Data Browser
Filter & browse experiments

Included Properties

Sample
Treatments
Assay Details
Set Type
Warnings
15 Common Properties
 Project
4DN
 Lab
Alistair Boettiger, STANFORD
 Experiment Category
Microscopy
 Experiment Type
FISH
 Organism
Mouse
 Sample Type
stem cells
 Sample Tier
Unclassified
 Sample Category
Mouse stem cell
 Organ/System
No value
 Tissue Source
stem cell
 Publication
Hafner A et al. (2023) PMID:37146570
 Modifications
No value
 Center
Bintu
 Status
Released
 Commendations
No value
Title
Experiment Type
1
Biosample
Dataset
2
Condition
3
Assay Details
Lab
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
150 Mb, mESC CTCF-AID + auxin
Target
150-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
150 Mb, mESC CTCF-AID untreated
Target
150-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
150 Mb, mESC RAD21-AID + auxin
Target
150-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
150 Mb, mESC RAD21-AID untreated
Target
150-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
150 Mb, mESC untreated
Target
150-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
3 Mb, mESC CTCF-AID + auxin
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
3 Mb, mESC CTCF-AID untreated
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
3 Mb, mESC RAD21-AID + auxin
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
3 Mb, mESC RAD21-AID untreated
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
3 Mb, mESC untreated
Target
3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
30 Mb, mESC CTCF-AID + auxin
Target
30-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
30 Mb, mESC CTCF-AID untreated
Target
30-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
30 Mb, mESC RAD21-AID + auxin
Target
30-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
30 Mb, mESC RAD21-AID untreated
Target
30-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a
Chromatin tracing of chr3 in mESC with CTCF and cohesin depletion
30 Mb, mESC untreated
Target
30-Mb chr3 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
150 Mb, mESC CTCF-AID + auxin
Target
150-Mb chr6 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
150 Mb, mESC CTCF-AID untreated
Target
150-Mb chr6 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
150 Mb, mESC RAD21-AID + auxin
Target
150-Mb chr6 (mouse)
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
150 Mb, mESC RAD21-AID untreated
Target
150-Mb chr6 (mouse)
multiplexed FISH
ES-E14TG2a
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
150 Mb, mESC untreated
Target
150-Mb chr6 (mouse)
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
3 Mb, mESC CTCF-AID + auxin
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with CTCF-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
3 Mb, mESC CTCF-AID untreated
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
3 Mb, mESC RAD21-AID + auxin
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a with Rad21-AID
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
3 Mb, mESC RAD21-AID untreated
Target
3-Mb chr6 (mouse); 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
multiplexed FISH
ES-E14TG2a
Chromatin tracing of chr6 in mESC with CTCF and cohesin depletion
3 Mb, mESC untreated
Target
3-Mb chr6 (mouse), Geminin (mouse), Chromosomes