Properties
Dataset
Sample Tier
Sample Category
Sample
Publication
Assay Details
Status
Warnings
13 Common Properties
Project
4DN
Lab
Job Dekker, UMMS
Experiment Category
Sequencing
Experiment Type
in situ Hi-C
Organism
Human
Sample Type
stem cells
Organ/System
No value
Tissue Source
stem cell
Modifications
No value
Treatments
No value
Center
NOFIC - Dekker
Commendations
No value
Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme HindIII - in situ Hi-C on cells cultured prior to 4DN SOP
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+EGS, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC (Tier 1)
Hi-C on H1 cells - protocol variations
Formaldehyde+DSG, DpnII, H1-hESC (Tier 1)
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme DpnII - in situ Hi-C on cells cultured prior to 4DN SOP
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme Nco I - in situ H-C on cells cultured prior to DN SOP
Enzyme
NcoI
in situ Hi-C
H1-hESC (Tier 1)
Hi-C on H1 cells - protocol variations
Enzyme Dpn II - cells cultured following 4DN SOP
Enzyme
DpnII
- fin -