "paired_end": "1", "uuid": "bb957942-d317-4e4a-ac98-9963c365395e", "display_title": "4DNFIL5M39MH.fastq.gz", "accession": "4DNFIL5M39MH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/407921f9-47f5-4b7d-b4d9-290f2c5400e6/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "407921f9-47f5-4b7d-b4d9-290f2c5400e6", "Total Sequences": 12783500, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPLY79GK/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 637693120, "@type": ["FileFastq", "File", "Item"], "upload_key": "a3e5feed-eea0-4541-9253-d8c6de8f379c/4DNFICBDT4EW.fastq.gz", "@id": "/files-fastq/4DNFICBDT4EW/", "md5sum": "8c826d3eb7e5f4036c49c6feb3ef911f", "uuid": "a3e5feed-eea0-4541-9253-d8c6de8f379c", "paired_end": "2", "file_type": "reads", "display_title": "4DNFICBDT4EW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a3e5feed-eea0-4541-9253-d8c6de8f379c/4DNFICBDT4EW.fastq.gz", "accession": "4DNFICBDT4EW", "href": "/files-fastq/4DNFICBDT4EW/@@download/4DNFICBDT4EW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIF39GWDT/", "paired_end": "1", "uuid": "2c9e7a25-7c78-4064-b7d6-ceed9f576923", "display_title": "4DNFIF39GWDT.fastq.gz", "accession": "4DNFIF39GWDT", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c95e5c3e-8f55-495f-98a4-516a9c27e171/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c95e5c3e-8f55-495f-98a4-516a9c27e171", "Total Sequences": 10854441, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICBDT4EW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 671801404, "@type": ["FileFastq", "File", "Item"], "upload_key": "f505d396-9cdb-4d53-a1fb-df3923fddb1d/4DNFICPFMTUP.fastq.gz", "@id": "/files-fastq/4DNFICPFMTUP/", "md5sum": "0df3d80026d448e99596b7939a123fea", "uuid": "f505d396-9cdb-4d53-a1fb-df3923fddb1d", "paired_end": "2", "file_type": "reads", "display_title": "4DNFICPFMTUP.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f505d396-9cdb-4d53-a1fb-df3923fddb1d/4DNFICPFMTUP.fastq.gz", "accession": "4DNFICPFMTUP", "href": "/files-fastq/4DNFICPFMTUP/@@download/4DNFICPFMTUP.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6MKOCCL/", "paired_end": "1", "uuid": "16a728af-d514-4a10-a85f-004c62225fc7", "display_title": "4DNFI6MKOCCL.fastq.gz", "accession": "4DNFI6MKOCCL", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c9589979-33c6-4bd0-837d-1119a9853827/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c9589979-33c6-4bd0-837d-1119a9853827", "Total Sequences": 11598522, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICPFMTUP/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 684795585, "@type": ["FileFastq", "File", "Item"], "upload_key": "1d578e23-ab3c-4812-8de5-0e72476d7380/4DNFIIWMQUUC.fastq.gz", "@id": "/files-fastq/4DNFIIWMQUUC/", "md5sum": "81e212e4ff663c5d15bc8db3b22f12e6", "uuid": "1d578e23-ab3c-4812-8de5-0e72476d7380", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIIWMQUUC.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1d578e23-ab3c-4812-8de5-0e72476d7380/4DNFIIWMQUUC.fastq.gz", "accession": "4DNFIIWMQUUC", "href": "/files-fastq/4DNFIIWMQUUC/@@download/4DNFIIWMQUUC.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXB1QMSM/", "paired_end": "1", "uuid": "41ab906d-d068-4693-878c-e0594711e4b7", "display_title": "4DNFIXB1QMSM.fastq.gz", "accession": "4DNFIXB1QMSM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9c89dcaa-d653-4467-b074-57ba86527400/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9c89dcaa-d653-4467-b074-57ba86527400", "Total Sequences": 11771751, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIWMQUUC/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 678938742, "@type": ["FileFastq", "File", "Item"], "upload_key": "297b9376-a066-404d-be56-2acff4e2a143/4DNFISG13WAZ.fastq.gz", "@id": "/files-fastq/4DNFISG13WAZ/", "md5sum": "e843cabc23d015f9c093d29a0c670250", "uuid": "297b9376-a066-404d-be56-2acff4e2a143", "paired_end": "2", "file_type": "reads", "display_title": "4DNFISG13WAZ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/297b9376-a066-404d-be56-2acff4e2a143/4DNFISG13WAZ.fastq.gz", "accession": "4DNFISG13WAZ", "href": "/files-fastq/4DNFISG13WAZ/@@download/4DNFISG13WAZ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIA92J5FM/", "paired_end": "1", "uuid": "51a193d7-5bb2-4b00-a404-6ae7816766bc", "display_title": "4DNFIA92J5FM.fastq.gz", "accession": "4DNFIA92J5FM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7ab7512b-718b-4a14-aea3-d2ab9b0c970f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7ab7512b-718b-4a14-aea3-d2ab9b0c970f", "Total Sequences": 11682638, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISG13WAZ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 764671627, "@type": ["FileFastq", "File", "Item"], "upload_key": "f73d3ed1-d40d-4dae-bcba-11cadd90d30a/4DNFILH6VUF4.fastq.gz", "@id": "/files-fastq/4DNFILH6VUF4/", "md5sum": "e61f1fcd3b3be606c26c235500f46db6", "uuid": "f73d3ed1-d40d-4dae-bcba-11cadd90d30a", "paired_end": "2", "file_type": "reads", "display_title": "4DNFILH6VUF4.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f73d3ed1-d40d-4dae-bcba-11cadd90d30a/4DNFILH6VUF4.fastq.gz", "accession": "4DNFILH6VUF4", "href": "/files-fastq/4DNFILH6VUF4/@@download/4DNFILH6VUF4.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIGGI2VZS/", "paired_end": "1", "uuid": "42882c86-84f5-47eb-a625-d170fc47a578", "display_title": "4DNFIGGI2VZS.fastq.gz", "accession": "4DNFIGGI2VZS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e79ff168-ee07-40f1-92ba-f290eb88edc4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e79ff168-ee07-40f1-92ba-f290eb88edc4", "Total Sequences": 13095928, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILH6VUF4/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 363886024, "@type": ["FileFastq", "File", "Item"], "upload_key": "ef7530f5-2b23-452e-9692-364f1fef7ca8/4DNFIO9VJM4E.fastq.gz", "@id": "/files-fastq/4DNFIO9VJM4E/", "md5sum": "50fe8d3512f99c413be3eb10aab2a57f", "uuid": "ef7530f5-2b23-452e-9692-364f1fef7ca8", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIO9VJM4E.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ef7530f5-2b23-452e-9692-364f1fef7ca8/4DNFIO9VJM4E.fastq.gz", "accession": "4DNFIO9VJM4E", "href": "/files-fastq/4DNFIO9VJM4E/@@download/4DNFIO9VJM4E.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIGHPCEO4/", "paired_end": "1", "uuid": "6411c68a-f706-4b71-84cd-13b4cd28ec85", "display_title": "4DNFIGHPCEO4.fastq.gz", "accession": "4DNFIGHPCEO4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d19d3138-95a9-4702-9658-9f48d04ab9ac/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d19d3138-95a9-4702-9658-9f48d04ab9ac", "Total Sequences": 6152432, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIO9VJM4E/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 413752986, "@type": ["FileFastq", "File", "Item"], "upload_key": "c7cf2f91-2e6a-48da-a61b-12584ef66b8b/4DNFIAZCGSAE.fastq.gz", "@id": "/files-fastq/4DNFIAZCGSAE/", "md5sum": "7c0b62883342b3788aee8504fc931c4d", "uuid": "c7cf2f91-2e6a-48da-a61b-12584ef66b8b", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIAZCGSAE.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c7cf2f91-2e6a-48da-a61b-12584ef66b8b/4DNFIAZCGSAE.fastq.gz", "accession": "4DNFIAZCGSAE", "href": "/files-fastq/4DNFIAZCGSAE/@@download/4DNFIAZCGSAE.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIWDNC1CC/", "paired_end": "1", "uuid": "0811ffc9-cc18-4f0b-8fb5-18f1123f738f", "display_title": "4DNFIWDNC1CC.fastq.gz", "accession": "4DNFIWDNC1CC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/14866f01-918f-41a5-9cf2-a3473d51bcac/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "14866f01-918f-41a5-9cf2-a3473d51bcac", "Total Sequences": 7048735, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAZCGSAE/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 522331443, "@type": ["FileFastq", "File", "Item"], "upload_key": "3d518e00-8117-4828-8a85-47208effc04a/4DNFIDMWVLKJ.fastq.gz", "@id": "/files-fastq/4DNFIDMWVLKJ/", "md5sum": "484f2597393c190500006d10300f5e79", "uuid": "3d518e00-8117-4828-8a85-47208effc04a", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIDMWVLKJ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3d518e00-8117-4828-8a85-47208effc04a/4DNFIDMWVLKJ.fastq.gz", "accession": "4DNFIDMWVLKJ", "href": "/files-fastq/4DNFIDMWVLKJ/@@download/4DNFIDMWVLKJ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIF5C13VS/", "paired_end": "1", "uuid": "c1f4bfa2-a8f3-4123-8bda-2666dd1b7164", "display_title": "4DNFIF5C13VS.fastq.gz", "accession": "4DNFIF5C13VS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e8c99e1a-c364-469c-852b-076c30f4923b/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e8c99e1a-c364-469c-852b-076c30f4923b", "Total Sequences": 9046290, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDMWVLKJ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 401527919, "@type": ["FileFastq", "File", "Item"], "upload_key": "88f7937c-4467-421c-81cc-b35b4e062a27/4DNFIJBIWUFW.fastq.gz", "@id": "/files-fastq/4DNFIJBIWUFW/", "md5sum": "6c018ca6ce7ff615f20e915eddfdfa78", "uuid": "88f7937c-4467-421c-81cc-b35b4e062a27", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIJBIWUFW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/88f7937c-4467-421c-81cc-b35b4e062a27/4DNFIJBIWUFW.fastq.gz", "accession": "4DNFIJBIWUFW", "href": "/files-fastq/4DNFIJBIWUFW/@@download/4DNFIJBIWUFW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI3BF5G6P/", "paired_end": "1", "uuid": "ca241f43-b86b-4cc0-9451-8c4c8b0c2b4e", "display_title": "4DNFI3BF5G6P.fastq.gz", "accession": "4DNFI3BF5G6P", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1bc11834-311e-4ab6-ad2f-18463659943f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1bc11834-311e-4ab6-ad2f-18463659943f", "Total Sequences": 6967204, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJBIWUFW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 548816617, "@type": ["FileFastq", "File", "Item"], "upload_key": "873038d2-c665-4b97-9356-a50c94cbf379/4DNFI2CT8TTD.fastq.gz", "@id": "/files-fastq/4DNFI2CT8TTD/", "md5sum": "b76b74e3cffda03ca5b0a96056eb7ce5", "uuid": "873038d2-c665-4b97-9356-a50c94cbf379", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI2CT8TTD.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/873038d2-c665-4b97-9356-a50c94cbf379/4DNFI2CT8TTD.fastq.gz", "accession": "4DNFI2CT8TTD", "href": "/files-fastq/4DNFI2CT8TTD/@@download/4DNFI2CT8TTD.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIKXJUDWZ/", "paired_end": "1", "uuid": "fc8e079f-e90c-4bf0-a613-7af586302399", "display_title": "4DNFIKXJUDWZ.fastq.gz", "accession": "4DNFIKXJUDWZ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/febda6e8-d4e8-4e8b-825f-6f5a70d528bb/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "febda6e8-d4e8-4e8b-825f-6f5a70d528bb", "Total Sequences": 9318067, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2CT8TTD/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 792465412, "@type": ["FileFastq", "File", "Item"], "upload_key": "4c291944-645c-4c08-a5fe-20e2f40b89b5/4DNFIM5TJ93A.fastq.gz", "@id": "/files-fastq/4DNFIM5TJ93A/", "md5sum": "65b9ea10a789acb6c802ff37ed551916", "uuid": "4c291944-645c-4c08-a5fe-20e2f40b89b5", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIM5TJ93A.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4c291944-645c-4c08-a5fe-20e2f40b89b5/4DNFIM5TJ93A.fastq.gz", "accession": "4DNFIM5TJ93A", "href": "/files-fastq/4DNFIM5TJ93A/@@download/4DNFIM5TJ93A.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUH9GVOK/", "paired_end": "1", "uuid": "2249d314-00ef-4c5c-8663-673e9b92c2ec", "display_title": "4DNFIUH9GVOK.fastq.gz", "accession": "4DNFIUH9GVOK", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a3e8a1c6-7991-429b-a94d-9b29e0e3caca/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a3e8a1c6-7991-429b-a94d-9b29e0e3caca", "Total Sequences": 13740299, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIM5TJ93A/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 209388014, "@type": ["FileFastq", "File", "Item"], "upload_key": "f5d8d88e-d7ab-4ef9-86e0-0230d21e0271/4DNFIR2I8619.fastq.gz", "@id": "/files-fastq/4DNFIR2I8619/", "md5sum": "0da78e8989267d123c9a6ceae0b49608", "uuid": "f5d8d88e-d7ab-4ef9-86e0-0230d21e0271", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIR2I8619.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f5d8d88e-d7ab-4ef9-86e0-0230d21e0271/4DNFIR2I8619.fastq.gz", "accession": "4DNFIR2I8619", "href": "/files-fastq/4DNFIR2I8619/@@download/4DNFIR2I8619.