17 fewer sets in 4DN-only Data.
Included Properties
Data Type
Dataset
Organ/System
Modifications
Treatments
Set Type
Warnings
15 Common Properties
Project
External
Lab
Jan-Michael Peters, IMP
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
immortalized cells
Sample Tier
Unclassified
Sample Category
Other
Sample
HeLa cell line
Tissue Source
uterine cervix
Publication
Wutz G et al. (2017) PMID:29217591
Assay Details
Enzyme: HindIII
Center
External
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, WALP RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, PDS5A/B RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, WALP, PDS5A/B RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, Pro-Met phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, S phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G2 phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 15min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 180min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 120min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
wt, G1 phase synchronization
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
CTCF degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
CTCF degron, G1 phase synchronization, auxin treatment 120min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 15min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 180min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
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