28 fewer sets in 4DN-only Data.
Included Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Treatments
Assay Details
Center
Set Type
Status
Commendations
Warnings
2 Common Properties
Experiment Category
Sequencing
Modifications
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ ChIA-PET
GM12878
in situ ChIA-PET on GM12878
RNA Pol II
Target
RNA Pol II
CUT&RUN
GM12878 (Tier 1)
H3K27me3 - GM12878
Cell Signaling 9733S
Target
H3K27me3
CUT&RUN
GM12878 (Tier 1)
H2A.Z - GM12878
Active Motif 39113
Target
H2A.Z protein
CUT&RUN
GM12878 (Tier 1)
Suz12 - GM12878
ab12073
Target
SUZ12 protein
CUT&RUN
GM12878 (Tier 1)
H3K4me2 - GM12878
Upstate 07-030
Target
H3K4me2
CUT&RUN
GM12878 (Tier 1)
CTCF - GM12878
Millipore 07-729
Target
CTCF protein
CUT&RUN
GM12878 (Tier 1)
NPAT - GM12878
PA5-66839
Target
NPAT protein
CUT&RUN
GM12878 (Tier 1)
H3K27ac - GM12878
Millipore MABE647
Target
H3K27ac
CUT&RUN
GM12878 (Tier 1)
H3K4me3 - GM12878
Active Motif 39159
Target
H3K4me3
CUT&RUN
GM12878 (Tier 1)
Ring1B - GM12878
ab101273
Target
Ring2_1b protein
CUT&RUN
GM12878 (Tier 1)
IgG control - GM12878
ab46540
Target
IgG protein
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, HindIII digestion
Enzyme
HindIII
2-stage Repli-seq
GM12878 (Tier 1)
E/L repliseq on GM12878 cells (2017-08-17)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
GM12878 (Tier 1)
E/L repliseq on GM12878 cells (2017-08-17)
early
Fraction
early fraction of 2 fractions
ChIP-seq
GM12878 (Tier 1)
H3K27ac ChIP-seq
Diagenode, C15200184-50
Target
H3K27ac
ChIP-seq
GM12878 (Tier 1)
CTCF ChIP-seq
Santa Cruz, sc-271514
Target
CTCF protein
ChIP-seq
GM12878 (Tier 1)
CTCF ChIP-seq
Santa Cruz, sc-271474
Target
CTCF protein
ChIP-seq
GM12878 (Tier 1)
CTCF ChIP-seq
Cell Signaling, 3418T
Target
CTCF protein