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIF6TJH8Z/", "paired_end": "1", "uuid": "efee695c-ecef-4917-ba46-fbc2908666f4", "display_title": "4DNFIF6TJH8Z.fastq.gz", "accession": "4DNFIF6TJH8Z", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/dfdc03e7-b67b-4cdb-8d94-de3976adbfbd/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "dfdc03e7-b67b-4cdb-8d94-de3976adbfbd", "Total Sequences": 3702129, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR2I8619/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 74623186, "@type": ["FileFastq", "File", "Item"], "upload_key": "c8d23429-ac2d-44a3-a3d0-d333eb8ac2a5/4DNFIUCK9M4J.fastq.gz", "@id": "/files-fastq/4DNFIUCK9M4J/", "md5sum": "bfa460defd3178e19af009132ce79df9", "uuid": "c8d23429-ac2d-44a3-a3d0-d333eb8ac2a5", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIUCK9M4J.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c8d23429-ac2d-44a3-a3d0-d333eb8ac2a5/4DNFIUCK9M4J.fastq.gz", "accession": "4DNFIUCK9M4J", "href": "/files-fastq/4DNFIUCK9M4J/@@download/4DNFIUCK9M4J.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIH9Z7BFF/", "paired_end": "1", "uuid": "9fd5fb02-0259-4a17-8f97-a44278b6d8ee", "display_title": "4DNFIH9Z7BFF.fastq.gz", "accession": "4DNFIH9Z7BFF", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/8546222b-34a5-4502-852f-ebae3cb41947/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "8546222b-34a5-4502-852f-ebae3cb41947", "Total Sequences": 1316568, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUCK9M4J/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 871178336, "@type": ["FileFastq", "File", "Item"], "upload_key": "bf0e9fb8-fdfe-472e-9354-3a8a3712decc/4DNFI2GKJ5FV.fastq.gz", "@id": "/files-fastq/4DNFI2GKJ5FV/", "md5sum": "9f374a30c04724d3ff787070c43ebf81", "uuid": "bf0e9fb8-fdfe-472e-9354-3a8a3712decc", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI2GKJ5FV.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bf0e9fb8-fdfe-472e-9354-3a8a3712decc/4DNFI2GKJ5FV.fastq.gz", "accession": "4DNFI2GKJ5FV", "href": "/files-fastq/4DNFI2GKJ5FV/@@download/4DNFI2GKJ5FV.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXP8NPCO/", "paired_end": "1", "uuid": "04a1e5fa-18ce-47d3-a59c-b71fef8ee67f", "display_title": "4DNFIXP8NPCO.fastq.gz", "accession": "4DNFIXP8NPCO", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/fe1f95ec-6230-4c30-928b-fb4673e361fc/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "fe1f95ec-6230-4c30-928b-fb4673e361fc", "Total Sequences": 15002795, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2GKJ5FV/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 789997981, "@type": ["FileFastq", "File", "Item"], "upload_key": "d78a37ad-611d-45c0-863e-f6bf5eb27d90/4DNFIG7PPMXC.fastq.gz", "@id": "/files-fastq/4DNFIG7PPMXC/", "md5sum": "4f3be89083d7b2ce75f9799120ca5674", "uuid": "d78a37ad-611d-45c0-863e-f6bf5eb27d90", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIG7PPMXC.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d78a37ad-611d-45c0-863e-f6bf5eb27d90/4DNFIG7PPMXC.fastq.gz", "accession": "4DNFIG7PPMXC", "href": "/files-fastq/4DNFIG7PPMXC/@@download/4DNFIG7PPMXC.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIMMLFIBS/", "paired_end": "1", "uuid": "080fc533-1efc-4073-9f9a-498c2685ea8b", "display_title": "4DNFIMMLFIBS.fastq.gz", "accession": "4DNFIMMLFIBS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/5b183d60-db58-47b1-acf6-e804ed105176/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "5b183d60-db58-47b1-acf6-e804ed105176", "Total Sequences": 13674124, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIG7PPMXC/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 923476631, "@type": ["FileFastq", "File", "Item"], "upload_key": "178e0c9f-6e14-417c-8030-fe8cb7944210/4DNFITTFPZ9F.fastq.gz", "@id": "/files-fastq/4DNFITTFPZ9F/", "md5sum": "60778c6163a3656f361498f963c48f96", "uuid": "178e0c9f-6e14-417c-8030-fe8cb7944210", "paired_end": "2", "file_type": "reads", "display_title": "4DNFITTFPZ9F.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/178e0c9f-6e14-417c-8030-fe8cb7944210/4DNFITTFPZ9F.fastq.gz", "accession": "4DNFITTFPZ9F", "href": "/files-fastq/4DNFITTFPZ9F/@@download/4DNFITTFPZ9F.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6SNLOGM/", "paired_end": "1", "uuid": "5d1a339c-1072-432b-b449-54bcef61b120", "display_title": "4DNFI6SNLOGM.fastq.gz", "accession": "4DNFI6SNLOGM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2869b0e0-2986-456a-9391-da9213d06da9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2869b0e0-2986-456a-9391-da9213d06da9", "Total Sequences": 15993981, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITTFPZ9F/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 797600296, "@type": ["FileFastq", "File", "Item"], "upload_key": "502b540d-7205-4e34-bf9b-b932479ad050/4DNFIT6VVZCH.fastq.gz", "@id": "/files-fastq/4DNFIT6VVZCH/", "md5sum": "a9a73dd3a60c85c76d88edd6cfa895f1", "uuid": "502b540d-7205-4e34-bf9b-b932479ad050", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIT6VVZCH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/502b540d-7205-4e34-bf9b-b932479ad050/4DNFIT6VVZCH.fastq.gz", "accession": "4DNFIT6VVZCH", "href": "/files-fastq/4DNFIT6VVZCH/@@download/4DNFIT6VVZCH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXYNTMJ7/", "paired_end": "1", "uuid": "490bdd3b-0b4b-4010-afa5-238de9f3e83b", "display_title": "4DNFIXYNTMJ7.fastq.gz", "accession": "4DNFIXYNTMJ7", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9f5a3fd7-b948-46e1-a94d-928b091b8adf/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9f5a3fd7-b948-46e1-a94d-928b091b8adf", "Total Sequences": 13479968, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT6VVZCH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 244400004, "@type": ["FileFastq", "File", "Item"], "upload_key": "037818c9-27e6-49ec-a6cb-0e2dfccefe9e/4DNFINCI1I7R.fastq.gz", "@id": "/files-fastq/4DNFINCI1I7R/", "md5sum": "2e60be97e06801774a69f6cbacd8af3f", "uuid": "037818c9-27e6-49ec-a6cb-0e2dfccefe9e", "paired_end": "2", "file_type": "reads", "display_title": "4DNFINCI1I7R.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/037818c9-27e6-49ec-a6cb-0e2dfccefe9e/4DNFINCI1I7R.fastq.gz", "accession": "4DNFINCI1I7R", "href": "/files-fastq/4DNFINCI1I7R/@@download/4DNFINCI1I7R.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPRIY9KU/", "paired_end": "1", "uuid": "6c70dad7-089a-4b3c-a36e-0e7c0c9ebf00", "display_title": "4DNFIPRIY9KU.fastq.gz", "accession": "4DNFIPRIY9KU", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/21e7b31c-23aa-474e-a844-9ba183380588/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "21e7b31c-23aa-474e-a844-9ba183380588", "Total Sequences": 4077177, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINCI1I7R/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 534123591, "@type": ["FileFastq", "File", "Item"], "upload_key": "463fb804-22c2-4f71-9670-87c6681f3301/4DNFIB17QVFC.fastq.gz", "@id": "/files-fastq/4DNFIB17QVFC/", "md5sum": "b01ec47162745f5dc2b373c21e0281d9", "uuid": "463fb804-22c2-4f71-9670-87c6681f3301", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIB17QVFC.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/463fb804-22c2-4f71-9670-87c6681f3301/4DNFIB17QVFC.fastq.gz", "accession": "4DNFIB17QVFC", "href": "/files-fastq/4DNFIB17QVFC/@@download/4DNFIB17QVFC.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIN8LHLCW/", "paired_end": "1", "uuid": "1fb7cdb3-b57c-49ed-91a5-c13a79509d0f", "display_title": "4DNFIN8LHLCW.fastq.gz", "accession": "4DNFIN8LHLCW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a44927ed-f8c8-493f-98f5-65ac132d2848/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a44927ed-f8c8-493f-98f5-65ac132d2848", "Total Sequences": 9118739, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB17QVFC/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 577891786, "@type": ["FileFastq", "File", "Item"], "upload_key": "b2c4d889-0495-4d8c-97ad-670434271fd5/4DNFI9432Y1T.fastq.gz", "@id": "/files-fastq/4DNFI9432Y1T/", "md5sum": "ec70b09c3ceb63ae4f3c0b37827083fe", "uuid": "b2c4d889-0495-4d8c-97ad-670434271fd5", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI9432Y1T.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b2c4d889-0495-4d8c-97ad-670434271fd5/4DNFI9432Y1T.fastq.gz", "accession": "4DNFI9432Y1T", "href": "/files-fastq/4DNFI9432Y1T/@@download/4DNFI9432Y1T.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI1XHDX15/", "paired_end": "1", "uuid": "26a5002f-7586-43fa-b3fe-a375c1ba574f", "display_title": "4DNFI1XHDX15.fastq.gz", "accession": "4DNFI1XHDX15", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c57b103a-b6c6-41d1-9793-bac401953174/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c57b103a-b6c6-41d1-9793-bac401953174", "Total Sequences": 10143575, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9432Y1T/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 572861243, "@type": ["FileFastq", "File", "Item"], "upload_key": "0d6c7484-de8f-45aa-9336-550d43886e06/4DNFIWS6CPCO.fastq.gz", "@id": "/files-fastq/4DNFIWS6CPCO/", "md5sum": "649a1e879a022e80252469502889a49b", "uuid": "0d6c7484-de8f-45aa-9336-550d43886e06", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIWS6CPCO.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0d6c7484-de8f-45aa-9336-550d43886e06/4DNFIWS6CPCO.fastq.gz", "accession": "4DNFIWS6CPCO", "href": "/files-fastq/4DNFIWS6CPCO/@@download/4DNFIWS6CPCO.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIC1ZTY7T/", "paired_end": "1", "uuid": "822fb630-417c-4a25-b596-f7f16834c126", "display_title": "4DNFIC1ZTY7T.fastq.gz", "accession": "4DNFIC1ZTY7T", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/64fa22f7-eea3-4ca3-bd9f-218c71c41f12/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "64fa22f7-eea3-4ca3-bd9f-218c71c41f12", "Total Sequences": 9939745, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWS6CPCO/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 422326845, "@type": ["FileFastq", "File", "Item"], "upload_key": "150de83d-64d5-4d01-9c59-c37dc0b329a0/4DNFIYB7671S.fastq.gz", "@id": "/files-fastq/4DNFIYB7671S/", "md5sum": "20a3add1212e22b42845b9c124df88e0", "uuid": "150de83d-64d5-4d01-9c59-c37dc0b329a0", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIYB7671S.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/150de83d-64d5-4d01-9c59-c37dc0b329a0/4DNFIYB7671S.fastq.gz", "accession": "4DNFIYB7671S", "href": "/files-fastq/4DNFIYB7671S/@@download/4DNFIYB7671S.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI3QUHMIO/", "paired_end": "1", "uuid": "65ed36d6-5609-4345-bf84-6e060d4010a8", "display_title": "4DNFI3QUHMIO.fastq.gz", "accession": "4DNFI3QUHMIO", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4a7a034a-cb0b-43c6-bc26-179c00c477af/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4a7a034a-cb0b-43c6-bc26-179c00c477af", "Total Sequences": 7203022, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYB7671S/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 380531767, "@type": ["FileFastq", "File", "Item"], "upload_key": "6aac0e6d-cc0e-4e0d-8354-661907978ce9/4DNFI455HRUW.fastq.gz", "@id": "/files-fastq/4DNFI455HRUW/", "md5sum": "1accc891340db2f338034b9d91585253", "uuid": "6aac0e6d-cc0e-4e0d-8354-661907978ce9", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI455HRUW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6aac0e6d-cc0e-4e0d-8354-661907978ce9/4DNFI455HRUW.fastq.gz", "accession": "4DNFI455HRUW", "href": "/files-fastq/4DNFI455HRUW/@@download/4DNFI455HRUW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJF61QFI/", "paired_end": "1", "uuid": "9b605b24-6403-4af9-82a2-3a2118625ba6", "display_title": "4DNFIJF61QFI.fastq.gz", "accession": "4DNFIJF61QFI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/31e09a2f-fcce-4c2b-b0af-a355193f4450/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "31e09a2f-fcce-4c2b-b0af-a355193f4450", "Total Sequences": 6706184, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI455HRUW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 765284747, "@type": ["FileFastq", "File", "Item"], "upload_key": "fe644bd3-bad1-4539-93de-461483324b05/4DNFIAF6O7PY.fastq.gz", "@id": "/files-fastq/4DNFIAF6O7PY/", "md5sum": "f995958d6c6ba3bf7b1f446181de4e84", "uuid": "fe644bd3-bad1-4539-93de-461483324b05", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIAF6O7PY.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fe644bd3-bad1-4539-93de-461483324b05/4DNFIAF6O7PY.fastq.gz", "accession": "4DNFIAF6O7PY", "href": "/files-fastq/4DNFIAF6O7PY/@@download/4DNFIAF6O7PY.