Included Properties
Data Type
Sample Type
Sample Category
Sample
Organ/System
Tissue Source
Treatments
Set Type
UUID
Warnings
13 Common Properties
Project
4DN
Lab
Alistair Boettiger, STANFORD
Experiment Category
Microscopy
Experiment Type
FISH
Dataset
Chromatin tracing of mouse HoxA locus
Organism
Mouse
Sample Tier
Unclassified
Publication
Murphy SE and Boettiger AN (2024) PMID:38361032
Modifications
No value
Assay Details
Target: 52 consecutive 5-kb regions at HoxA locus (mouse)
Center
Bintu
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
TC1 differentiated to neural progenitor cell
Chromatin tracing of mouse HoxA locus
mESC differentiated to cervical neural progenitor cells
Target
52 consecutive 5-kb regions at HoxA locus (mouse)
multiplexed FISH
TC1 with EED-dTAG, dTAG-Ring1b
Chromatin tracing of mouse HoxA locus
mESC with degraded EED and RING1B via dTAG treatment
Target
52 consecutive 5-kb regions at HoxA locus (mouse)
multiplexed FISH
TC1 with EED-dTAG, dTAG-Ring1b
Chromatin tracing of mouse HoxA locus
mESC with tagged EED and RING1B, untreated control
Target
52 consecutive 5-kb regions at HoxA locus (mouse)
multiplexed FISH
TC1 with EED-dTAG, dTAG-Ring1b
Chromatin tracing of mouse HoxA locus
mESC with tagged EED and RING1B, untreated control in 2i media
Target
52 consecutive 5-kb regions at HoxA locus (mouse)
multiplexed FISH
brain
Chromatin tracing of mouse HoxA locus
Mouse brain at E10.5
Target
52 consecutive 5-kb regions at HoxA locus (mouse)
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