Data Browser
Filter & browse experiments

Included Properties

Data Type
  • ExperimentSetReplicate11
    • Lab
  • Bing Ren, UCSD11
    • Experiment Type
  • FISH
  • multiplexed FISH11
    • Dataset
  • Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE11
    • Sample Category
    Treatments
    Set Type
  • Replicate11
    • Warnings
    14 Common Properties
     Project
    4DN
     Experiment Category
    Microscopy
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    No value
     Modifications
    Crispr
     Assay Details
    Target: 101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
     Center
    CDIMV - Ren
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESJ15KEBD
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    Knock-out of Kat6b
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESQD7KQVS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESTLJOO1C
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESE2MH977
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES2LZ7D8W
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESG53SEUU
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESX8IACI3
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESKBC3QBS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES9946GB9
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES3QUSY1F
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESI7RG1SM
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    - fin -