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQ986X4R/", "paired_end": "1", "uuid": "1b659c03-adbe-4092-ad96-dc59df4db9ff", "display_title": "4DNFIQ986X4R.fastq.gz", "accession": "4DNFIQ986X4R", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/430b5bdf-b061-4e00-a172-4e3b82e7745a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "430b5bdf-b061-4e00-a172-4e3b82e7745a", "Total Sequences": 13347974, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAF6O7PY/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 496392602, "@type": ["FileFastq", "File", "Item"], "upload_key": "fed30076-fd96-4828-8458-92d860a1754c/4DNFI2NQEUXW.fastq.gz", "@id": "/files-fastq/4DNFI2NQEUXW/", "md5sum": "9869eb1efcebf87bd16abf4af239f67c", "uuid": "fed30076-fd96-4828-8458-92d860a1754c", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI2NQEUXW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fed30076-fd96-4828-8458-92d860a1754c/4DNFI2NQEUXW.fastq.gz", "accession": "4DNFI2NQEUXW", "href": "/files-fastq/4DNFI2NQEUXW/@@download/4DNFI2NQEUXW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIU4LCC32/", "paired_end": "1", "uuid": "b8b9e72d-91bd-407e-ae6f-ca4483d1632d", "display_title": "4DNFIU4LCC32.fastq.gz", "accession": "4DNFIU4LCC32", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/419fa876-3b1b-4d3d-bc9f-f9ded625f48a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "419fa876-3b1b-4d3d-bc9f-f9ded625f48a", "Total Sequences": 8663171, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2NQEUXW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 328495844, "@type": ["FileFastq", "File", "Item"], "upload_key": "15bf9e3d-eaa2-4bba-9fd9-1f77e1ea0769/4DNFIJ4E3V5U.fastq.gz", "@id": "/files-fastq/4DNFIJ4E3V5U/", "md5sum": "5976402b1854046e7231f7a7b53a62cb", "uuid": "15bf9e3d-eaa2-4bba-9fd9-1f77e1ea0769", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIJ4E3V5U.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/15bf9e3d-eaa2-4bba-9fd9-1f77e1ea0769/4DNFIJ4E3V5U.fastq.gz", "accession": "4DNFIJ4E3V5U", "href": "/files-fastq/4DNFIJ4E3V5U/@@download/4DNFIJ4E3V5U.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFINPJVJR3/", "paired_end": "1", "uuid": "31e99752-46ef-41ca-8fae-d970172c6c8a", "display_title": "4DNFINPJVJR3.fastq.gz", "accession": "4DNFINPJVJR3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7e5b1780-fd4d-45c3-ab07-7ff59258eec3/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7e5b1780-fd4d-45c3-ab07-7ff59258eec3", "Total Sequences": 5731206, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ4E3V5U/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 235387679, "@type": ["FileFastq", "File", "Item"], "upload_key": "262c3e26-3d6f-4dcf-b1aa-43faab50e2e6/4DNFI4VJHGL5.fastq.gz", "@id": "/files-fastq/4DNFI4VJHGL5/", "md5sum": "218dd3f1559026c520f9b0dab7f827c1", "uuid": "262c3e26-3d6f-4dcf-b1aa-43faab50e2e6", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI4VJHGL5.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/262c3e26-3d6f-4dcf-b1aa-43faab50e2e6/4DNFI4VJHGL5.fastq.gz", "accession": "4DNFI4VJHGL5", "href": "/files-fastq/4DNFI4VJHGL5/@@download/4DNFI4VJHGL5.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI9UILHG2/", "paired_end": "1", "uuid": "5ae9a47e-8c52-403a-9c1b-bcbc33c5fe3f", "display_title": "4DNFI9UILHG2.fastq.gz", "accession": "4DNFI9UILHG2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/205454d6-5325-4367-8d44-d88ddf1dc247/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "205454d6-5325-4367-8d44-d88ddf1dc247", "Total Sequences": 4092845, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4VJHGL5/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 670267424, "@type": ["FileFastq", "File", "Item"], "upload_key": "999f1016-7987-40ed-b40d-0a0d42b120cb/4DNFI3PP2434.fastq.gz", "@id": "/files-fastq/4DNFI3PP2434/", "md5sum": "f052320566b60b1635f1464b9d61f15f", "uuid": "999f1016-7987-40ed-b40d-0a0d42b120cb", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI3PP2434.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/999f1016-7987-40ed-b40d-0a0d42b120cb/4DNFI3PP2434.fastq.gz", "accession": "4DNFI3PP2434", "href": "/files-fastq/4DNFI3PP2434/@@download/4DNFI3PP2434.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIDEYJAHF/", "paired_end": "1", "uuid": "beccef04-3fce-455e-b554-8915ec889c45", "display_title": "4DNFIDEYJAHF.fastq.gz", "accession": "4DNFIDEYJAHF", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/63735046-5cd4-4fd2-9f72-bf19c2962807/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "63735046-5cd4-4fd2-9f72-bf19c2962807", "Total Sequences": 11800620, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3PP2434/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 759028919, "@type": ["FileFastq", "File", "Item"], "upload_key": "a2aee686-4909-4d22-ad9b-3ba9d9e72d09/4DNFIQULZPIY.fastq.gz", "@id": "/files-fastq/4DNFIQULZPIY/", "md5sum": "4870c8cdeb73656c037227af6e97aa9c", "uuid": "a2aee686-4909-4d22-ad9b-3ba9d9e72d09", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIQULZPIY.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a2aee686-4909-4d22-ad9b-3ba9d9e72d09/4DNFIQULZPIY.fastq.gz", "accession": "4DNFIQULZPIY", "href": "/files-fastq/4DNFIQULZPIY/@@download/4DNFIQULZPIY.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIOUUY98K/", "paired_end": "1", "uuid": "38dc5479-5d7c-4cf7-835c-83e743fd16ca", "display_title": "4DNFIOUUY98K.fastq.gz", "accession": "4DNFIOUUY98K", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/48d29325-97ba-40fe-9708-6f7a5b82b411/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "48d29325-97ba-40fe-9708-6f7a5b82b411", "Total Sequences": 13314336, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQULZPIY/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 346597879, "@type": ["FileFastq", "File", "Item"], "upload_key": "80b2f65d-ebdd-4ebb-ae60-e22589756876/4DNFIRYWH6I8.fastq.gz", "@id": "/files-fastq/4DNFIRYWH6I8/", "md5sum": "be3293d6cb983f8ac38249f5b106b0bb", "uuid": "80b2f65d-ebdd-4ebb-ae60-e22589756876", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIRYWH6I8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/80b2f65d-ebdd-4ebb-ae60-e22589756876/4DNFIRYWH6I8.fastq.gz", "accession": "4DNFIRYWH6I8", "href": "/files-fastq/4DNFIRYWH6I8/@@download/4DNFIRYWH6I8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIRKXBEOP/", "paired_end": "1", "uuid": "6012fb35-4bc2-409b-9cd5-f941e7d796a1", "display_title": "4DNFIRKXBEOP.fastq.gz", "accession": "4DNFIRKXBEOP", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/226c2fc1-5fc2-4ef0-9f80-586dca001b5c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "226c2fc1-5fc2-4ef0-9f80-586dca001b5c", "Total Sequences": 6106001, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRYWH6I8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 586206562, "@type": ["FileFastq", "File", "Item"], "upload_key": "67ba74f7-025f-4b05-871f-aec1c30992ba/4DNFI2TFZMTY.fastq.gz", "@id": "/files-fastq/4DNFI2TFZMTY/", "md5sum": "348b31afb22bda22cb3c26fbcc6f2e4a", "uuid": "67ba74f7-025f-4b05-871f-aec1c30992ba", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI2TFZMTY.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/67ba74f7-025f-4b05-871f-aec1c30992ba/4DNFI2TFZMTY.fastq.gz", "accession": "4DNFI2TFZMTY", "href": "/files-fastq/4DNFI2TFZMTY/@@download/4DNFI2TFZMTY.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISPM4XIB/", "paired_end": "1", "uuid": "d9a0cb3e-a4a2-4c75-9fa8-db944be6aab2", "display_title": "4DNFISPM4XIB.fastq.gz", "accession": "4DNFISPM4XIB", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3758593b-8883-4443-a2f5-2da967867ba3/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3758593b-8883-4443-a2f5-2da967867ba3", "Total Sequences": 10222671, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2TFZMTY/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 662140554, "@type": ["FileFastq", "File", "Item"], "upload_key": "50d56b62-be5d-4941-bafd-e3ef91d9424a/4DNFI3R6VXSI.fastq.gz", "@id": "/files-fastq/4DNFI3R6VXSI/", "md5sum": "3a8df6ab245a9e4cbd3503338101221e", "uuid": "50d56b62-be5d-4941-bafd-e3ef91d9424a", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI3R6VXSI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/50d56b62-be5d-4941-bafd-e3ef91d9424a/4DNFI3R6VXSI.fastq.gz", "accession": "4DNFI3R6VXSI", "href": "/files-fastq/4DNFI3R6VXSI/@@download/4DNFI3R6VXSI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI5ZF6P2V/", "paired_end": "1", "uuid": "0d72c975-c291-49b6-8fa7-68faf93f4c28", "display_title": "4DNFI5ZF6P2V.fastq.gz", "accession": "4DNFI5ZF6P2V", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/afe06366-320e-4c11-bc20-d31620d6e3c8/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "afe06366-320e-4c11-bc20-d31620d6e3c8", "Total Sequences": 11301856, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3R6VXSI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 753726754, "@type": ["FileFastq", "File", "Item"], "upload_key": "de3ffc27-b65b-4dda-9fa0-5ebfa108da62/4DNFIATKFZ9K.fastq.gz", "@id": "/files-fastq/4DNFIATKFZ9K/", "md5sum": "c87f3117863943f2fac7dea67073521c", "uuid": "de3ffc27-b65b-4dda-9fa0-5ebfa108da62", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIATKFZ9K.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/de3ffc27-b65b-4dda-9fa0-5ebfa108da62/4DNFIATKFZ9K.fastq.gz", "accession": "4DNFIATKFZ9K", "href": "/files-fastq/4DNFIATKFZ9K/@@download/4DNFIATKFZ9K.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI88TYQ7G/", "paired_end": "1", "uuid": "062a2077-10b8-4b0c-b260-fb2d2b014ce8", "display_title": "4DNFI88TYQ7G.fastq.gz", "accession": "4DNFI88TYQ7G", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3b9ed5ff-6efe-404d-8ffe-1fb9932e914f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3b9ed5ff-6efe-404d-8ffe-1fb9932e914f", "Total Sequences": 13122528, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIATKFZ9K/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 736735561, "@type": ["FileFastq", "File", "Item"], "upload_key": "8ccfbfae-622d-4db4-ae36-afafc5f05b30/4DNFIHRDK73Z.fastq.gz", "@id": "/files-fastq/4DNFIHRDK73Z/", "md5sum": "e100e893d85ade4ef2c3f7bc1c4e3513", "uuid": "8ccfbfae-622d-4db4-ae36-afafc5f05b30", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIHRDK73Z.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8ccfbfae-622d-4db4-ae36-afafc5f05b30/4DNFIHRDK73Z.fastq.gz", "accession": "4DNFIHRDK73Z", "href": "/files-fastq/4DNFIHRDK73Z/@@download/4DNFIHRDK73Z.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBLXNB5W/", "paired_end": "1", "uuid": "6e21651a-8992-4cf0-859e-994e236b471d", "display_title": "4DNFIBLXNB5W.fastq.gz", "accession": "4DNFIBLXNB5W", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/07fba4ee-6bdf-489d-8336-5f1e1a5c744d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "07fba4ee-6bdf-489d-8336-5f1e1a5c744d", "Total Sequences": 12743790, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHRDK73Z/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 828134616, "@type": ["FileFastq", "File", "Item"], "upload_key": "425313b5-bd3b-45a5-96bd-9a3b42c646e4/4DNFITV8F4UG.fastq.gz", "@id": "/files-fastq/4DNFITV8F4UG/", "md5sum": "ed056898f582484605fb1e36c5c46996", "uuid": "425313b5-bd3b-45a5-96bd-9a3b42c646e4", "paired_end": "2", "file_type": "reads", "display_title": "4DNFITV8F4UG.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/425313b5-bd3b-45a5-96bd-9a3b42c646e4/4DNFITV8F4UG.fastq.gz", "accession": "4DNFITV8F4UG", "href": "/files-fastq/4DNFITV8F4UG/@@download/4DNFITV8F4UG.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIJJQCAJ7/", "paired_end": "1", "uuid": "05b6f190-88bf-4e8f-a4b8-8334364fe81d", "display_title": "4DNFIJJQCAJ7.fastq.gz", "accession": "4DNFIJJQCAJ7", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/ec123c73-0765-468c-b48c-62db13f26037/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "ec123c73-0765-468c-b48c-62db13f26037", "Total Sequences": 14403965, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITV8F4UG/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 865351753, "@type": ["FileFastq", "File", "Item"], "upload_key": "bdca3b1b-be1c-4948-98bd-f12a53ce50ed/4DNFIAOVAH82.fastq.gz", "@id": "/files-fastq/4DNFIAOVAH82/", "md5sum": "f3ed994a431e21c33e5d341b9892631b", "uuid": "bdca3b1b-be1c-4948-98bd-f12a53ce50ed", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIAOVAH82.