Included Properties
Data Type
Dataset
Sample Tier
Sample Category
Sample
Publication
Assay Details
Set Type
Status
Warnings
12 Common Properties
Project
4DN
Lab
Job Dekker, UMMS
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
stem cells
Organ/System
No value
Tissue Source
stem cell
Modifications
No value
Treatments
No value
Center
NOFIC - Dekker
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme HindIII - in situ Hi-C on cells cultured prior to 4DN SOP
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC (Tier 1)
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme DpnII - in situ Hi-C on cells cultured prior to 4DN SOP
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme Nco I - in situ H-C on cells cultured prior to DN SOP
Enzyme
NcoI
in situ Hi-C
H1-hESC (Tier 1)
Hi-C on H1 cells - protocol variations
Enzyme Dpn II - cells cultured following 4DN SOP
Enzyme
DpnII
- fin -