Included Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Assay Details
Center
Set Type
Tags
Status
Commendations
Warnings
3 Common Properties
Experiment Category
Sequencing
Modifications
No value
Treatments
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
2-stage Repli-seq
HFFc6 (Tier 1)
E/L repliseq on HFFc6 cells - Gold Standard (2018-02-06)
late
Fraction
late fraction of 2 fractions
2-stage Repli-seq
HFFc6 (Tier 1)
E/L repliseq on HFFc6 cells - Gold Standard (2018-02-06)
early
Fraction
early fraction of 2 fractions
DamID-seq
HFFc6 (Tier 1)
DamID-seq on HFFc6 cells (2017-12-14)
Dam-only Control
Target
None (Control)
DamID-seq
HFFc6 (Tier 1)
DamID-seq on HFFc6 cells (2017-12-14)
LaminB1-Dam
Target
LMNB1 protein
DamID-seq
H1-hESC (Tier 1)
DamID-seq on H1-hESC cells (2017-12-14)
Dam-only Control
Target
None (Control)
DamID-seq
H1-hESC (Tier 1)
DamID-seq on H1-hESC cells (2017-12-14)
LaminB1-Dam
Target
LMNB1 protein
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFFc6 (4DN Tier1 clone) with 4DN cell culture SOP.
Enzyme
DpnII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme DpnII - in situ Hi-C on cells cultured prior to 4DN SOP
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme NcoI - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
NcoI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
HindIII
in situ Hi-C
H1-hESC
Hi-C on H1 cells - protocol variations
Enzyme Nco I - in situ H-C on cells cultured prior to DN SOP
Enzyme
NcoI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF cells grown on plate
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme MboI - in situ Hi-C on HFF cells grown on beads
Enzyme
MboI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFF cells grown on beads
Enzyme
DpnII
in situ Hi-C
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Hi-C on ES-E14 +/- Mll3-Mll4
Mll3-Mll4 DKO, Neural progenitor differentiation (60h)
Enzyme
MboI
in situ Hi-C
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Hi-C on ES-E14 +/- Mll3-Mll4
Mll3-Mll4 DKO, Neural progenitor differentiation (36h)
Enzyme
MboI
in situ Hi-C
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Hi-C on ES-E14 +/- Mll3-Mll4
Mll3-Mll4 DKO
Enzyme
MboI
in situ Hi-C
ES-E14
Hi-C on ES-E14 +/- Mll3-Mll4
WT, Neural progenitor differentiation (60h)
Enzyme
MboI
in situ Hi-C
ES-E14
Hi-C on ES-E14 +/- Mll3-Mll4
WT, Neural progenitor differentiation (36h)
Enzyme
MboI
Dilution Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - Dilution Hi-C on cells cultured prior to 4DN SOP
Enzyme
HindIII