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Sample Category
Modifications
Treatments
16 Common Properties
 Project
4DN
 Lab
Bing Ren, UCSD
 Experiment Category
Sequencing
 Experiment Type
in situ Hi-C
 Organism
Mouse
 Sample Type
stem cells
 Sample Tier
Tier 2
 Sample
F123-CASTx129 (Tier 2)
 Tissue Source
stem cell
 Publication
Naoki Kubo et al. (2017) Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
 Assay Details
Enzyme: MboI
 Center
NOFIC - Ren
 Status
Released
 Commendations
No value
 Warnings
Biosample Metadata Incomplete
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
F123-CASTx129 (Tier 2)
Hi-C on CTCF-AID tagged F123-CASTx129
CTCF depleted by auxin treatment (0.5 mM, 96.0h)
Enzyme
MboI
in situ Hi-C
F123-CASTx129 (Tier 2)
Hi-C on CTCF-AID tagged F123-CASTx129
CTCF depleted by auxin treatment (0.5 mM, 48.0h)
Enzyme
MboI
in situ Hi-C
F123-CASTx129 (Tier 2)
Hi-C on CTCF-AID tagged F123-CASTx129
CTCF depleted by auxin treatment (0.5 mM, 24.0h)
Enzyme
MboI
in situ Hi-C
F123-CASTx129 (Tier 2)
Hi-C on CTCF-AID tagged F123-CASTx129
WT
Enzyme
MboI
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