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bdca3b1b-be1c-4948-98bd-f12a53ce50ed/4DNFIAOVAH82.fastq.gz", "accession": "4DNFIAOVAH82", "href": "/files-fastq/4DNFIAOVAH82/@@download/4DNFIAOVAH82.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBUS7ZM2/", "paired_end": "1", "uuid": "ebb5b54d-d4bc-47ad-bf60-f63e9fed9684", "display_title": "4DNFIBUS7ZM2.fastq.gz", "accession": "4DNFIBUS7ZM2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e1bf23f6-f8bf-4ad0-84f9-cf6dad3328fc/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e1bf23f6-f8bf-4ad0-84f9-cf6dad3328fc", "Total Sequences": 14970442, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAOVAH82/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 897661530, "@type": ["FileFastq", "File", "Item"], "upload_key": "96f2bde1-d8eb-4ff7-b918-f53fd227b8ff/4DNFIODCEJZ4.fastq.gz", "@id": "/files-fastq/4DNFIODCEJZ4/", "md5sum": "2ac1333103c68a3e5a307d7a8c423e4a", "uuid": "96f2bde1-d8eb-4ff7-b918-f53fd227b8ff", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIODCEJZ4.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/96f2bde1-d8eb-4ff7-b918-f53fd227b8ff/4DNFIODCEJZ4.fastq.gz", "accession": "4DNFIODCEJZ4", "href": "/files-fastq/4DNFIODCEJZ4/@@download/4DNFIODCEJZ4.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISUUKKA3/", "paired_end": "1", "uuid": "7db616b4-ba2e-4187-9c67-7617009941d7", "display_title": "4DNFISUUKKA3.fastq.gz", "accession": "4DNFISUUKKA3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/775f3652-fe90-4b72-bfba-894297d3a5c2/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "775f3652-fe90-4b72-bfba-894297d3a5c2", "Total Sequences": 15422767, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIODCEJZ4/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 926224107, "@type": ["FileFastq", "File", "Item"], "upload_key": "42964e5c-6af1-4262-b132-6403d227213c/4DNFIWFOUXCV.fastq.gz", "@id": "/files-fastq/4DNFIWFOUXCV/", "md5sum": "3c41b7a47218278e9c2f639c208ac328", "uuid": "42964e5c-6af1-4262-b132-6403d227213c", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIWFOUXCV.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/42964e5c-6af1-4262-b132-6403d227213c/4DNFIWFOUXCV.fastq.gz", "accession": "4DNFIWFOUXCV", "href": "/files-fastq/4DNFIWFOUXCV/@@download/4DNFIWFOUXCV.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI5PNFSFO/", "paired_end": "1", "uuid": "a935e0ee-da14-42ec-bfde-0d23b68a03fc", "display_title": "4DNFI5PNFSFO.fastq.gz", "accession": "4DNFI5PNFSFO", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a16cf1fd-fbfe-4817-8de1-f17396f16c29/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a16cf1fd-fbfe-4817-8de1-f17396f16c29", "Total Sequences": 15843389, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWFOUXCV/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 878127755, "@type": ["FileFastq", "File", "Item"], "upload_key": "3256602d-df10-4f18-addc-e26e1ae282f6/4DNFIROIMSA1.fastq.gz", "@id": "/files-fastq/4DNFIROIMSA1/", "md5sum": "0f44819969f534d7df14cd28526bce1a", "uuid": "3256602d-df10-4f18-addc-e26e1ae282f6", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIROIMSA1.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3256602d-df10-4f18-addc-e26e1ae282f6/4DNFIROIMSA1.fastq.gz", "accession": "4DNFIROIMSA1", "href": "/files-fastq/4DNFIROIMSA1/@@download/4DNFIROIMSA1.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFID3GCCEF/", "paired_end": "1", "uuid": "7c82e81d-0687-46d7-924e-f2ce83297b88", "display_title": "4DNFID3GCCEF.fastq.gz", "accession": "4DNFID3GCCEF", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d0e4ce57-69b4-420a-af9b-c0c2d9816524/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d0e4ce57-69b4-420a-af9b-c0c2d9816524", "Total Sequences": 14948660, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIROIMSA1/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 307789852, "@type": ["FileFastq", "File", "Item"], "upload_key": "6bc980f0-8844-4a65-9150-0f1046b605c5/4DNFIYEL2EAE.fastq.gz", "@id": "/files-fastq/4DNFIYEL2EAE/", "md5sum": "b80cdff5cb52805978cfb7d73e91059b", "uuid": "6bc980f0-8844-4a65-9150-0f1046b605c5", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIYEL2EAE.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6bc980f0-8844-4a65-9150-0f1046b605c5/4DNFIYEL2EAE.fastq.gz", "accession": "4DNFIYEL2EAE", "href": "/files-fastq/4DNFIYEL2EAE/@@download/4DNFIYEL2EAE.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBANC17L/", "paired_end": "1", "uuid": "c63864aa-577f-4b5f-bf08-447bfdc5a355", "display_title": "4DNFIBANC17L.fastq.gz", "accession": "4DNFIBANC17L", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4216545c-be8d-4965-9743-b6d86cc69bdb/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4216545c-be8d-4965-9743-b6d86cc69bdb", "Total Sequences": 4981209, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYEL2EAE/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 476598214, "@type": ["FileFastq", "File", "Item"], "upload_key": "be858359-511b-4ce4-b520-4f1cd8d0fb11/4DNFICYXOFNZ.fastq.gz", "@id": "/files-fastq/4DNFICYXOFNZ/", "md5sum": "3dbbcbece78bf347390b8d51cb50f62d", "uuid": "be858359-511b-4ce4-b520-4f1cd8d0fb11", "paired_end": "2", "file_type": "reads", "display_title": "4DNFICYXOFNZ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/be858359-511b-4ce4-b520-4f1cd8d0fb11/4DNFICYXOFNZ.fastq.gz", "accession": "4DNFICYXOFNZ", "href": "/files-fastq/4DNFICYXOFNZ/@@download/4DNFICYXOFNZ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIRO26OB3/", "paired_end": "1", "uuid": "e85fd4b1-a63d-4ade-b351-b18bfc9dfcf8", "display_title": "4DNFIRO26OB3.fastq.gz", "accession": "4DNFIRO26OB3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/0c84c0ec-65d3-41d7-8121-913a5d867966/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "0c84c0ec-65d3-41d7-8121-913a5d867966", "Total Sequences": 8349690, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICYXOFNZ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 472507534, "@type": ["FileFastq", "File", "Item"], "upload_key": "15fe4ad8-e0b2-4463-891d-31db323976b7/4DNFI624S4MN.fastq.gz", "@id": "/files-fastq/4DNFI624S4MN/", "md5sum": "520987516651e8d7ea27426edf546ea1", "uuid": "15fe4ad8-e0b2-4463-891d-31db323976b7", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI624S4MN.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/15fe4ad8-e0b2-4463-891d-31db323976b7/4DNFI624S4MN.fastq.gz", "accession": "4DNFI624S4MN", "href": "/files-fastq/4DNFI624S4MN/@@download/4DNFI624S4MN.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIK47VJPH/", "paired_end": "1", "uuid": "d0e34a6b-e1f8-466b-b171-72e27dec18bf", "display_title": "4DNFIK47VJPH.fastq.gz", "accession": "4DNFIK47VJPH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/fd12ac42-fc96-4a2f-b77d-9956355a7d0a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "fd12ac42-fc96-4a2f-b77d-9956355a7d0a", "Total Sequences": 8088764, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI624S4MN/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 445378718, "@type": ["FileFastq", "File", "Item"], "upload_key": "c6ed7037-db04-4e56-877b-9f2791071a91/4DNFIWMTF7LH.fastq.gz", "@id": "/files-fastq/4DNFIWMTF7LH/", "md5sum": "350609551d7b5bc4a4b021773d42ca1e", "uuid": "c6ed7037-db04-4e56-877b-9f2791071a91", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIWMTF7LH.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c6ed7037-db04-4e56-877b-9f2791071a91/4DNFIWMTF7LH.fastq.gz", "accession": "4DNFIWMTF7LH", "href": "/files-fastq/4DNFIWMTF7LH/@@download/4DNFIWMTF7LH.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI6SLMPKG/", "paired_end": "1", "uuid": "4c433365-a42d-4295-b37d-b127cf3a293f", "display_title": "4DNFI6SLMPKG.fastq.gz", "accession": "4DNFI6SLMPKG", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/1eb65784-961c-47d9-a2ef-0345e39d2b7f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "1eb65784-961c-47d9-a2ef-0345e39d2b7f", "Total Sequences": 7685108, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWMTF7LH/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 908620424, "@type": ["FileFastq", "File", "Item"], "upload_key": "3808dfd1-474d-4e38-8f45-f25393fcc2f2/4DNFIGXR92HN.fastq.gz", "@id": "/files-fastq/4DNFIGXR92HN/", "md5sum": "3c807617de533e873a09dea574954542", "uuid": "3808dfd1-474d-4e38-8f45-f25393fcc2f2", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIGXR92HN.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3808dfd1-474d-4e38-8f45-f25393fcc2f2/4DNFIGXR92HN.fastq.gz", "accession": "4DNFIGXR92HN", "href": "/files-fastq/4DNFIGXR92HN/@@download/4DNFIGXR92HN.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI89IZLP3/", "paired_end": "1", "uuid": "5c93258a-619a-4699-8656-e711b3c9354d", "display_title": "4DNFI89IZLP3.fastq.gz", "accession": "4DNFI89IZLP3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/fbfce9d7-a708-479a-908d-e938626aeb8c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "fbfce9d7-a708-479a-908d-e938626aeb8c", "Total Sequences": 15449010, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGXR92HN/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 992709501, "@type": ["FileFastq", "File", "Item"], "upload_key": "7f0e0fe8-7471-4ad2-9d21-2ff98ab01d2a/4DNFILWMVDG5.fastq.gz", "@id": "/files-fastq/4DNFILWMVDG5/", "md5sum": "8f3d02793d5f9abded5c02198c34b340", "uuid": "7f0e0fe8-7471-4ad2-9d21-2ff98ab01d2a", "paired_end": "2", "file_type": "reads", "display_title": "4DNFILWMVDG5.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7f0e0fe8-7471-4ad2-9d21-2ff98ab01d2a/4DNFILWMVDG5.fastq.gz", "accession": "4DNFILWMVDG5", "href": "/files-fastq/4DNFILWMVDG5/@@download/4DNFILWMVDG5.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIT8XS62Z/", "paired_end": "1", "uuid": "a9815da4-2b2a-46c5-85fe-26f28ee840f7", "display_title": "4DNFIT8XS62Z.fastq.gz", "accession": "4DNFIT8XS62Z", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/816b1b07-850e-4b13-a965-dceacb83069f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "816b1b07-850e-4b13-a965-dceacb83069f", "Total Sequences": 17036224, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILWMVDG5/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 967959792, "@type": ["FileFastq", "File", "Item"], "upload_key": "fed02d99-9a63-4e87-b910-0fc40a49639e/4DNFI9VMSV4Z.fastq.gz", "@id": "/files-fastq/4DNFI9VMSV4Z/", "md5sum": "f126b29acf3343ecbee15de6b77c59ac", "uuid": "fed02d99-9a63-4e87-b910-0fc40a49639e", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI9VMSV4Z.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fed02d99-9a63-4e87-b910-0fc40a49639e/4DNFI9VMSV4Z.fastq.gz", "accession": "4DNFI9VMSV4Z", "href": "/files-fastq/4DNFI9VMSV4Z/@@download/4DNFI9VMSV4Z.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIZ7NHARU/", "paired_end": "1", "uuid": "1653a5d5-7f34-4fdc-a23e-664d05b3d938", "display_title": "4DNFIZ7NHARU.fastq.gz", "accession": "4DNFIZ7NHARU", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/57a9bf57-5542-4ca2-bce8-882d8af4c19b/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "57a9bf57-5542-4ca2-bce8-882d8af4c19b", "Total Sequences": 16344151, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9VMSV4Z/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1044463270, "@type": ["FileFastq", "File", "Item"], "upload_key": "358f14f0-fdd8-4e90-9f50-dc6f904f951e/4DNFI75X13Y4.fastq.gz", "@id": "/files-fastq/4DNFI75X13Y4/", "md5sum": "ae6dddc598777c28a102d3cda4fbec88", "uuid": "358f14f0-fdd8-4e90-9f50-dc6f904f951e", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI75X13Y4.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/358f14f0-fdd8-4e90-9f50-dc6f904f951e/4DNFI75X13Y4.fastq.gz", "accession": "4DNFI75X13Y4", "href": "/files-fastq/4DNFI75X13Y4/@@download/4DNFI75X13Y4.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI976FG5K/", "paired_end": "1", "uuid": "39c34796-e6ce-428e-914e-c85115ef68b6", "display_title": "4DNFI976FG5K.fastq.gz", "accession": "4DNFI976FG5K", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/b784428c-529e-4a1e-ae20-24f8f93f995f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "b784428c-529e-4a1e-ae20-24f8f93f995f", "Total Sequences": 17975897, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI75X13Y4/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1086259009, "@type": ["FileFastq", "File", "Item"], "upload_key": "000b875c-0b5a-40d4-ac5e-9b0740076e70/4DNFIKYKRIQL.fastq.gz", "@id": "/files-fastq/4DNFIKYKRIQL/", "md5sum": "d869493471ca0290a59e682bf5496548", "uuid": "000b875c-0b5a-40d4-ac5e-9b0740076e70", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIKYKRIQL.