ExperimentSetReplicate

ExperimentSet4DNESCOUGP8R
archived

Early fraction S-phase Repliseq on HFFc6 Tier 1 cells - all cells were grown in a single culture and split into 2 batches prior to BrdU labeling and FACs sorting. NOTE that this dataset is superseded by 4DNESIV168N6 consisting of bioreplicates 3 and 4, which is considered gold standard based on the FACS profile.

   August 17th, 2017 at 4:08am

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Fraction: early fraction of 2 fractions

4 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXY72J4DD
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on HFFc6 (Tier 1) S-phase early fraction
File
Alignments (bam)
4DNFIDVK9QFK
5.64m
5.116%
Experiment
4DNEX61WVI1Y
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on HFFc6 (Tier 1) S-phase early fraction
File
Alignments (bam)
4DNFIB417FP8
3.78m
2.536%