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22 fewer sets in 4DN-only Data.

Included Properties

Sample
Organ/System
Set Type
Warnings
16 Common Properties
 Project
External
 Lab
Job Dekker, UMMS
 Experiment Category
Sequencing
 Experiment Type
Hi-C
 Organism
Chicken
 Sample Type
immortalized cells
 Sample Tier
Unclassified
 Sample Category
Other
 Tissue Source
bursa of Fabricius
 Publication
Gibcus JH et al. (2018) PMID:29348367
 Modifications
No value
 Treatments
Chemical
 Assay Details
Enzyme: HindIII
 Center
External
 Status
Released
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
prometaphase block (60m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
prometaphase (30m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
prometaphase (15m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
prophase (10m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
prophase (8m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
G2 block (0m), CAPH2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
HiC on sync. CAPH2-AID chicken cells
G2 block (0m), CAPH2+
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase block (60m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase (30m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase (15m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prophase (10m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prophase (8m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
G2 block (0m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
G2 block (0m), CAPH+
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on unsorted sync. SMC2-AID chicken cells
prometaphase block (75m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on unsorted sync. SMC2-AID chicken cells
prometaphase (45m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on unsorted sync. SMC2-AID chicken cells
prophase (10m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on unsorted sync. SMC2-AID chicken cells
G2 block (0m), SMC2+
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on sorted sync. SMC2-AID chicken cells
prometaphase block (75m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on sorted sync. SMC2-AID chicken cells
prometaphase (45m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on sorted sync. SMC2-AID chicken cells
prophase (10m), SMC2-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
HiC on sorted sync. SMC2-AID chicken cells
G2 block (0m), SMC2-
Enzyme
HindIII
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