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Included Properties

Data Type
  • ExperimentSetReplicate15
    • Dataset
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Assay Details
    Set Type
  • Replicate15
    • Produced in Publication
  • Cheng Y et al. (2023) PMID:3677840215
    • Warnings
    11 Common Properties
     Project
    4DN
     Lab
    Siyuan Wang, YALE
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Organism
    Human
     Publication
    Cheng Y et al. (2023) PMID:36778402
     Modifications
    Viral Transduction
     Treatments
    No value
     Center
    OFHHD - Schatz
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    1
    Biosample
    Dataset
    2
    Condition
    3
    Assay Details
    Lab
    4DNES7J5VP92
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    137 genes knocked-down (using 404 sgRNAs and 8 sgNTC)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES5UHPM9B
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    CHD7 over-expression
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6SPZBS6
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    GFP over-expression, Control (for CHD7 OE)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESYSJOREU
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgPCBP1)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNWDMERJ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for sgZNF114)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESDOIAUSY
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESTEL2MX4
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgPCBP1 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6RGJOMK
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    sgZNF114 targeted knockdown
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES1S6LQKZ
    multiplexed FISH
    A549
    Multiplexed FISH in A549-Cas9 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESB7SZY5Q
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    sgNon-Targeting Control (for shCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESHA7AS6L
    multiplexed FISH
    H1-hESC differentiated to neural progenitor cell
    Multiplexed FISH in neural crest cells on Chr22
    shCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESIUBFH6Q
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    sgNon-Targeting Control (for siCHD7)
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES94LRC75
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr21
    siCHD7 targeted knocked-down
    Target
    34 TADs in Chr21, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNES6W6XBUJ
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    sgNon-Targeting Control (for siCHD7)
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    4DNESNGLW3S2
    multiplexed FISH
    RPE-hTERT (Tier 2)
    Multiplexed FISH in RPE1 on Chr22
    siCHD7 targeted knocked-down
    Target
    27 TADs in Chr22, Chromosomes, Geminin
    Siyuan Wang, YALE
    - fin -