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/000b875c-0b5a-40d4-ac5e-9b0740076e70/4DNFIKYKRIQL.fastq.gz", "accession": "4DNFIKYKRIQL", "href": "/files-fastq/4DNFIKYKRIQL/@@download/4DNFIKYKRIQL.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIRQO2SXH/", "paired_end": "1", "uuid": "0c0e3aac-45c8-4bf0-8876-45b06a1f7d6b", "display_title": "4DNFIRQO2SXH.fastq.gz", "accession": "4DNFIRQO2SXH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3619ea8b-7914-4a56-9ea4-546977e32767/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3619ea8b-7914-4a56-9ea4-546977e32767", "Total Sequences": 18471370, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKYKRIQL/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 791284566, "@type": ["FileFastq", "File", "Item"], "upload_key": "f899e7c7-ab47-4382-a689-2b0b20652c3b/4DNFIUQNIAVM.fastq.gz", "@id": "/files-fastq/4DNFIUQNIAVM/", "md5sum": "061bc6ed486ac538d0499e5ae79da2dd", "uuid": "f899e7c7-ab47-4382-a689-2b0b20652c3b", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIUQNIAVM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f899e7c7-ab47-4382-a689-2b0b20652c3b/4DNFIUQNIAVM.fastq.gz", "accession": "4DNFIUQNIAVM", "href": "/files-fastq/4DNFIUQNIAVM/@@download/4DNFIUQNIAVM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI8MJLI24/", "paired_end": "1", "uuid": "a5c0a84a-b209-4d43-a367-8dfb9072f2ce", "display_title": "4DNFI8MJLI24.fastq.gz", "accession": "4DNFI8MJLI24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/05c838f6-d7a9-4d43-85d4-c0e590b3a539/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "05c838f6-d7a9-4d43-85d4-c0e590b3a539", "Total Sequences": 13758244, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUQNIAVM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 309782247, "@type": ["FileFastq", "File", "Item"], "upload_key": "58fc77dd-7ebf-49a0-b249-d2a80f0fa5ae/4DNFINBOYE79.fastq.gz", "@id": "/files-fastq/4DNFINBOYE79/", "md5sum": "2775c6dc4009ef9e769667c27a3b51ce", "uuid": "58fc77dd-7ebf-49a0-b249-d2a80f0fa5ae", "paired_end": "2", "file_type": "reads", "display_title": "4DNFINBOYE79.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/58fc77dd-7ebf-49a0-b249-d2a80f0fa5ae/4DNFINBOYE79.fastq.gz", "accession": "4DNFINBOYE79", "href": "/files-fastq/4DNFINBOYE79/@@download/4DNFINBOYE79.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQKZ4DEV/", "paired_end": "1", "uuid": "fd10bfcc-f488-4bc5-b739-3c9114d09c0e", "display_title": "4DNFIQKZ4DEV.fastq.gz", "accession": "4DNFIQKZ4DEV", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/e2f3a31f-87d3-4472-b8bb-a503f063c9b0/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "e2f3a31f-87d3-4472-b8bb-a503f063c9b0", "Total Sequences": 5413629, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINBOYE79/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 814888314, "@type": ["FileFastq", "File", "Item"], "upload_key": "faed5e2c-fee9-469d-af66-33b8af22130e/4DNFI6HWSW36.fastq.gz", "@id": "/files-fastq/4DNFI6HWSW36/", "md5sum": "693a4f5ba14cb706b72b203933bafdd9", "uuid": "faed5e2c-fee9-469d-af66-33b8af22130e", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI6HWSW36.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/faed5e2c-fee9-469d-af66-33b8af22130e/4DNFI6HWSW36.fastq.gz", "accession": "4DNFI6HWSW36", "href": "/files-fastq/4DNFI6HWSW36/@@download/4DNFI6HWSW36.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI4SPFM5N/", "paired_end": "1", "uuid": "ee879220-6617-4d27-8686-df2a72404fde", "display_title": "4DNFI4SPFM5N.fastq.gz", "accession": "4DNFI4SPFM5N", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/190354b9-b98c-4c10-9a4a-7a13ede3d56a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "190354b9-b98c-4c10-9a4a-7a13ede3d56a", "Total Sequences": 13986809, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6HWSW36/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 787336461, "@type": ["FileFastq", "File", "Item"], "upload_key": "2c1ab810-d9b7-454f-9273-3ea793bd6bdb/4DNFIPCTTKNW.fastq.gz", "@id": "/files-fastq/4DNFIPCTTKNW/", "md5sum": "2f1bd0992c1d7ba80dd4d6854277fdfd", "uuid": "2c1ab810-d9b7-454f-9273-3ea793bd6bdb", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIPCTTKNW.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2c1ab810-d9b7-454f-9273-3ea793bd6bdb/4DNFIPCTTKNW.fastq.gz", "accession": "4DNFIPCTTKNW", "href": "/files-fastq/4DNFIPCTTKNW/@@download/4DNFIPCTTKNW.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI91J78V6/", "paired_end": "1", "uuid": "f92aa915-c2b6-48bf-901b-42a4fafb1def", "display_title": "4DNFI91J78V6.fastq.gz", "accession": "4DNFI91J78V6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/aa9b09e5-69ed-4e0d-bcda-8f0744cc25ba/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "aa9b09e5-69ed-4e0d-bcda-8f0744cc25ba", "Total Sequences": 13477824, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPCTTKNW/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 933099517, "@type": ["FileFastq", "File", "Item"], "upload_key": "a895e2f3-d5ea-4a3e-97f0-8f90ed74561b/4DNFI45S96QI.fastq.gz", "@id": "/files-fastq/4DNFI45S96QI/", "md5sum": "6adc0497b6de83105eb602a7e2f2849f", "uuid": "a895e2f3-d5ea-4a3e-97f0-8f90ed74561b", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI45S96QI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a895e2f3-d5ea-4a3e-97f0-8f90ed74561b/4DNFI45S96QI.fastq.gz", "accession": "4DNFI45S96QI", "href": "/files-fastq/4DNFI45S96QI/@@download/4DNFI45S96QI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIYBLVKBA/", "paired_end": "1", "uuid": "4b1c208d-3144-4561-956f-9ab0e8bdbcee", "display_title": "4DNFIYBLVKBA.fastq.gz", "accession": "4DNFIYBLVKBA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/2893eb1f-a627-4d78-8938-c7c6016d0545/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "2893eb1f-a627-4d78-8938-c7c6016d0545", "Total Sequences": 15845914, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI45S96QI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 551007715, "@type": ["FileFastq", "File", "Item"], "upload_key": "37359b07-41a1-496d-92fe-6b16517c4114/4DNFICIZKG5B.fastq.gz", "@id": "/files-fastq/4DNFICIZKG5B/", "md5sum": "7686bd612a1d39b7a02c8f8000c9f113", "uuid": "37359b07-41a1-496d-92fe-6b16517c4114", "paired_end": "2", "file_type": "reads", "display_title": "4DNFICIZKG5B.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/37359b07-41a1-496d-92fe-6b16517c4114/4DNFICIZKG5B.fastq.gz", "accession": "4DNFICIZKG5B", "href": "/files-fastq/4DNFICIZKG5B/@@download/4DNFICIZKG5B.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIUR4VCOJ/", "paired_end": "1", "uuid": "36a615b8-47fc-4cc1-b4c8-2ab616557593", "display_title": "4DNFIUR4VCOJ.fastq.gz", "accession": "4DNFIUR4VCOJ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/64f09d5f-7b06-4728-a8d3-890b27ce7ed3/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "64f09d5f-7b06-4728-a8d3-890b27ce7ed3", "Total Sequences": 9320894, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICIZKG5B/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 674875986, "@type": ["FileFastq", "File", "Item"], "upload_key": "a5b212fd-659e-4414-a72c-7d2bbf6a4dc9/4DNFI81CZU6M.fastq.gz", "@id": "/files-fastq/4DNFI81CZU6M/", "md5sum": "c94dde301d6a5287818bb5c540fe3828", "uuid": "a5b212fd-659e-4414-a72c-7d2bbf6a4dc9", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI81CZU6M.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a5b212fd-659e-4414-a72c-7d2bbf6a4dc9/4DNFI81CZU6M.fastq.gz", "accession": "4DNFI81CZU6M", "href": "/files-fastq/4DNFI81CZU6M/@@download/4DNFI81CZU6M.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIMOD1ZGL/", "paired_end": "1", "uuid": "4a6b9749-59e3-44c4-ac8e-1f90ac83aa94", "display_title": "4DNFIMOD1ZGL.fastq.gz", "accession": "4DNFIMOD1ZGL", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/93180a17-caab-4db5-aec6-d8647dc34982/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "93180a17-caab-4db5-aec6-d8647dc34982", "Total Sequences": 11579879, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI81CZU6M/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 575860220, "@type": ["FileFastq", "File", "Item"], "upload_key": "4aaadfcb-bfe2-4f95-b05d-1bff64bceffa/4DNFI4L1JFP5.fastq.gz", "@id": "/files-fastq/4DNFI4L1JFP5/", "md5sum": "e1865d8080c0f8f4f33efd1c56c37964", "uuid": "4aaadfcb-bfe2-4f95-b05d-1bff64bceffa", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI4L1JFP5.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4aaadfcb-bfe2-4f95-b05d-1bff64bceffa/4DNFI4L1JFP5.fastq.gz", "accession": "4DNFI4L1JFP5", "href": "/files-fastq/4DNFI4L1JFP5/@@download/4DNFI4L1JFP5.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIOLQDEXE/", "paired_end": "1", "uuid": "ac978af9-171b-47cc-abd1-b3fb2d0a3a65", "display_title": "4DNFIOLQDEXE.fastq.gz", "accession": "4DNFIOLQDEXE", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/bc28fd89-9eb8-4c72-b878-5357052c61ce/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "bc28fd89-9eb8-4c72-b878-5357052c61ce", "Total Sequences": 9723439, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4L1JFP5/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 707686100, "@type": ["FileFastq", "File", "Item"], "upload_key": "705a0bf3-96ab-4078-bb01-1d822bd81c18/4DNFI4SZIPHI.fastq.gz", "@id": "/files-fastq/4DNFI4SZIPHI/", "md5sum": "2ac65d47d2c8af6f29adc212308c5f3f", "uuid": "705a0bf3-96ab-4078-bb01-1d822bd81c18", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI4SZIPHI.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/705a0bf3-96ab-4078-bb01-1d822bd81c18/4DNFI4SZIPHI.fastq.gz", "accession": "4DNFI4SZIPHI", "href": "/files-fastq/4DNFI4SZIPHI/@@download/4DNFI4SZIPHI.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFID4RLOIZ/", "paired_end": "1", "uuid": "1be75b4b-fef2-48bb-bc3b-353ea1241568", "display_title": "4DNFID4RLOIZ.fastq.gz", "accession": "4DNFID4RLOIZ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/757c32d9-c45c-4c3c-9c9a-2fe774a9586d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "757c32d9-c45c-4c3c-9c9a-2fe774a9586d", "Total Sequences": 12078696, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4SZIPHI/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 979498150, "@type": ["FileFastq", "File", "Item"], "upload_key": "d5743c18-67d3-412d-aa24-cb8774ecf43b/4DNFIKDXMRSU.fastq.gz", "@id": "/files-fastq/4DNFIKDXMRSU/", "md5sum": "6bfb5864dcd6de3fff14f4990fa01b86", "uuid": "d5743c18-67d3-412d-aa24-cb8774ecf43b", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIKDXMRSU.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d5743c18-67d3-412d-aa24-cb8774ecf43b/4DNFIKDXMRSU.fastq.gz", "accession": "4DNFIKDXMRSU", "href": "/files-fastq/4DNFIKDXMRSU/@@download/4DNFIKDXMRSU.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI8P6QFAH/", "paired_end": "1", "uuid": "6208133b-fc28-4845-84b7-9685efc9da04", "display_title": "4DNFI8P6QFAH.fastq.gz", "accession": "4DNFI8P6QFAH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/88bb4090-07fa-4e3c-9a48-4aa93d8db3e2/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "88bb4090-07fa-4e3c-9a48-4aa93d8db3e2", "Total Sequences": 16670899, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKDXMRSU/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 891310310, "@type": ["FileFastq", "File", "Item"], "upload_key": "a9b92fa4-9d0c-4df2-b7be-5a68d45bc2f2/4DNFIUKUC2F1.fastq.gz", "@id": "/files-fastq/4DNFIUKUC2F1/", "md5sum": "9d51ef22d8f756a8faf46f37213de1bf", "uuid": "a9b92fa4-9d0c-4df2-b7be-5a68d45bc2f2", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIUKUC2F1.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a9b92fa4-9d0c-4df2-b7be-5a68d45bc2f2/4DNFIUKUC2F1.fastq.gz", "accession": "4DNFIUKUC2F1", "href": "/files-fastq/4DNFIUKUC2F1/@@download/4DNFIUKUC2F1.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIBH2LK6P/", "paired_end": "1", "uuid": "08b9d594-4d42-4cf8-8223-76c930a5b0bc", "display_title": "4DNFIBH2LK6P.fastq.gz", "accession": "4DNFIBH2LK6P", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/69895a90-933c-4597-ae75-d7443e3c1e18/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "69895a90-933c-4597-ae75-d7443e3c1e18", "Total Sequences": 15100100, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUKUC2F1/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 952082209, "@type": ["FileFastq", "File", "Item"], "upload_key": "1492f0c1-86ac-4029-9a21-27ce3752408b/4DNFID8XMZPQ.fastq.gz", "@id": "/files-fastq/4DNFID8XMZPQ/", "md5sum": "e4f076b8fc7557cca98b548ab968c98f", "uuid": "1492f0c1-86ac-4029-9a21-27ce3752408b", "paired_end": "2", "file_type": "reads", "display_title": "4DNFID8XMZPQ.