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17 fewer sets in 4DN-only Data.
 

Properties

Modifications
Treatments
Warnings
16 Common Properties
 Project
External
 Lab
Jan-Michael Peters, IMP
 Experiment Category
Sequencing
 Experiment Type
Dilution Hi-C
 Organism
Human
 Sample Type
immortalized cells
 Sample Tier
Unclassified
 Sample Category
Other
 Sample
HeLa cell line
 Tissue Source
uterine cervix
 Publication
Wutz G et al. (2017) Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, W
 Assay Details
Enzyme: HindIII
 Center
External
 Status
Released
 Commendations
No value
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, WALP RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, PDS5A/B RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, WALP, PDS5A/B RNAi depletion
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, Pro-Met phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, S phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G2 phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 15min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 180min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 120min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
wt, G1 phase synchronization
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
CTCF degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
CTCF degron, G1 phase synchronization, auxin treatment 120min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 15min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, auxin treatment 180min
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no RNAi treatment
Enzyme
HindIII
Dilution Hi-C
HeLa cell line
Hi-C on sync. SCC1-AID or CTCF-AID tagged Hela
SCC1 degron, G1 phase synchronization, no auxin treatment
Enzyme
HindIII
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