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Data Type
  • ExperimentSetReplicate5
    • Lab
    Experiment Category
    Experiment Type
    Dataset
    Sample
  • IMR-90 (Tier 1)5
    • Organ/System
    Publication
    Assay Details
    Center
    Set Type
  • Replicate5
    • Commendations
    Warnings
    9 Common Properties
     Project
    4DN
     Organism
    Human
     Sample Type
    primary cells
     Sample Tier
    Tier 1
     Sample Category
    IMR-90
     Tissue Source
    fibroblast of lung
     Modifications
    No value
     Treatments
    No value
     Status
    Released
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESWKPWJD5
    DNA FISH
    IMR-90 (Tier 1)
    SMSN (Barentine et al 2019 bioRxiv)
    LAD/TAD in IMR90
    Target
    GRCh38:5:116144601-116449681 region, Chromosome 22 TADs
    David Baddeley, YALE
    4DNESVDDCXBV
    DNA FISH
    IMR-90 (Tier 1)
    SMSN (Barentine et al 2019 bioRxiv)
    LAD/lamin in IMR90
    Target
    Human chr13 LAD (pool 2), LaminA/C protein
    David Baddeley, YALE
    4DNES4D5MWEZ
    sci-Hi-C
    IMR-90 (Tier 1)
    sci-Hi-C on five human cell lines - analyzed using topic modeling
    IMR-90
    Enzyme
    DpnII
    Jay Ashok Shendure, UW
    4DNES4CEYDPH
    2-stage Repli-seq
    IMR-90 (Tier 1)
    E/L repliseq on IMR-90 cells (2017-08-17)
    late
    Fraction
    late fraction of 2 fractions
    David Gilbert, SDBRI
    4DNES8128EIS
    2-stage Repli-seq
    IMR-90 (Tier 1)
    E/L repliseq on IMR-90 cells (2017-08-17)
    early
    Fraction
    early fraction of 2 fractions
    David Gilbert, SDBRI
    - fin -