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1492f0c1-86ac-4029-9a21-27ce3752408b/4DNFID8XMZPQ.fastq.gz", "accession": "4DNFID8XMZPQ", "href": "/files-fastq/4DNFID8XMZPQ/@@download/4DNFID8XMZPQ.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIAW3CFLX/", "paired_end": "1", "uuid": "93104856-1bb8-47d5-bdbc-964e5a7157ca", "display_title": "4DNFIAW3CFLX.fastq.gz", "accession": "4DNFIAW3CFLX", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/568f0ab2-daf8-49d2-a54e-8d2ed8ba27ca/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "568f0ab2-daf8-49d2-a54e-8d2ed8ba27ca", "Total Sequences": 16176916, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFID8XMZPQ/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 834359455, "@type": ["FileFastq", "File", "Item"], "upload_key": "ea9ab621-93ae-4cbe-8570-3d968dda9979/4DNFIPOROHBK.fastq.gz", "@id": "/files-fastq/4DNFIPOROHBK/", "md5sum": "7b41e9340b7450d53d84ba153704245c", "uuid": "ea9ab621-93ae-4cbe-8570-3d968dda9979", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIPOROHBK.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ea9ab621-93ae-4cbe-8570-3d968dda9979/4DNFIPOROHBK.fastq.gz", "accession": "4DNFIPOROHBK", "href": "/files-fastq/4DNFIPOROHBK/@@download/4DNFIPOROHBK.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIN2YORBI/", "paired_end": "1", "uuid": "3021bb03-6bd4-42df-babf-3a949365caed", "display_title": "4DNFIN2YORBI.fastq.gz", "accession": "4DNFIN2YORBI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/38f292f5-19c1-4ceb-9c23-b4f05d4aff88/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "38f292f5-19c1-4ceb-9c23-b4f05d4aff88", "Total Sequences": 14233696, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPOROHBK/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 918074652, "@type": ["FileFastq", "File", "Item"], "upload_key": "f17f3b40-2cf0-4072-82b1-7819c8df67ff/4DNFIX6RUI36.fastq.gz", "@id": "/files-fastq/4DNFIX6RUI36/", "md5sum": "319efdc86572170fb3c8ee76a5b4876a", "uuid": "f17f3b40-2cf0-4072-82b1-7819c8df67ff", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIX6RUI36.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f17f3b40-2cf0-4072-82b1-7819c8df67ff/4DNFIX6RUI36.fastq.gz", "accession": "4DNFIX6RUI36", "href": "/files-fastq/4DNFIX6RUI36/@@download/4DNFIX6RUI36.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQ414RFM/", "paired_end": "1", "uuid": "909bd70d-b510-4d5d-b09d-95db685f5958", "display_title": "4DNFIQ414RFM.fastq.gz", "accession": "4DNFIQ414RFM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/650b0f12-1b5f-4c6c-beca-307fee9159d4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "650b0f12-1b5f-4c6c-beca-307fee9159d4", "Total Sequences": 15602159, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX6RUI36/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 770649902, "@type": ["FileFastq", "File", "Item"], "upload_key": "727adcd3-771b-4acb-a5cd-08d8ff864859/4DNFIAP3Q9O8.fastq.gz", "@id": "/files-fastq/4DNFIAP3Q9O8/", "md5sum": "17cda9bac596aed84091744c31de2ce8", "uuid": "727adcd3-771b-4acb-a5cd-08d8ff864859", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIAP3Q9O8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/727adcd3-771b-4acb-a5cd-08d8ff864859/4DNFIAP3Q9O8.fastq.gz", "accession": "4DNFIAP3Q9O8", "href": "/files-fastq/4DNFIAP3Q9O8/@@download/4DNFIAP3Q9O8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI29BBHCV/", "paired_end": "1", "uuid": "2f9e6d6d-b96c-4629-9716-06c1d7ddafdd", "display_title": "4DNFI29BBHCV.fastq.gz", "accession": "4DNFI29BBHCV", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3015c9d6-055c-459a-ae5c-e6bbda70750d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3015c9d6-055c-459a-ae5c-e6bbda70750d", "Total Sequences": 13258763, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAP3Q9O8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 953985148, "@type": ["FileFastq", "File", "Item"], "upload_key": "b85cd69f-a5af-42e6-a8b2-9c9cb24520c0/4DNFIT4Q2HO6.fastq.gz", "@id": "/files-fastq/4DNFIT4Q2HO6/", "md5sum": "5260ac2542ced15b949aee24a8a8d3da", "uuid": "b85cd69f-a5af-42e6-a8b2-9c9cb24520c0", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIT4Q2HO6.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b85cd69f-a5af-42e6-a8b2-9c9cb24520c0/4DNFIT4Q2HO6.fastq.gz", "accession": "4DNFIT4Q2HO6", "href": "/files-fastq/4DNFIT4Q2HO6/@@download/4DNFIT4Q2HO6.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQBBOXAB/", "paired_end": "1", "uuid": "baaa260c-46e5-490a-9311-1ba0315d06cb", "display_title": "4DNFIQBBOXAB.fastq.gz", "accession": "4DNFIQBBOXAB", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/7b5d2307-18f7-4e43-b179-8e0f5b7cea22/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "7b5d2307-18f7-4e43-b179-8e0f5b7cea22", "Total Sequences": 16556973, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT4Q2HO6/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 288656018, "@type": ["FileFastq", "File", "Item"], "upload_key": "b02e809f-65dd-47ed-890b-f078cccb9189/4DNFISAZ11UT.fastq.gz", "@id": "/files-fastq/4DNFISAZ11UT/", "md5sum": "c8dca37e912883edf511360859b6fae6", "uuid": "b02e809f-65dd-47ed-890b-f078cccb9189", "paired_end": "2", "file_type": "reads", "display_title": "4DNFISAZ11UT.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b02e809f-65dd-47ed-890b-f078cccb9189/4DNFISAZ11UT.fastq.gz", "accession": "4DNFISAZ11UT", "href": "/files-fastq/4DNFISAZ11UT/@@download/4DNFISAZ11UT.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIVKT91BY/", "paired_end": "1", "uuid": "07a14391-6f5c-406c-b80b-d86f0ab3c403", "display_title": "4DNFIVKT91BY.fastq.gz", "accession": "4DNFIVKT91BY", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/20e1b59c-7afe-4f02-81a1-ebf9a40c2221/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "20e1b59c-7afe-4f02-81a1-ebf9a40c2221", "Total Sequences": 5044870, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISAZ11UT/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 498705427, "@type": ["FileFastq", "File", "Item"], "upload_key": "f7ef771f-5509-4d2d-a916-43234e5e25df/4DNFIYXX5XOA.fastq.gz", "@id": "/files-fastq/4DNFIYXX5XOA/", "md5sum": "0f771fa8b27abd53e45085c754cbf06d", "uuid": "f7ef771f-5509-4d2d-a916-43234e5e25df", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIYXX5XOA.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f7ef771f-5509-4d2d-a916-43234e5e25df/4DNFIYXX5XOA.fastq.gz", "accession": "4DNFIYXX5XOA", "href": "/files-fastq/4DNFIYXX5XOA/@@download/4DNFIYXX5XOA.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI41RRMFW/", "paired_end": "1", "uuid": "71dfaa51-1101-4118-a5e0-042b008c6598", "display_title": "4DNFI41RRMFW.fastq.gz", "accession": "4DNFI41RRMFW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/cf67105d-5283-451a-a1e9-6e5e4b56e1d5/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "cf67105d-5283-451a-a1e9-6e5e4b56e1d5", "Total Sequences": 8723597, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYXX5XOA/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 918176631, "@type": ["FileFastq", "File", "Item"], "upload_key": "fe2829a5-949c-4a71-bf00-9f1b221aa926/4DNFINBT6ZEK.fastq.gz", "@id": "/files-fastq/4DNFINBT6ZEK/", "md5sum": "f06bccbaa0801490794a0458dbb388a1", "uuid": "fe2829a5-949c-4a71-bf00-9f1b221aa926", "paired_end": "2", "file_type": "reads", "display_title": "4DNFINBT6ZEK.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fe2829a5-949c-4a71-bf00-9f1b221aa926/4DNFINBT6ZEK.fastq.gz", "accession": "4DNFINBT6ZEK", "href": "/files-fastq/4DNFINBT6ZEK/@@download/4DNFINBT6ZEK.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFISJLJIAM/", "paired_end": "1", "uuid": "ebeeb067-9845-40d1-8400-3e6a2ef8c4e4", "display_title": "4DNFISJLJIAM.fastq.gz", "accession": "4DNFISJLJIAM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f743c505-1e53-420c-9036-eb946a317473/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f743c505-1e53-420c-9036-eb946a317473", "Total Sequences": 15960205, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINBT6ZEK/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 543172752, "@type": ["FileFastq", "File", "Item"], "upload_key": "bb90af39-ca92-4a1f-849b-e65b5b83a3aa/4DNFIZXX9A5O.fastq.gz", "@id": "/files-fastq/4DNFIZXX9A5O/", "md5sum": "e8603bf1ab3ada663e92e15d8ce946ce", "uuid": "bb90af39-ca92-4a1f-849b-e65b5b83a3aa", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIZXX9A5O.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bb90af39-ca92-4a1f-849b-e65b5b83a3aa/4DNFIZXX9A5O.fastq.gz", "accession": "4DNFIZXX9A5O", "href": "/files-fastq/4DNFIZXX9A5O/@@download/4DNFIZXX9A5O.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI7VZ91E2/", "paired_end": "1", "uuid": "358dea80-77b7-4f28-9c48-384e69f825cf", "display_title": "4DNFI7VZ91E2.fastq.gz", "accession": "4DNFI7VZ91E2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9dff39b2-d261-42aa-958c-a13f8a79101d/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9dff39b2-d261-42aa-958c-a13f8a79101d", "Total Sequences": 9247145, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZXX9A5O/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 667659430, "@type": ["FileFastq", "File", "Item"], "upload_key": "a3a2a92d-a5ba-4836-b5e1-f61968faf1e4/4DNFIXQB3TV2.fastq.gz", "@id": "/files-fastq/4DNFIXQB3TV2/", "md5sum": "abea067c68a2073732fcf670dbe64fdc", "uuid": "a3a2a92d-a5ba-4836-b5e1-f61968faf1e4", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIXQB3TV2.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a3a2a92d-a5ba-4836-b5e1-f61968faf1e4/4DNFIXQB3TV2.fastq.gz", "accession": "4DNFIXQB3TV2", "href": "/files-fastq/4DNFIXQB3TV2/@@download/4DNFIXQB3TV2.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPY3UHP3/", "paired_end": "1", "uuid": "613a6abf-a3db-42a8-949d-799008f08016", "display_title": "4DNFIPY3UHP3.fastq.gz", "accession": "4DNFIPY3UHP3", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/255b1f99-0a1b-4a20-81ca-9d2f1bb307ab/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "255b1f99-0a1b-4a20-81ca-9d2f1bb307ab", "Total Sequences": 11499139, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXQB3TV2/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 531047491, "@type": ["FileFastq", "File", "Item"], "upload_key": "0a6271d5-4488-4502-a132-2d6c9f3d3162/4DNFIGT2NJEA.fastq.gz", "@id": "/files-fastq/4DNFIGT2NJEA/", "md5sum": "c835ee658b3cd4bfd43ea80d2a9b3304", "uuid": "0a6271d5-4488-4502-a132-2d6c9f3d3162", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIGT2NJEA.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0a6271d5-4488-4502-a132-2d6c9f3d3162/4DNFIGT2NJEA.fastq.gz", "accession": "4DNFIGT2NJEA", "href": "/files-fastq/4DNFIGT2NJEA/@@download/4DNFIGT2NJEA.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIDZC7X68/", "paired_end": "1", "uuid": "a12b00bb-9947-4b08-ad59-a29687d14f58", "display_title": "4DNFIDZC7X68.fastq.gz", "accession": "4DNFIDZC7X68", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/9585f67a-82bc-46be-873b-0dacd55bb83a/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "9585f67a-82bc-46be-873b-0dacd55bb83a", "Total Sequences": 9084226, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGT2NJEA/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1108973040, "@type": ["FileFastq", "File", "Item"], "upload_key": "81611f4e-50c1-4255-8363-c8b983a089f3/4DNFIQQOOHV5.fastq.gz", "@id": "/files-fastq/4DNFIQQOOHV5/", "md5sum": "10a187193643f66164701b8a93e9b413", "uuid": "81611f4e-50c1-4255-8363-c8b983a089f3", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIQQOOHV5.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/81611f4e-50c1-4255-8363-c8b983a089f3/4DNFIQQOOHV5.fastq.gz", "accession": "4DNFIQQOOHV5", "href": "/files-fastq/4DNFIQQOOHV5/@@download/4DNFIQQOOHV5.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHQTKGMW/", "paired_end": "1", "uuid": "5ebe6c0f-1a35-4c03-b00a-98476a9bf23d", "display_title": "4DNFIHQTKGMW.fastq.gz", "accession": "4DNFIHQTKGMW", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d4bf0910-51db-4545-9b1e-77545ee5dffa/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d4bf0910-51db-4545-9b1e-77545ee5dffa", "Total Sequences": 18902935, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQQOOHV5/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 585316423, "@type": ["FileFastq", "File", "Item"], "upload_key": "2eab08e5-9b08-40c2-8f8f-c8ecea5b30a3/4DNFI5BL92MC.fastq.gz", "@id": "/files-fastq/4DNFI5BL92MC/", "md5sum": "8f6a8d4e42fb567050094303594ba3bc", "uuid": "2eab08e5-9b08-40c2-8f8f-c8ecea5b30a3", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI5BL92MC.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2eab08e5-9b08-40c2-8f8f-c8ecea5b30a3/4DNFI5BL92MC.fastq.gz", "accession": "4DNFI5BL92MC", "href": "/files-fastq/4DNFI5BL92MC/@@download/4DNFI5BL92MC.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFILNJYYKG/", "paired_end": "1", "uuid": "64b88f75-4725-47f1-b185-9a7e317fff8b", "display_title": "4DNFILNJYYKG.fastq.gz", "accession": "4DNFILNJYYKG", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/212bcaa9-100b-4fd0-b5ca-53d8caac7191/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "212bcaa9-100b-4fd0-b5ca-53d8caac7191", "Total Sequences": 10003148, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5BL92MC/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 777532801, "@type": ["FileFastq", "File", "Item"], "upload_key": "1f847aba-2e1d-4bcc-99f6-b3cf6407737c/4DNFIMESNLX6.fastq.gz", "@id": "/files-fastq/4DNFIMESNLX6/", "md5sum": "069b53d3e01aed4d5cb197fee8a8148b", "uuid": "1f847aba-2e1d-4bcc-99f6-b3cf6407737c", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIMESNLX6.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1f847aba-2e1d-4bcc-99f6-b3cf6407737c/4DNFIMESNLX6.fastq.gz", "accession": "4DNFIMESNLX6", "href": "/files-fastq/4DNFIMESNLX6/@@download/4DNFIMESNLX6.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIPVWGK7P/", "paired_end": "1", "uuid": "accdbf67-6f08-4e43-82d6-176d88ea7ed9", "display_title": "4DNFIPVWGK7P.fastq.gz", "accession": "4DNFIPVWGK7P", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/32027016-3a13-4ed6-8ad1-ce7247cb2792/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "32027016-3a13-4ed6-8ad1-ce7247cb2792", "Total Sequences": 13124740, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMESNLX6/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 885894795, "@type": ["FileFastq", "File", "Item"], "upload_key": "1e3a1718-3650-4e82-847f-2e744020d7e7/4DNFIIZA5RW2.fastq.gz", "@id": "/files-fastq/4DNFIIZA5RW2/", "md5sum": "2c14a89ade05cf481ecf72a7449e1fe5", "uuid": "1e3a1718-3650-4e82-847f-2e744020d7e7", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIIZA5RW2.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1e3a1718-3650-4e82-847f-2e744020d7e7/4DNFIIZA5RW2.fastq.gz", "accession": "4DNFIIZA5RW2", "href": "/files-fastq/4DNFIIZA5RW2/@@download/4DNFIIZA5RW2.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFITHDMBDH/", "paired_end": "1", "uuid": "40d91afa-118e-494a-9387-fbb4b08446e7", "display_title": "4DNFITHDMBDH.fastq.gz", "accession": "4DNFITHDMBDH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3ec4a540-ebf3-4169-9f1b-a62b8f742593/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3ec4a540-ebf3-4169-9f1b-a62b8f742593", "Total Sequences": 15192739, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIZA5RW2/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 668520292, "@type": ["FileFastq", "File", "Item"], "upload_key": "e50f8e21-ef6c-4c74-8aa6-b3d28360a36e/4DNFIBWCH8X8.fastq.gz", "@id": "/files-fastq/4DNFIBWCH8X8/", "md5sum": "767de996e2d850d64046b176ad61b612", "uuid": "e50f8e21-ef6c-4c74-8aa6-b3d28360a36e", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIBWCH8X8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e50f8e21-ef6c-4c74-8aa6-b3d28360a36e/4DNFIBWCH8X8.fastq.gz", "accession": "4DNFIBWCH8X8", "href": "/files-fastq/4DNFIBWCH8X8/@@download/4DNFIBWCH8X8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIHNPS5DX/", "paired_end": "1", "uuid": "ec627d6a-850a-4d0e-991c-7c96af93fe41", "display_title": "4DNFIHNPS5DX.fastq.gz", "accession": "4DNFIHNPS5DX", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/c2b8eeaa-2d55-4539-b182-ac7b04ece86f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "c2b8eeaa-2d55-4539-b182-ac7b04ece86f", "Total Sequences": 11252163, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBWCH8X8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 825611543, "@type": ["FileFastq", "File", "Item"], "upload_key": "d817d092-c5b2-4a69-95e0-eb27e2589df9/4DNFIX3NAJT8.fastq.gz", "@id": "/files-fastq/4DNFIX3NAJT8/", "md5sum": "2e3ac719eaa1d03b5cdfa6b42abb3af3", "uuid": "d817d092-c5b2-4a69-95e0-eb27e2589df9", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIX3NAJT8.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d817d092-c5b2-4a69-95e0-eb27e2589df9/4DNFIX3NAJT8.fastq.gz", "accession": "4DNFIX3NAJT8", "href": "/files-fastq/4DNFIX3NAJT8/@@download/4DNFIX3NAJT8.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIQ8FYDYZ/", "paired_end": "1", "uuid": "cb3cfa91-42d2-41c1-abdc-5a3b9e76612e", "display_title": "4DNFIQ8FYDYZ.fastq.gz", "accession": "4DNFIQ8FYDYZ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/53a3167d-ffad-4e6f-bbc2-83b8f3d06af3/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "53a3167d-ffad-4e6f-bbc2-83b8f3d06af3", "Total Sequences": 14058714, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX3NAJT8/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 1127076862, "@type": ["FileFastq", "File", "Item"], "upload_key": "5f37cbda-1802-4fb3-8480-3fbb42c87ed4/4DNFI9G8ZOB9.fastq.gz", "@id": "/files-fastq/4DNFI9G8ZOB9/", "md5sum": "188607c3d8d0c76839f4ba8fed7cf2de", "uuid": "5f37cbda-1802-4fb3-8480-3fbb42c87ed4", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI9G8ZOB9.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5f37cbda-1802-4fb3-8480-3fbb42c87ed4/4DNFI9G8ZOB9.fastq.gz", "accession": "4DNFI9G8ZOB9", "href": "/files-fastq/4DNFI9G8ZOB9/@@download/4DNFI9G8ZOB9.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI32XG1TD/", "paired_end": "1", "uuid": "f312a496-c47b-46a1-b613-b76e7276b824", "display_title": "4DNFI32XG1TD.fastq.gz", "accession": "4DNFI32XG1TD", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/d18a921b-0c96-42f1-8936-20141d1ec5bd/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "d18a921b-0c96-42f1-8936-20141d1ec5bd", "Total Sequences": 19062433, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9G8ZOB9/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 725779706, "@type": ["FileFastq", "File", "Item"], "upload_key": "830d9057-3551-4579-bede-40eb7ee86342/4DNFIITUTFU4.fastq.gz", "@id": "/files-fastq/4DNFIITUTFU4/", "md5sum": "5cf5c8d6f7911ea41a763a4220d2c404", "uuid": "830d9057-3551-4579-bede-40eb7ee86342", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIITUTFU4.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/830d9057-3551-4579-bede-40eb7ee86342/4DNFIITUTFU4.fastq.gz", "accession": "4DNFIITUTFU4", "href": "/files-fastq/4DNFIITUTFU4/@@download/4DNFIITUTFU4.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIKD3W5IS/", "paired_end": "1", "uuid": "d63d2269-7bf4-4d18-a029-29f2499fc03e", "display_title": "4DNFIKD3W5IS.fastq.gz", "accession": "4DNFIKD3W5IS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/a0f51d33-9e6f-4e6f-8729-fde77ccb01ab/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "a0f51d33-9e6f-4e6f-8729-fde77ccb01ab", "Total Sequences": 12250865, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIITUTFU4/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 778264588, "@type": ["FileFastq", "File", "Item"], "upload_key": "a2d971b9-9aab-47a5-872d-bd6c70d3a7e7/4DNFI4Q37KQ9.fastq.gz", "@id": "/files-fastq/4DNFI4Q37KQ9/", "md5sum": "1d78ac1e4c64c5c853666960694bc61b", "uuid": "a2d971b9-9aab-47a5-872d-bd6c70d3a7e7", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI4Q37KQ9.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a2d971b9-9aab-47a5-872d-bd6c70d3a7e7/4DNFI4Q37KQ9.fastq.gz", "accession": "4DNFI4Q37KQ9", "href": "/files-fastq/4DNFI4Q37KQ9/@@download/4DNFI4Q37KQ9.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIC1S9QIQ/", "paired_end": "1", "uuid": "41fb567a-7d1c-4fc6-a2d3-af9a6c2c1774", "display_title": "4DNFIC1S9QIQ.fastq.gz", "accession": "4DNFIC1S9QIQ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4fea6a84-2cf1-4da0-84a3-9cce52100036/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4fea6a84-2cf1-4da0-84a3-9cce52100036", "Total Sequences": 12970189, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4Q37KQ9/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 451051472, "@type": ["FileFastq", "File", "Item"], "upload_key": "749b5452-4187-426f-87a6-fba66f610176/4DNFINF5H5O9.fastq.gz", "@id": "/files-fastq/4DNFINF5H5O9/", "md5sum": "fe6e64521eba776682709764fb657698", "uuid": "749b5452-4187-426f-87a6-fba66f610176", "paired_end": "2", "file_type": "reads", "display_title": "4DNFINF5H5O9.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/749b5452-4187-426f-87a6-fba66f610176/4DNFINF5H5O9.fastq.gz", "accession": "4DNFINF5H5O9", "href": "/files-fastq/4DNFINF5H5O9/@@download/4DNFINF5H5O9.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2KXF1UQ/", "paired_end": "1", "uuid": "896e7903-5d3e-44f8-8a2d-c1af3a8a0c02", "display_title": "4DNFI2KXF1UQ.fastq.gz", "accession": "4DNFI2KXF1UQ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/4ef4a224-5dbe-4a98-8c32-b0fd1ce43437/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "4ef4a224-5dbe-4a98-8c32-b0fd1ce43437", "Total Sequences": 7888808, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINF5H5O9/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 522343994, "@type": ["FileFastq", "File", "Item"], "upload_key": "433bab81-b67e-4bdf-9651-f7ca6fe4c982/4DNFII5Q2R1X.fastq.gz", "@id": "/files-fastq/4DNFII5Q2R1X/", "md5sum": "8dad3f0cac2ce158a0e5526746518688", "uuid": "433bab81-b67e-4bdf-9651-f7ca6fe4c982", "paired_end": "2", "file_type": "reads", "display_title": "4DNFII5Q2R1X.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/433bab81-b67e-4bdf-9651-f7ca6fe4c982/4DNFII5Q2R1X.fastq.gz", "accession": "4DNFII5Q2R1X", "href": "/files-fastq/4DNFII5Q2R1X/@@download/4DNFII5Q2R1X.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIGV5YDEJ/", "paired_end": "1", "uuid": "a9a1cff3-dbed-4195-a388-ea008a394acc", "display_title": "4DNFIGV5YDEJ.fastq.gz", "accession": "4DNFIGV5YDEJ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/23469ea6-9544-4609-8742-34865e7b0fb9/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "23469ea6-9544-4609-8742-34865e7b0fb9", "Total Sequences": 9097617, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFII5Q2R1X/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 552317366, "@type": ["FileFastq", "File", "Item"], "upload_key": "b6ccfd37-fb45-441a-a34f-bceaff7de8a0/4DNFIH9RHYPP.fastq.gz", "@id": "/files-fastq/4DNFIH9RHYPP/", "md5sum": "4e1c63dc2e94fd7dd5f07da19eabdb48", "uuid": "b6ccfd37-fb45-441a-a34f-bceaff7de8a0", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIH9RHYPP.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b6ccfd37-fb45-441a-a34f-bceaff7de8a0/4DNFIH9RHYPP.fastq.gz", "accession": "4DNFIH9RHYPP", "href": "/files-fastq/4DNFIH9RHYPP/@@download/4DNFIH9RHYPP.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI2YWIQHD/", "paired_end": "1", "uuid": "de51c745-e848-4285-93fc-1fecba6d180f", "display_title": "4DNFI2YWIQHD.fastq.gz", "accession": "4DNFI2YWIQHD", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/f2733b61-4026-4275-8679-900e2b21dec4/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "f2733b61-4026-4275-8679-900e2b21dec4", "Total Sequences": 9640420, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIH9RHYPP/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 956275037, "@type": ["FileFastq", "File", "Item"], "upload_key": "070ff1b8-1c8a-4bd6-a732-644c077ef3be/4DNFIO6XRP7A.fastq.gz", "@id": "/files-fastq/4DNFIO6XRP7A/", "md5sum": "67b256ec5291c6da213b6a8fd7d8df2c", "uuid": "070ff1b8-1c8a-4bd6-a732-644c077ef3be", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIO6XRP7A.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/070ff1b8-1c8a-4bd6-a732-644c077ef3be/4DNFIO6XRP7A.fastq.gz", "accession": "4DNFIO6XRP7A", "href": "/files-fastq/4DNFIO6XRP7A/@@download/4DNFIO6XRP7A.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIDQR6G95/", "paired_end": "1", "uuid": "f941ed3d-62f8-486d-a442-33d955005212", "display_title": "4DNFIDQR6G95.fastq.gz", "accession": "4DNFIDQR6G95", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/5525fca2-d775-480c-a0c1-6f715de0f10c/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "5525fca2-d775-480c-a0c1-6f715de0f10c", "Total Sequences": 16712610, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIO6XRP7A/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 537160581, "@type": ["FileFastq", "File", "Item"], "upload_key": "b9ef5361-c4fa-4439-b64b-9ccca67a1712/4DNFIR6Z6DZU.fastq.gz", "@id": "/files-fastq/4DNFIR6Z6DZU/", "md5sum": "1f29e8994778f29afe1e71acc04c64f5", "uuid": "b9ef5361-c4fa-4439-b64b-9ccca67a1712", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIR6Z6DZU.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b9ef5361-c4fa-4439-b64b-9ccca67a1712/4DNFIR6Z6DZU.fastq.gz", "accession": "4DNFIR6Z6DZU", "href": "/files-fastq/4DNFIR6Z6DZU/@@download/4DNFIR6Z6DZU.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIIHRTOSI/", "paired_end": "1", "uuid": "8c08abb9-8cd9-4950-b62d-3b0cacc09344", "display_title": "4DNFIIHRTOSI.fastq.gz", "accession": "4DNFIIHRTOSI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/60fe7ab0-bd4f-42a4-aa46-a950ae81981f/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "60fe7ab0-bd4f-42a4-aa46-a950ae81981f", "Total Sequences": 9315159, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR6Z6DZU/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 340366572, "@type": ["FileFastq", "File", "Item"], "upload_key": "776c8e48-9210-4a3c-97fe-8548e7b55851/4DNFIS5EG2P3.fastq.gz", "@id": "/files-fastq/4DNFIS5EG2P3/", "md5sum": "8ebad8e4349a6a10adbf50c6b0b31b74", "uuid": "776c8e48-9210-4a3c-97fe-8548e7b55851", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIS5EG2P3.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/776c8e48-9210-4a3c-97fe-8548e7b55851/4DNFIS5EG2P3.fastq.gz", "accession": "4DNFIS5EG2P3", "href": "/files-fastq/4DNFIS5EG2P3/@@download/4DNFIS5EG2P3.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIXCZ6KDM/", "paired_end": "1", "uuid": "61f15d9d-9e55-4233-988f-0b51ae893ca3", "display_title": "4DNFIXCZ6KDM.fastq.gz", "accession": "4DNFIXCZ6KDM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/3eca7614-743d-44f8-8adb-b8ebc36f6285/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "3eca7614-743d-44f8-8adb-b8ebc36f6285", "Total Sequences": 5837968, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIS5EG2P3/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 494238999, "@type": ["FileFastq", "File", "Item"], "upload_key": "04f56c34-a624-44ed-a171-d67850ce44cd/4DNFI5NF6VKM.fastq.gz", "@id": "/files-fastq/4DNFI5NF6VKM/", "md5sum": "a65c78ec392af4521155387bc0db9cf5", "uuid": "04f56c34-a624-44ed-a171-d67850ce44cd", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI5NF6VKM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/04f56c34-a624-44ed-a171-d67850ce44cd/4DNFI5NF6VKM.fastq.gz", "accession": "4DNFI5NF6VKM", "href": "/files-fastq/4DNFI5NF6VKM/@@download/4DNFI5NF6VKM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFI3ULR8ZP/", "paired_end": "1", "uuid": "d0793069-a121-4b59-be52-1669bafb4f61", "display_title": "4DNFI3ULR8ZP.fastq.gz", "accession": "4DNFI3ULR8ZP", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/6876de15-92e3-4a07-8412-88dd46cb38a2/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "6876de15-92e3-4a07-8412-88dd46cb38a2", "Total Sequences": 8605147, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5NF6VKM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 699747365, "@type": ["FileFastq", "File", "Item"], "upload_key": "a11b3a5c-22e9-43d4-8376-eb2435507429/4DNFI7YA17BV.fastq.gz", "@id": "/files-fastq/4DNFI7YA17BV/", "md5sum": "20ca10716598e18fe111cbeba2ba9e29", "uuid": "a11b3a5c-22e9-43d4-8376-eb2435507429", "paired_end": "2", "file_type": "reads", "display_title": "4DNFI7YA17BV.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a11b3a5c-22e9-43d4-8376-eb2435507429/4DNFI7YA17BV.fastq.gz", "accession": "4DNFI7YA17BV", "href": "/files-fastq/4DNFI7YA17BV/@@download/4DNFI7YA17BV.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIW8E69YQ/", "paired_end": "1", "uuid": "a7f45429-b8a0-493f-a293-c8eb42db842f", "display_title": "4DNFIW8E69YQ.fastq.gz", "accession": "4DNFIW8E69YQ", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/0f9f22a8-526c-4978-bb0f-c462b55ff3ca/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "0f9f22a8-526c-4978-bb0f-c462b55ff3ca", "Total Sequences": 12056043, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7YA17BV/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 689576012, "@type": ["FileFastq", "File", "Item"], "upload_key": "d4a38106-8ebe-4894-8bd2-5bb3c6bbc5b2/4DNFIKMROLDM.fastq.gz", "@id": "/files-fastq/4DNFIKMROLDM/", "md5sum": "0a62b45bf99c64134e5e1201c4367df5", "uuid": "d4a38106-8ebe-4894-8bd2-5bb3c6bbc5b2", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIKMROLDM.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d4a38106-8ebe-4894-8bd2-5bb3c6bbc5b2/4DNFIKMROLDM.fastq.gz", "accession": "4DNFIKMROLDM", "href": "/files-fastq/4DNFIKMROLDM/@@download/4DNFIKMROLDM.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIZHGHNU8/", "paired_end": "1", "uuid": "d33ff33d-2128-4c56-8923-987796c99a6d", "display_title": "4DNFIZHGHNU8.fastq.gz", "accession": "4DNFIZHGHNU8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/dd64e788-8507-4a03-a5d2-72188b762497/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "dd64e788-8507-4a03-a5d2-72188b762497", "Total Sequences": 11930395, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKMROLDM/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"file_size": 845979053, "@type": ["FileFastq", "File", "Item"], "upload_key": "5560122a-b689-436f-8e79-7b84233f30ef/4DNFIVLA4NHA.fastq.gz", "@id": "/files-fastq/4DNFIVLA4NHA/", "md5sum": "ebc35786baf36066304686790f1f7b49", "uuid": "5560122a-b689-436f-8e79-7b84233f30ef", "paired_end": "2", "file_type": "reads", "display_title": "4DNFIVLA4NHA.fastq.gz", "file_classification": "raw file", "status": "released", "file_type_detailed": "reads (fastq)", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5560122a-b689-436f-8e79-7b84233f30ef/4DNFIVLA4NHA.fastq.gz", "accession": "4DNFIVLA4NHA", "href": "/files-fastq/4DNFIVLA4NHA/@@download/4DNFIVLA4NHA.fastq.gz", "related_files": [{"relationship_type": "paired with", "file": {"file_type": "reads", "file_type_detailed": "reads (fastq)", "status": "released", "@type": ["FileFastq", "File", "Item"], "@id": "/files-fastq/4DNFIC967CJS/", "paired_end": "1", "uuid": "843857ab-a1a2-4b10-8cba-74b22c9fb8b5", "display_title": "4DNFIC967CJS.fastq.gz", "accession": "4DNFIC967CJS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "fastq", "@id": "/file-formats/fastq/", "file_format": "fastq", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "quality_metric": {"overall_quality_status": "PASS", "@id": "/quality-metrics-fastqc/41c1d9f3-be57-453a-b0d7-2573cc912118/", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "uuid": "41c1d9f3-be57-453a-b0d7-2573cc912118", "Total Sequences": 14532066, "status": "released", "display_title": "QualityMetricFastqc from 2020-04-24", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVLA4NHA/fastqc_report.html", "Sequence length": "101", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "status": "released", "display_title": "fastq", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "lab": {"name": "bing-ren-lab", "@id": "/labs/bing-ren-lab/", "uuid": "795847de-20b6-4f8c-ba8d-185215469cbf", "display_title": "Bing Ren, UCSD", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.795847de-20b6-4f8c-ba8d-185215469cbf"]}}, "external_references": [], "track_and_facet_info": {"experimental_lab": "Bing Ren, UCSD", "experiment_type": "sn-Hi-C", "experiment_bucket": "raw file", "assay_info": "MboI", "dataset": "Single nucleus Hi-C on WTC-11 with GFP tagged AAVS1", "condition": "clone 28", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "WTC-11 AAVS1-GFP C28", "lab_name": "Bing Ren, UCSD"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "crosslinking_method": "1% Formaldehyde", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "2be92e96-6776-429a-a228-347beca17f07", "accession": "4DNEXRB545EQ", "display_title": "sn-Hi-C on WTC-11 AAVS1-GFP C28 with MboI - 4DNEXRB545EQ", "biosample": {"biosource_summary": "WTC-11 AAVS1-GFP C28", "accession": "4DNBSFXY8IZQ", "@id": "/biosamples/4DNBSFXY8IZQ/", "biosample_category": ["WTC-11", "Human stem cell"], "uuid": "599094d3-2240-4d3c-84fd-9cb4b1381fb9", "treatments_summary": "None", "@type": ["Biosample", "Item"], "display_title": "4DNBSFXY8IZQ", "modifications_summary": "None", "status": "released", "biosample_type": "induced pluripotent stem cells", "biosource": [{"display_title": "WTC-11 AAVS1-GFP C28 - 4DNSR8LE4JQF", "override_biosource_name": "WTC-11 AAVS1-GFP C28", "biosource_type": "induced pluripotent stem cell", "@id": "/biosources/4DNSR8LE4JQF/", "@type": ["Biosource", "Item"], "cell_line_tier": "Unclassified", "accession": "4DNSR8LE4JQF", "uuid": "d0f30ba8-3e43-4b72-b3cb-32b83c170785", "status": "released", "tissue": {"uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "synonyms": ["animal stem cell"], "status": "released", "term_name": "stem cell", "@id": "/ontology-terms/CL:0000034/", "display_title": "stem cell", "term_id": "CL:0000034", "preferred_name": "stem cell", "@type": ["OntologyTerm", "Item"], "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "@id": "/ontology-terms/GO:0005623/", "@type": ["OntologyTerm", "Item"], "status": "current", "display_title": "cell", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "@id": "/ontology-terms/CL:0000000/", "@type": ["OntologyTerm", "Item"], "status": "released", "display_title": "cell", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"term_name": "GM25256", "preferred_name": "WTC-11", "display_title": "WTC-11", "synonyms": ["WTC-11", "WTC11"], "uuid": "648cb723-fc6f-44b1-81a3-796c5d3e7868", "@type": ["OntologyTerm", "Item"], "status": "released", "@id": "/ontology-terms/EFO:0009747/", "term_id": "EFO:0009747", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "slim_terms": [{"@id": "/ontology-terms/GO:0005623/", "status": "current", "@type": ["OntologyTerm", "Item"], "display_title": "cell", "uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/ontology-terms/CL:0000000/", "status": "released", "@type": ["OntologyTerm", "Item"], "display_title": "cell", "uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}]}, "organism": {"status": "released", "display_title": "H. sapiens", "scientific_name": "Homo sapiens", "name": "human", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "@type": ["Organism", "Item"], "@id": "/organisms/9606/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_culture_details": [{"status": "released", "@type": ["BiosampleCellCulture", "Item"], "uuid": "360d9f14-7033-47e2-92ad-7ba95855b989", "in_vitro_differentiated": "No", "@id": "/biosample-cell-cultures/360d9f14-7033-47e2-92ad-7ba95855b989/", "display_title": "BiosampleCellCulture from 2020-01-30", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "tissue_organ_info": {"tissue_source": "stem cell"}}, "experiment_type": {"@id": "/experiment-types/sn-hi-c/", "display_title": "sn-Hi-C", "assay_classification": "3C via Ligation", "uuid": "7a0f628b-cf79-4ac9-8f03-77a1f9c73ed7", "assay_subclass_short": "Hi-C (single cell)", "@type": ["ExperimentType", "Item"], "status": "released", "other_tags": ["DNA-DNA", "Single Cell", "3D", "Pairwise"], "experiment_category": "Sequencing", "title": "sn-Hi-C", "assay_subclassification": "DNA-DNA Pairwise Interactions - Single Cell", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "digestion_enzyme": {"@type": ["Enzyme", "Item"], "status": "released", "name": "MboI", "display_title": "MboI", "@id": "/enzymes/MboI/", "uuid": "d8da42d0-bc20-40e5-bacf-c263b8603e03", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "last_modified": {"date_modified": "2020-04-28T13:42:22.036943+00:00"}, "experiment_categorizer": {"combined": "Enzyme: MboI", "field": "Enzyme", "value": "MboI"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "external_references": []}], "experimentset_type": "replicate", "@id": "/experiment-set-replicates/4DNESF829JOW/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "94daec02-bb26-4799-99d3-989b2e9452aa", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNESF829JOW", "external_references": [], "pubs_using": [], "publications_of_set": [], "number_of_experiments": 1, "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/experiment-set-replicates/4DNESF829JOW/", "embedded_path": "badges", "item": {"messages": ["Replicate set contains only a single biological replicate"], "badge": {"commendation": null, "warning": "Replicate Numbers", "uuid": "24a64a84-3c33-4d76-aaf2-e5ef45eff347", "@id": "/badges/replicate-numbers/", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "description": "Issues with replicate numbers"}}}]}, "validation-errors": []}